Wall clock time and date at job start Tue Mar 31 2020 18:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 H 1.08996 * 109.47081 * 304.96306 * 3 2 1 5 5 C 1.50704 * 109.46958 * 184.96396 * 3 2 1 6 6 H 1.07991 * 120.00099 * 245.53237 * 5 3 2 7 7 C 1.37883 * 119.99661 * 65.53536 * 5 3 2 8 8 N 1.31514 * 119.99727 * 198.62000 * 7 5 3 9 9 Si 1.86795 * 120.00216 * 18.61855 * 7 5 3 10 10 H 1.48502 * 109.47000 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47025 * 299.99866 * 9 7 5 12 12 H 1.48493 * 109.47168 * 60.00231 * 9 7 5 13 13 N 1.46499 * 109.47020 * 64.96911 * 3 2 1 14 14 C 1.34775 * 119.99540 * 274.99351 * 13 3 2 15 15 O 1.21361 * 120.00226 * 0.02562 * 14 13 3 16 16 C 1.49351 * 119.99964 * 179.97438 * 14 13 3 17 17 O 1.21370 * 120.00106 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00012 * 180.02562 * 16 14 13 19 19 C 1.39732 * 119.99952 * 184.45687 * 18 16 14 20 20 C 1.38948 * 120.07633 * 330.52684 * 19 18 16 21 21 C 1.38075 * 119.92398 * 180.02562 * 20 19 18 22 22 C 1.38312 * 120.07622 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.15274 * 359.97438 * 22 21 20 24 24 C 1.38120 * 120.07584 * 359.68541 * 23 22 21 25 25 C 1.50703 * 120.04120 * 180.31995 * 24 23 22 26 26 C 1.52994 * 109.47158 * 265.29620 * 25 24 23 27 27 O 1.42903 * 109.47320 * 179.97438 * 26 25 24 28 28 C 1.42899 * 113.99804 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.47257 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47048 * 299.99649 * 1 2 3 31 31 H 1.08993 * 109.47435 * 60.00019 * 1 2 3 32 32 H 1.09000 * 109.46899 * 239.99817 * 2 1 3 33 33 H 1.09000 * 109.47154 * 120.00273 * 2 1 3 34 34 H 0.97008 * 119.99845 * 354.95096 * 8 7 5 35 35 H 0.96994 * 120.00071 * 94.99788 * 13 3 2 36 36 H 0.96999 * 120.00856 * 4.45085 * 18 16 14 37 37 H 1.08003 * 120.03710 * 359.97253 * 20 19 18 38 38 H 1.08004 * 119.96135 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.92254 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.96453 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46711 * 25.29223 * 25 24 23 42 42 H 1.08998 * 109.47507 * 145.29387 * 25 24 23 43 43 H 1.09004 * 109.47013 * 300.00201 * 26 25 24 44 44 H 1.09004 * 109.47315 * 59.99874 * 26 25 24 45 45 H 1.08998 * 109.46856 * 179.97438 * 28 27 26 46 46 H 1.08998 * 109.47290 * 299.99588 * 28 27 26 47 47 H 1.09006 * 109.47346 * 60.00275 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9813 -0.8422 5 6 3.5420 1.4442 -0.1229 6 1 4.1501 1.8074 0.6922 7 6 4.1398 0.9820 -1.2763 8 7 5.4087 0.6367 -1.2663 9 14 3.1473 0.8463 -2.8530 10 1 4.0149 0.3277 -3.9409 11 1 2.0081 -0.0826 -2.6423 12 1 2.6302 2.1865 -3.2292 13 7 1.6518 2.0976 1.2515 14 6 0.4345 2.6647 1.3658 15 8 -0.3402 2.6321 0.4321 16 6 0.0384 3.3321 2.6418 17 8 0.8129 3.3643 3.5757 18 7 -1.1791 3.8987 2.7562 19 6 -1.5156 4.6035 3.9149 20 6 -0.9457 4.2537 5.1329 21 6 -1.2808 4.9520 6.2760 22 6 -2.1831 5.9982 6.2096 23 6 -2.7521 6.3490 4.9992 24 6 -2.4160 5.6593 3.8507 25 6 -3.0312 6.0469 2.5307 26 6 -4.2597 5.1746 2.2648 27 8 -4.8434 5.5425 1.0134 28 6 -6.0038 4.7835 0.6678 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.9429 0.7755 -0.4685 35 1 2.2708 2.1234 1.9977 36 1 -1.8219 3.8173 2.0343 37 1 -0.2421 3.4361 5.1856 38 1 -0.8386 4.6804 7.2231 39 1 -2.4438 6.5425 7.1054 40 1 -3.4566 7.1662 4.9510 41 1 -3.3297 7.0947 2.5627 42 1 -2.3025 5.9009 1.7333 43 1 -3.9612 4.1267 2.2329 44 1 -4.9885 5.3207 3.0622 45 1 -6.3870 5.1235 -0.2943 46 1 -5.7410 3.7277 0.6021 47 1 -6.7687 4.9207 1.4322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190979180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:56 Heat of formation + Delta-G solvation = -93.230350 kcal Electronic energy + Delta-G solvation = -29003.917462 eV Core-core repulsion = 24958.846868 eV Total energy + Delta-G solvation = -4045.070594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.12710 -39.56716 -38.31649 -37.92964 -35.73688 -34.93747 -33.53457 -32.49971 -31.52927 -30.17176 -29.13898 -27.54914 -26.55409 -24.98166 -23.71796 -22.81035 -22.27751 -21.18257 -20.43546 -19.71354 -18.81741 -17.70383 -17.18096 -16.91282 -16.42914 -16.23147 -15.92527 -15.65045 -15.39329 -15.25069 -14.70370 -14.44610 -14.06768 -13.77046 -13.50555 -13.41348 -13.30493 -13.10741 -12.75230 -12.55231 -12.37638 -12.18574 -12.07843 -11.82595 -11.61525 -11.56003 -11.35060 -11.13741 -10.98113 -10.79905 -10.57730 -10.50841 -9.97029 -9.96466 -9.71669 -9.28295 -9.16326 -8.96754 -8.38642 -8.35943 -8.28737 -6.65877 -4.29136 0.92322 1.17369 1.76196 2.51636 3.32962 3.34613 3.39995 3.47051 3.54464 3.69226 3.92159 4.35882 4.53353 4.61131 4.78453 4.82235 4.85137 4.94324 5.06321 5.08523 5.10238 5.11512 5.17024 5.25688 5.35679 5.41444 5.59514 5.70756 5.86473 5.94674 5.98197 6.05580 6.13378 6.18564 6.27984 6.36285 6.52899 6.66120 6.76107 6.81846 6.83909 6.87486 6.96047 7.15850 7.24190 7.47474 7.71657 8.14730 8.22752 8.45070 8.73804 9.39861 10.75416 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.003121 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.933026 B = 8968.678380 C =10457.243056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.246 3.754 4 H 0.046 0.954 5 C -0.623 4.623 6 H 0.065 0.935 7 C 0.042 3.958 8 N -0.892 5.892 9 Si 1.039 2.961 10 H -0.282 1.282 11 H -0.269 1.269 12 H -0.279 1.279 13 N -0.660 5.660 14 C 0.494 3.506 15 O -0.529 6.529 16 C 0.507 3.493 17 O -0.501 6.501 18 N -0.649 5.649 19 C 0.153 3.847 20 C -0.126 4.126 21 C -0.101 4.101 22 C -0.137 4.137 23 C -0.095 4.095 24 C -0.111 4.111 25 C -0.082 4.082 26 C 0.065 3.935 27 O -0.390 6.390 28 C 0.031 3.969 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.271 0.729 35 H 0.406 0.594 36 H 0.422 0.578 37 H 0.149 0.851 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.650 8.688 11.563 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C 0.144 3.856 4 H 0.064 0.936 5 C -0.661 4.661 6 H 0.083 0.917 7 C -0.166 4.166 8 N -0.524 5.524 9 Si 0.866 3.134 10 H -0.207 1.207 11 H -0.195 1.195 12 H -0.205 1.205 13 N -0.308 5.308 14 C 0.273 3.727 15 O -0.408 6.408 16 C 0.290 3.710 17 O -0.374 6.374 18 N -0.295 5.295 19 C 0.058 3.942 20 C -0.146 4.146 21 C -0.120 4.120 22 C -0.155 4.155 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.012 4.012 27 O -0.309 6.309 28 C -0.065 4.065 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.241 0.759 36 H 0.260 0.740 37 H 0.167 0.833 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -20.368 8.258 9.773 24.053 hybrid contribution -0.160 0.317 1.901 1.934 sum -20.528 8.575 11.674 25.124 Atomic orbital electron populations 1.21903 0.97389 0.99249 1.01714 1.22351 0.93756 0.99350 1.02285 1.19266 0.96253 0.88691 0.81435 0.93586 1.22051 0.89233 1.50054 1.04755 0.91728 1.25686 0.97401 0.92016 1.01455 1.70875 1.08480 1.39497 1.33587 0.84115 0.75637 0.77728 0.75894 1.20739 1.19548 1.20516 1.46206 1.13470 1.52326 1.18830 1.19645 0.84454 0.81391 0.87202 1.90745 1.51266 1.59402 1.39394 1.20924 0.81483 0.79060 0.89496 1.90697 1.51039 1.56062 1.39614 1.43284 1.15923 1.51573 1.18715 1.17694 0.97650 0.92704 0.86165 1.21548 1.01055 1.01678 0.90361 1.21104 0.97165 0.95554 0.98144 1.21130 0.98237 0.98412 0.97752 1.20839 0.99647 0.99390 0.91511 1.19452 1.00527 0.95740 0.95668 1.20429 0.96274 1.00900 0.94337 1.22525 0.94774 0.97920 0.85944 1.87879 1.43892 1.60921 1.38182 1.22760 0.87218 0.95741 1.00804 0.94686 0.93749 0.92739 0.90918 0.92708 0.91902 0.75868 0.73968 0.83320 0.85611 0.85918 0.85578 0.89472 0.89880 0.93379 0.92857 0.89464 0.93777 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.51 37.16 0.32 -2.45 16 2 C -0.14 -2.98 5.30 -26.73 -0.14 -3.12 16 3 C 0.25 5.71 1.83 -69.08 -0.13 5.58 16 4 H 0.05 1.14 6.22 -51.93 -0.32 0.81 16 5 C -0.62 -16.57 8.99 -34.44 -0.31 -16.88 16 6 H 0.06 1.82 7.96 -52.49 -0.42 1.40 16 7 C 0.04 1.15 5.29 -17.82 -0.09 1.06 16 8 N -0.89 -26.15 13.70 55.43 0.76 -25.39 16 9 Si 1.04 24.33 26.33 -169.99 -4.48 19.85 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -5.83 5.79 56.52 0.33 -5.51 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.66 -13.43 5.01 -55.40 -0.28 -13.70 16 14 C 0.49 9.25 6.45 -11.63 -0.08 9.17 16 15 O -0.53 -10.51 13.62 5.49 0.07 -10.44 16 16 C 0.51 8.29 7.76 -11.63 -0.09 8.20 16 17 O -0.50 -8.75 13.58 5.48 0.07 -8.67 16 18 N -0.65 -8.82 4.88 -10.30 -0.05 -8.87 16 19 C 0.15 1.92 6.37 -83.74 -0.53 1.39 16 20 C -0.13 -1.60 8.75 -39.38 -0.34 -1.94 16 21 C -0.10 -1.03 10.04 -39.61 -0.40 -1.43 16 22 C -0.14 -1.21 10.04 -39.54 -0.40 -1.60 16 23 C -0.10 -0.86 9.68 -39.61 -0.38 -1.24 16 24 C -0.11 -1.17 5.15 -104.41 -0.54 -1.71 16 25 C -0.08 -0.80 5.10 -27.88 -0.14 -0.94 16 26 C 0.07 0.61 5.84 37.15 0.22 0.82 16 27 O -0.39 -4.16 10.70 -35.23 -0.38 -4.54 16 28 C 0.03 0.24 11.01 101.05 1.11 1.36 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.83 5.65 -51.93 -0.29 0.53 16 31 H 0.05 1.06 7.84 -51.93 -0.41 0.65 16 32 H 0.07 1.63 4.96 -51.93 -0.26 1.37 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.27 7.88 8.73 -40.82 -0.36 7.52 16 35 H 0.41 7.96 7.99 -40.82 -0.33 7.64 16 36 H 0.42 5.31 6.35 -40.82 -0.26 5.05 16 37 H 0.15 2.09 5.80 -52.48 -0.30 1.78 16 38 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 42 H 0.08 0.91 7.35 -51.93 -0.38 0.53 16 43 H 0.05 0.45 7.35 -51.93 -0.38 0.07 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -30.31 381.19 -7.26 -37.57 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -6.80 Total: 12.18 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.93 Total: -3.74 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.43 Total: -47.96 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.23 Total: -23.65 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -4.48 Total: 19.85 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.31 -7.26 -37.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190979180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.664 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds