Wall clock time and date at job start Tue Mar 31 2020 18:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 H 1.08996 * 109.47081 * 304.96306 * 3 2 1 5 5 C 1.50704 * 109.46958 * 184.96396 * 3 2 1 6 6 H 1.07991 * 120.00099 * 245.53237 * 5 3 2 7 7 C 1.37883 * 119.99661 * 65.53536 * 5 3 2 8 8 N 1.31514 * 119.99727 * 198.62000 * 7 5 3 9 9 Si 1.86795 * 120.00216 * 18.61855 * 7 5 3 10 10 H 1.48502 * 109.47000 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47025 * 299.99866 * 9 7 5 12 12 H 1.48493 * 109.47168 * 60.00231 * 9 7 5 13 13 N 1.46499 * 109.47020 * 64.96911 * 3 2 1 14 14 C 1.34775 * 119.99540 * 274.99351 * 13 3 2 15 15 O 1.21361 * 120.00226 * 0.02562 * 14 13 3 16 16 C 1.49351 * 119.99964 * 179.97438 * 14 13 3 17 17 O 1.21370 * 120.00106 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00012 * 180.02562 * 16 14 13 19 19 C 1.39732 * 119.99952 * 184.45687 * 18 16 14 20 20 C 1.38948 * 120.07633 * 330.52684 * 19 18 16 21 21 C 1.38075 * 119.92398 * 180.02562 * 20 19 18 22 22 C 1.38312 * 120.07622 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.15274 * 359.97438 * 22 21 20 24 24 C 1.38120 * 120.07584 * 359.68541 * 23 22 21 25 25 C 1.50703 * 120.04120 * 180.31995 * 24 23 22 26 26 C 1.52994 * 109.47158 * 265.29620 * 25 24 23 27 27 O 1.42903 * 109.47320 * 179.97438 * 26 25 24 28 28 C 1.42899 * 113.99804 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.47257 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47048 * 299.99649 * 1 2 3 31 31 H 1.08993 * 109.47435 * 60.00019 * 1 2 3 32 32 H 1.09000 * 109.46899 * 239.99817 * 2 1 3 33 33 H 1.09000 * 109.47154 * 120.00273 * 2 1 3 34 34 H 0.97008 * 119.99845 * 354.95096 * 8 7 5 35 35 H 0.96994 * 120.00071 * 94.99788 * 13 3 2 36 36 H 0.96999 * 120.00856 * 4.45085 * 18 16 14 37 37 H 1.08003 * 120.03710 * 359.97253 * 20 19 18 38 38 H 1.08004 * 119.96135 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.92254 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.96453 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46711 * 25.29223 * 25 24 23 42 42 H 1.08998 * 109.47507 * 145.29387 * 25 24 23 43 43 H 1.09004 * 109.47013 * 300.00201 * 26 25 24 44 44 H 1.09004 * 109.47315 * 59.99874 * 26 25 24 45 45 H 1.08998 * 109.46856 * 179.97438 * 28 27 26 46 46 H 1.08998 * 109.47290 * 299.99588 * 28 27 26 47 47 H 1.09006 * 109.47346 * 60.00275 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9813 -0.8422 5 6 3.5420 1.4442 -0.1229 6 1 4.1501 1.8074 0.6922 7 6 4.1398 0.9820 -1.2763 8 7 5.4087 0.6367 -1.2663 9 14 3.1473 0.8463 -2.8530 10 1 4.0149 0.3277 -3.9409 11 1 2.0081 -0.0826 -2.6423 12 1 2.6302 2.1865 -3.2292 13 7 1.6518 2.0976 1.2515 14 6 0.4345 2.6647 1.3658 15 8 -0.3402 2.6321 0.4321 16 6 0.0384 3.3321 2.6418 17 8 0.8129 3.3643 3.5757 18 7 -1.1791 3.8987 2.7562 19 6 -1.5156 4.6035 3.9149 20 6 -0.9457 4.2537 5.1329 21 6 -1.2808 4.9520 6.2760 22 6 -2.1831 5.9982 6.2096 23 6 -2.7521 6.3490 4.9992 24 6 -2.4160 5.6593 3.8507 25 6 -3.0312 6.0469 2.5307 26 6 -4.2597 5.1746 2.2648 27 8 -4.8434 5.5425 1.0134 28 6 -6.0038 4.7835 0.6678 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.9429 0.7755 -0.4685 35 1 2.2708 2.1234 1.9977 36 1 -1.8219 3.8173 2.0343 37 1 -0.2421 3.4361 5.1856 38 1 -0.8386 4.6804 7.2231 39 1 -2.4438 6.5425 7.1054 40 1 -3.4566 7.1662 4.9510 41 1 -3.3297 7.0947 2.5627 42 1 -2.3025 5.9009 1.7333 43 1 -3.9612 4.1267 2.2329 44 1 -4.9885 5.3207 3.0622 45 1 -6.3870 5.1235 -0.2943 46 1 -5.7410 3.7277 0.6021 47 1 -6.7687 4.9207 1.4322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190979180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:56 Heat of formation + Delta-G solvation = -113.829315 kcal Electronic energy + Delta-G solvation = -29004.810700 eV Core-core repulsion = 24958.846868 eV Total energy + Delta-G solvation = -4045.963833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.32389 -40.79432 -39.50815 -38.72260 -37.37488 -36.11112 -34.55655 -34.29619 -33.20232 -31.05678 -29.93233 -29.35145 -27.21827 -26.32126 -24.46783 -24.37177 -23.60939 -22.09346 -21.83918 -21.33976 -20.31529 -19.25792 -18.48816 -17.81701 -17.54062 -17.32454 -17.13484 -16.83686 -16.39796 -16.02123 -15.89659 -15.81867 -15.28556 -15.08408 -14.90609 -14.56371 -14.50531 -14.24915 -14.13320 -14.01322 -13.88696 -13.60803 -13.09486 -12.80639 -12.70829 -12.59892 -12.47004 -12.33155 -12.30463 -12.09305 -12.07050 -11.80264 -11.57183 -11.46337 -11.17912 -10.67316 -10.63794 -10.48356 -10.06775 -9.78274 -9.21680 -8.85186 -6.48971 -0.11801 0.36313 0.58991 1.22809 1.45786 1.51663 1.70468 2.04372 2.40987 2.58391 2.65873 2.90922 2.97228 3.34314 3.78382 3.85420 4.06809 4.15001 4.23478 4.26646 4.35045 4.35523 4.41802 4.44948 4.45784 4.49315 4.52972 4.55418 4.75735 4.83849 4.86357 4.94185 5.05644 5.10355 5.10751 5.18459 5.21391 5.30047 5.37710 5.48197 5.49395 5.57365 5.58689 5.89904 5.96376 6.00606 6.18293 6.38290 6.46029 6.63315 6.93151 7.27785 8.54964 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.003121 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.933026 B = 8968.678380 C =10457.243056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.136 4.136 3 C 0.251 3.749 4 H 0.037 0.963 5 C -0.623 4.623 6 H 0.036 0.964 7 C -0.002 4.002 8 N -0.923 5.923 9 Si 1.072 2.928 10 H -0.282 1.282 11 H -0.239 1.239 12 H -0.270 1.270 13 N -0.668 5.668 14 C 0.498 3.502 15 O -0.538 6.538 16 C 0.512 3.488 17 O -0.517 6.517 18 N -0.633 5.633 19 C 0.123 3.877 20 C -0.147 4.147 21 C -0.106 4.106 22 C -0.126 4.126 23 C -0.092 4.092 24 C -0.108 4.108 25 C -0.079 4.079 26 C 0.066 3.934 27 O -0.413 6.413 28 C 0.025 3.975 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.258 0.742 35 H 0.408 0.592 36 H 0.425 0.575 37 H 0.127 0.873 38 H 0.143 0.857 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.043 0.957 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.983 9.861 12.477 28.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C 0.147 3.853 4 H 0.055 0.945 5 C -0.661 4.661 6 H 0.054 0.946 7 C -0.204 4.204 8 N -0.557 5.557 9 Si 0.893 3.107 10 H -0.208 1.208 11 H -0.164 1.164 12 H -0.196 1.196 13 N -0.317 5.317 14 C 0.278 3.722 15 O -0.417 6.417 16 C 0.295 3.705 17 O -0.392 6.392 18 N -0.279 5.279 19 C 0.030 3.970 20 C -0.167 4.167 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.110 4.110 24 C -0.110 4.110 25 C -0.116 4.116 26 C -0.010 4.010 27 O -0.333 6.333 28 C -0.071 4.071 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.243 0.757 36 H 0.265 0.735 37 H 0.145 0.855 38 H 0.161 0.839 39 H 0.173 0.827 40 H 0.175 0.825 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.062 0.938 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.752 9.450 10.723 27.721 hybrid contribution 0.814 0.069 1.765 1.945 sum -22.939 9.520 12.487 27.798 Atomic orbital electron populations 1.21802 0.95121 1.00935 1.01496 1.22245 0.95708 0.97647 1.01891 1.19007 0.93807 0.90066 0.82380 0.94540 1.22228 0.91255 1.48865 1.03718 0.94589 1.26930 0.97506 0.91476 1.04453 1.70987 1.09574 1.42017 1.33115 0.83724 0.75515 0.78896 0.72605 1.20797 1.16353 1.19553 1.46038 1.14470 1.53141 1.18056 1.19956 0.83572 0.80655 0.88036 1.90728 1.51372 1.59520 1.40106 1.20345 0.82399 0.79567 0.88231 1.90705 1.51786 1.57090 1.39643 1.43118 1.14716 1.50736 1.19336 1.17903 0.99471 0.94101 0.85541 1.21512 1.01538 1.02065 0.91565 1.21365 0.97470 0.95666 0.97982 1.21536 0.96567 0.97326 0.98971 1.21240 0.99533 0.99484 0.90772 1.19590 0.99721 0.95015 0.96720 1.20409 0.96010 1.01878 0.93339 1.22537 0.94936 0.97416 0.86139 1.87840 1.44958 1.61673 1.38804 1.22930 0.86804 0.95519 1.01873 0.92056 0.93784 0.93103 0.91615 0.92836 0.93297 0.75704 0.73507 0.85495 0.83872 0.82658 0.82507 0.88008 0.91695 0.93953 0.91139 0.88583 0.93795 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 8.51 71.98 0.61 -4.31 16 2 C -0.14 -5.74 5.30 30.59 0.16 -5.58 16 3 C 0.25 11.69 1.83 44.25 0.08 11.77 16 4 H 0.04 1.79 6.22 -2.39 -0.01 1.78 16 5 C -0.62 -34.02 8.99 25.60 0.23 -33.79 16 6 H 0.04 2.12 7.96 -2.92 -0.02 2.10 16 7 C 0.00 -0.14 5.29 84.66 0.45 0.31 16 8 N -0.92 -55.65 13.70 21.45 0.29 -55.36 16 9 Si 1.07 48.73 26.33 68.60 1.81 50.53 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.24 -9.68 5.79 99.48 0.58 -9.11 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 13 N -0.67 -27.64 5.01 -447.54 -2.24 -29.88 16 14 C 0.50 18.70 6.45 87.24 0.56 19.26 16 15 O -0.54 -21.13 13.62 -3.28 -0.04 -21.17 16 16 C 0.51 16.94 7.76 87.24 0.68 17.61 16 17 O -0.52 -18.53 13.58 -3.31 -0.04 -18.58 16 18 N -0.63 -17.14 4.88 -304.84 -1.49 -18.63 16 19 C 0.12 3.02 6.37 38.21 0.24 3.27 16 20 C -0.15 -3.65 8.75 22.40 0.20 -3.45 16 21 C -0.11 -1.95 10.04 22.25 0.22 -1.73 16 22 C -0.13 -1.75 10.04 22.29 0.22 -1.53 16 23 C -0.09 -1.32 9.68 22.25 0.22 -1.10 16 24 C -0.11 -2.05 5.15 -19.73 -0.10 -2.15 16 25 C -0.08 -1.39 5.10 29.85 0.15 -1.24 16 26 C 0.07 1.11 5.84 71.98 0.42 1.53 16 27 O -0.41 -8.16 10.70 -148.98 -1.59 -9.75 16 28 C 0.02 0.34 11.01 113.37 1.25 1.59 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.58 5.65 -2.39 -0.01 1.56 16 31 H 0.05 1.87 7.84 -2.39 -0.02 1.85 16 32 H 0.07 2.85 4.96 -2.39 -0.01 2.84 16 33 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.26 15.69 8.73 -92.70 -0.81 14.88 16 35 H 0.41 16.57 7.99 -92.71 -0.74 15.83 16 36 H 0.43 10.62 6.35 -92.71 -0.59 10.04 16 37 H 0.13 3.68 5.80 -2.91 -0.02 3.66 16 38 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 39 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.10 1.48 8.05 -2.39 -0.02 1.46 16 42 H 0.06 1.38 7.35 -2.39 -0.02 1.36 16 43 H 0.04 0.74 7.35 -2.38 -0.02 0.73 16 44 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.04 0.59 8.14 -2.39 -0.02 0.58 16 47 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -66.76 381.19 1.79 -64.97 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.49 Total: 37.41 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 5.59 Total: 0.45 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -3.44 Total: -103.87 kcal Atomic # 8 Polarization: -47.82 SS G_CDS: -1.68 Total: -49.50 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.81 Total: 50.53 kcal Total: -66.76 1.79 -64.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190979180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.855 kcal (2) G-P(sol) polarization free energy of solvation -66.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds