Wall clock time and date at job start Tue Mar 31 2020 18:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50697 * 109.47256 * 174.35001 * 3 2 1 6 6 H 1.08002 * 119.99408 * 87.46315 * 5 3 2 7 7 C 1.37874 * 120.00506 * 267.46474 * 5 3 2 8 8 N 1.31513 * 120.00322 * 176.06898 * 7 5 3 9 9 Si 1.86801 * 119.99737 * 356.07254 * 7 5 3 10 10 H 1.48507 * 109.47191 * 275.08923 * 9 7 5 11 11 H 1.48500 * 109.47138 * 35.08466 * 9 7 5 12 12 H 1.48498 * 109.47268 * 155.09112 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34776 * 119.99949 * 84.99728 * 13 3 2 15 15 O 1.21276 * 120.00026 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99927 * 179.97438 * 14 13 3 17 17 N 1.46500 * 109.47168 * 180.02562 * 16 14 13 18 18 C 1.46502 * 119.99885 * 90.00003 * 17 16 14 19 19 C 1.34776 * 119.99784 * 270.00100 * 17 16 14 20 20 O 1.21516 * 120.00373 * 359.97438 * 19 17 16 21 21 O 1.34637 * 120.00109 * 179.97438 * 19 17 16 22 22 C 1.45198 * 117.00502 * 179.97438 * 21 19 17 23 23 C 1.50694 * 109.47201 * 180.02562 * 22 21 19 24 24 C 1.38236 * 119.99845 * 269.72605 * 23 22 21 25 25 C 1.38239 * 119.99535 * 179.76737 * 24 23 22 26 26 C 1.38230 * 120.00280 * 0.51195 * 25 24 23 27 27 C 1.38236 * 119.99796 * 359.74280 * 26 25 24 28 28 C 1.38230 * 120.00110 * 90.00537 * 23 22 21 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 31 31 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 32 32 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 33 33 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 34 34 H 0.96998 * 119.99645 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99925 * 264.99957 * 13 3 2 36 36 H 1.08995 * 109.47086 * 300.00436 * 16 14 13 37 37 H 1.08995 * 109.46903 * 60.00037 * 16 14 13 38 38 H 1.09000 * 109.46885 * 90.00137 * 18 17 16 39 39 H 1.09003 * 109.46670 * 209.99744 * 18 17 16 40 40 H 1.08995 * 109.47118 * 329.99625 * 18 17 16 41 41 H 1.09005 * 109.47021 * 300.00550 * 22 21 19 42 42 H 1.08996 * 109.46642 * 60.00298 * 22 21 19 43 43 H 1.07997 * 120.00155 * 0.02562 * 24 23 22 44 44 H 1.07998 * 119.99964 * 180.23193 * 25 24 23 45 45 H 1.07999 * 120.00417 * 179.72320 * 26 25 24 46 46 H 1.08007 * 119.99920 * 179.97438 * 27 26 25 47 47 H 1.08006 * 120.00074 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4449 0.1399 6 1 4.1647 1.3736 -0.7386 7 6 4.1163 1.5379 1.3891 8 7 5.4229 1.4622 1.5183 9 14 3.0406 1.7713 2.8984 10 1 2.7489 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2554 4.0966 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6591 -1.3886 15 8 -0.3345 2.6309 -0.4639 16 6 0.0650 3.3285 -2.6828 17 7 -1.2949 3.8620 -2.5713 18 6 -1.5084 5.2276 -2.0858 19 6 -2.3494 3.0964 -2.9153 20 8 -2.1722 1.9638 -3.3185 21 8 -3.5992 3.5864 -2.8124 22 6 -4.6865 2.7061 -3.2009 23 6 -6.0007 3.4211 -3.0203 24 6 -6.6751 3.3341 -1.8167 25 6 -7.8783 3.9940 -1.6495 26 6 -8.4122 4.7322 -2.6891 27 6 -7.7403 4.8148 -3.8943 28 6 -6.5346 4.1593 -4.0599 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8279 1.5280 2.3972 35 1 2.2932 2.1156 -1.9977 36 1 0.7586 4.1432 -2.8907 37 1 0.1051 2.6014 -3.4938 38 1 -1.5024 5.9181 -2.9292 39 1 -2.4700 5.2855 -1.5756 40 1 -0.7120 5.4951 -1.3915 41 1 -4.5684 2.4225 -4.2468 42 1 -4.6704 1.8120 -2.5779 43 1 -6.2601 2.7540 -1.0058 44 1 -8.4034 3.9291 -0.7080 45 1 -9.3543 5.2440 -2.5599 46 1 -8.1576 5.3913 -4.7068 47 1 -6.0096 4.2240 -5.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191310233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:33 Heat of formation + Delta-G solvation = -87.140248 kcal Electronic energy + Delta-G solvation = -28711.260016 eV Core-core repulsion = 24666.453508 eV Total energy + Delta-G solvation = -4044.806508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66480 -39.57198 -38.99264 -36.78911 -35.59335 -34.87457 -32.45644 -32.35278 -31.54420 -31.25707 -28.88231 -27.28076 -27.14614 -25.75074 -22.93769 -22.81257 -21.84668 -21.26838 -20.10691 -19.53689 -18.12720 -17.60072 -17.44663 -16.77817 -16.64622 -15.96564 -15.72561 -15.49177 -15.18379 -14.74741 -14.57708 -14.16808 -13.80596 -13.79198 -13.66631 -13.21317 -13.00208 -12.79747 -12.75496 -12.71874 -12.50767 -12.30247 -11.88538 -11.85094 -11.53556 -11.44243 -11.42927 -10.94771 -10.71975 -10.66774 -10.65196 -10.50812 -9.93900 -9.85543 -9.55351 -9.26769 -9.23052 -9.18828 -8.73759 -8.56774 -7.99845 -6.23765 -4.26990 0.80630 1.05724 2.13318 2.85486 3.23735 3.27576 3.33599 3.39522 3.41867 3.86329 4.10430 4.32338 4.44784 4.47594 4.65986 4.77639 4.93349 5.05293 5.10481 5.14520 5.15759 5.22000 5.30619 5.35138 5.43800 5.51510 5.59672 5.68879 5.75650 6.06826 6.10815 6.14922 6.15266 6.18036 6.22792 6.26874 6.32333 6.61497 6.69262 6.83732 7.00185 7.07205 7.26545 7.32520 7.36451 7.57565 8.12446 8.28543 8.56765 8.76766 8.98072 9.38554 10.87909 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.002396 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.690053 B =11684.163798 C =12009.106368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.240 3.760 4 H 0.049 0.951 5 C -0.530 4.530 6 H 0.079 0.921 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.259 1.259 12 H -0.286 1.286 13 N -0.701 5.701 14 C 0.483 3.517 15 O -0.543 6.543 16 C 0.109 3.891 17 N -0.577 5.577 18 C 0.089 3.911 19 C 0.656 3.344 20 O -0.569 6.569 21 O -0.361 6.361 22 C 0.128 3.872 23 C -0.096 4.096 24 C -0.092 4.092 25 C -0.124 4.124 26 C -0.111 4.111 27 C -0.125 4.125 28 C -0.094 4.094 29 H 0.029 0.971 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.267 0.733 35 H 0.394 0.606 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.940 8.486 -11.580 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.137 3.863 4 H 0.067 0.933 5 C -0.568 4.568 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.699 3.301 10 H -0.200 1.200 11 H -0.183 1.183 12 H -0.212 1.212 13 N -0.350 5.350 14 C 0.267 3.733 15 O -0.421 6.421 16 C -0.017 4.017 17 N -0.316 5.316 18 C -0.054 4.054 19 C 0.410 3.590 20 O -0.458 6.458 21 O -0.276 6.276 22 C 0.054 3.946 23 C -0.096 4.096 24 C -0.110 4.110 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.143 4.143 28 C -0.112 4.112 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.227 0.773 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -23.344 8.095 -10.896 27.004 hybrid contribution -0.056 0.069 0.591 0.597 sum -23.400 8.165 -10.306 26.841 Atomic orbital electron populations 1.21886 0.97332 0.98832 1.02036 1.22083 0.93711 0.99471 1.01155 1.19127 0.95409 0.89046 0.82694 0.93349 1.21016 0.88657 1.52175 0.94956 0.90298 1.24917 0.94862 0.93701 0.98846 1.69880 1.09596 1.48726 1.24352 0.86920 0.81328 0.79411 0.82408 1.19956 1.18321 1.21241 1.46510 1.14338 1.55935 1.18259 1.20889 0.82974 0.79861 0.89619 1.90666 1.50673 1.59712 1.41098 1.21442 0.81464 1.00709 0.98085 1.46013 1.03487 1.14710 1.67383 1.21762 1.03558 0.80792 0.99246 1.17882 0.80849 0.83018 0.77227 1.90998 1.85295 1.17810 1.51684 1.86278 1.13972 1.46042 1.81282 1.21685 0.80438 0.91081 1.01422 1.19556 0.94945 1.00200 0.94904 1.21176 0.94908 0.98487 0.96447 1.21185 0.96046 0.97705 0.99245 1.21245 0.99811 0.98449 0.93386 1.21158 0.95402 0.99985 0.97798 1.21108 0.95738 0.95652 0.98706 0.95234 0.93416 0.92869 0.92968 0.92226 0.92266 0.77322 0.87044 0.86963 0.92485 0.90457 0.90603 0.90261 0.90136 0.85569 0.85690 0.85897 0.85762 0.85738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.53 37.16 0.32 -2.75 16 2 C -0.13 -2.80 5.54 -26.73 -0.15 -2.95 16 3 C 0.24 5.64 1.82 -69.08 -0.13 5.52 16 4 H 0.05 1.25 4.92 -51.93 -0.26 1.00 16 5 C -0.53 -14.06 9.05 -34.44 -0.31 -14.37 16 6 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 8 N -0.89 -26.01 13.96 55.43 0.77 -25.23 16 9 Si 0.87 21.53 26.69 -169.99 -4.54 17.00 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.26 -6.34 6.88 56.52 0.39 -5.95 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.70 -13.69 5.03 -54.93 -0.28 -13.97 16 14 C 0.48 9.02 6.50 -10.98 -0.07 8.94 16 15 O -0.54 -12.06 13.57 5.56 0.08 -11.99 16 16 C 0.11 1.50 5.89 -5.19 -0.03 1.47 16 17 N -0.58 -8.22 2.36 -188.80 -0.45 -8.66 16 18 C 0.09 0.99 10.44 59.85 0.63 1.62 16 19 C 0.66 10.43 8.39 54.05 0.45 10.89 16 20 O -0.57 -10.54 15.71 -19.29 -0.30 -10.84 16 21 O -0.36 -4.98 9.03 -40.32 -0.36 -5.35 16 22 C 0.13 1.47 5.60 36.00 0.20 1.67 16 23 C -0.10 -0.96 5.52 -104.63 -0.58 -1.54 16 24 C -0.09 -0.87 9.70 -39.58 -0.38 -1.25 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 26 C -0.11 -0.80 10.05 -39.59 -0.40 -1.20 16 27 C -0.13 -0.93 10.05 -39.58 -0.40 -1.32 16 28 C -0.09 -0.80 9.70 -39.59 -0.38 -1.19 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 1.07 7.88 -51.93 -0.41 0.66 16 31 H 0.05 1.17 5.63 -51.93 -0.29 0.88 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.37 7.90 -51.93 -0.41 0.96 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.39 6.63 8.59 -40.82 -0.35 6.28 16 36 H 0.11 1.14 8.07 -51.93 -0.42 0.72 16 37 H 0.11 1.49 7.42 -51.93 -0.39 1.10 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.88 7.37 -51.93 -0.38 0.50 16 40 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 41 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 42 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 47 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -34.57 392.84 -8.00 -42.58 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.12 Total: 6.23 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.73 Total: 4.32 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.05 Total: -47.87 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.59 Total: -28.17 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.54 Total: 17.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.57 -8.00 -42.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191310233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.565 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds