Wall clock time and date at job start Tue Mar 31 2020 18:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50697 * 109.47256 * 174.35001 * 3 2 1 6 6 H 1.08002 * 119.99408 * 87.46315 * 5 3 2 7 7 C 1.37874 * 120.00506 * 267.46474 * 5 3 2 8 8 N 1.31513 * 120.00322 * 176.06898 * 7 5 3 9 9 Si 1.86801 * 119.99737 * 356.07254 * 7 5 3 10 10 H 1.48507 * 109.47191 * 275.08923 * 9 7 5 11 11 H 1.48500 * 109.47138 * 35.08466 * 9 7 5 12 12 H 1.48498 * 109.47268 * 155.09112 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34776 * 119.99949 * 84.99728 * 13 3 2 15 15 O 1.21276 * 120.00026 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99927 * 179.97438 * 14 13 3 17 17 N 1.46500 * 109.47168 * 180.02562 * 16 14 13 18 18 C 1.46502 * 119.99885 * 90.00003 * 17 16 14 19 19 C 1.34776 * 119.99784 * 270.00100 * 17 16 14 20 20 O 1.21516 * 120.00373 * 359.97438 * 19 17 16 21 21 O 1.34637 * 120.00109 * 179.97438 * 19 17 16 22 22 C 1.45198 * 117.00502 * 179.97438 * 21 19 17 23 23 C 1.50694 * 109.47201 * 180.02562 * 22 21 19 24 24 C 1.38236 * 119.99845 * 269.72605 * 23 22 21 25 25 C 1.38239 * 119.99535 * 179.76737 * 24 23 22 26 26 C 1.38230 * 120.00280 * 0.51195 * 25 24 23 27 27 C 1.38236 * 119.99796 * 359.74280 * 26 25 24 28 28 C 1.38230 * 120.00110 * 90.00537 * 23 22 21 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 31 31 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 32 32 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 33 33 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 34 34 H 0.96998 * 119.99645 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99925 * 264.99957 * 13 3 2 36 36 H 1.08995 * 109.47086 * 300.00436 * 16 14 13 37 37 H 1.08995 * 109.46903 * 60.00037 * 16 14 13 38 38 H 1.09000 * 109.46885 * 90.00137 * 18 17 16 39 39 H 1.09003 * 109.46670 * 209.99744 * 18 17 16 40 40 H 1.08995 * 109.47118 * 329.99625 * 18 17 16 41 41 H 1.09005 * 109.47021 * 300.00550 * 22 21 19 42 42 H 1.08996 * 109.46642 * 60.00298 * 22 21 19 43 43 H 1.07997 * 120.00155 * 0.02562 * 24 23 22 44 44 H 1.07998 * 119.99964 * 180.23193 * 25 24 23 45 45 H 1.07999 * 120.00417 * 179.72320 * 26 25 24 46 46 H 1.08007 * 119.99920 * 179.97438 * 27 26 25 47 47 H 1.08006 * 120.00074 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4449 0.1399 6 1 4.1647 1.3736 -0.7386 7 6 4.1163 1.5379 1.3891 8 7 5.4229 1.4622 1.5183 9 14 3.0406 1.7713 2.8984 10 1 2.7489 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2554 4.0966 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6591 -1.3886 15 8 -0.3345 2.6309 -0.4639 16 6 0.0650 3.3285 -2.6828 17 7 -1.2949 3.8620 -2.5713 18 6 -1.5084 5.2276 -2.0858 19 6 -2.3494 3.0964 -2.9153 20 8 -2.1722 1.9638 -3.3185 21 8 -3.5992 3.5864 -2.8124 22 6 -4.6865 2.7061 -3.2009 23 6 -6.0007 3.4211 -3.0203 24 6 -6.6751 3.3341 -1.8167 25 6 -7.8783 3.9940 -1.6495 26 6 -8.4122 4.7322 -2.6891 27 6 -7.7403 4.8148 -3.8943 28 6 -6.5346 4.1593 -4.0599 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8279 1.5280 2.3972 35 1 2.2932 2.1156 -1.9977 36 1 0.7586 4.1432 -2.8907 37 1 0.1051 2.6014 -3.4938 38 1 -1.5024 5.9181 -2.9292 39 1 -2.4700 5.2855 -1.5756 40 1 -0.7120 5.4951 -1.3915 41 1 -4.5684 2.4225 -4.2468 42 1 -4.6704 1.8120 -2.5779 43 1 -6.2601 2.7540 -1.0058 44 1 -8.4034 3.9291 -0.7080 45 1 -9.3543 5.2440 -2.5599 46 1 -8.1576 5.3913 -4.7068 47 1 -6.0096 4.2240 -5.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191310233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:32 Heat of formation + Delta-G solvation = -108.926311 kcal Electronic energy + Delta-G solvation = -28712.204731 eV Core-core repulsion = 24666.453508 eV Total energy + Delta-G solvation = -4045.751222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81675 -40.69515 -40.04912 -37.94113 -37.02834 -36.37725 -34.39029 -33.34138 -33.07309 -31.85875 -30.25779 -28.97083 -28.03283 -26.76121 -24.71180 -23.54593 -22.95849 -22.24945 -21.55880 -21.19718 -19.39967 -19.14756 -18.42854 -18.09534 -17.61794 -17.36814 -17.27527 -16.35866 -16.19067 -16.04489 -15.93925 -15.67794 -15.01668 -14.79765 -14.72198 -14.37600 -14.25607 -14.11988 -13.90044 -13.78524 -13.75401 -13.67626 -13.34498 -13.32583 -12.96394 -12.84457 -12.56424 -12.40013 -12.11683 -12.08827 -11.87480 -11.75278 -11.71021 -11.69511 -11.21963 -10.99366 -10.84415 -9.88158 -9.87475 -9.83694 -9.68969 -8.38403 -6.43508 0.11044 0.44532 1.12153 1.28096 1.32806 1.43956 1.65472 1.80010 2.26823 2.49079 2.72508 3.02677 3.06509 3.66817 3.77595 3.95764 4.04612 4.14094 4.20294 4.23453 4.24840 4.28236 4.29294 4.36664 4.37675 4.52259 4.57711 4.67434 4.68460 4.80663 4.90255 4.97801 5.05551 5.09917 5.14935 5.18566 5.22385 5.26381 5.41882 5.49477 5.51813 5.55938 5.57172 5.77752 6.02653 6.13726 6.15397 6.61665 6.91241 7.12559 7.22274 7.50217 8.76419 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.002396 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.690053 B =11684.163798 C =12009.106368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.123 4.123 3 C 0.246 3.754 4 H 0.028 0.972 5 C -0.523 4.523 6 H 0.059 0.941 7 C 0.035 3.965 8 N -0.929 5.929 9 Si 0.923 3.077 10 H -0.273 1.273 11 H -0.259 1.259 12 H -0.280 1.280 13 N -0.701 5.701 14 C 0.481 3.519 15 O -0.580 6.580 16 C 0.116 3.884 17 N -0.578 5.578 18 C 0.087 3.913 19 C 0.649 3.351 20 O -0.603 6.603 21 O -0.360 6.360 22 C 0.127 3.873 23 C -0.113 4.113 24 C -0.111 4.111 25 C -0.130 4.130 26 C -0.110 4.110 27 C -0.126 4.126 28 C -0.101 4.101 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.270 0.730 35 H 0.408 0.592 36 H 0.157 0.843 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.120 0.880 44 H 0.142 0.858 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.948 9.966 -12.658 29.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.162 4.162 3 C 0.142 3.858 4 H 0.046 0.954 5 C -0.562 4.562 6 H 0.078 0.922 7 C -0.166 4.166 8 N -0.568 5.568 9 Si 0.749 3.251 10 H -0.199 1.199 11 H -0.183 1.183 12 H -0.205 1.205 13 N -0.351 5.351 14 C 0.266 3.734 15 O -0.461 6.461 16 C -0.009 4.009 17 N -0.316 5.316 18 C -0.055 4.055 19 C 0.404 3.596 20 O -0.494 6.494 21 O -0.274 6.274 22 C 0.053 3.947 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.148 4.148 26 C -0.128 4.128 27 C -0.144 4.144 28 C -0.119 4.119 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.243 0.757 36 H 0.174 0.826 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.139 0.861 44 H 0.160 0.840 45 H 0.168 0.832 46 H 0.168 0.832 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.365 9.607 -11.998 29.659 hybrid contribution 0.487 -0.366 0.861 1.055 sum -24.878 9.241 -11.137 28.781 Atomic orbital electron populations 1.21718 0.96313 0.99852 1.00758 1.22013 0.94451 0.98612 1.01145 1.18813 0.93257 0.89828 0.83945 0.95419 1.21197 0.90114 1.50718 0.94121 0.92238 1.25546 0.95686 0.93993 1.01370 1.69971 1.10987 1.50738 1.25073 0.86110 0.79865 0.79235 0.79924 1.19853 1.18324 1.20511 1.46249 1.15424 1.56067 1.17367 1.21717 0.81806 0.78927 0.90901 1.90652 1.51549 1.60919 1.42957 1.21529 0.82202 1.02188 0.94972 1.46233 1.03188 1.15513 1.66707 1.21947 1.03252 0.79734 1.00565 1.18163 0.81632 0.82804 0.77001 1.90964 1.85870 1.19273 1.53306 1.86296 1.13667 1.46387 1.81068 1.21811 0.80648 0.90791 1.01431 1.19534 0.94394 1.01529 0.95909 1.21289 0.95933 0.99322 0.96355 1.21451 0.95537 0.97377 1.00439 1.21624 1.00591 0.97686 0.92895 1.21507 0.94756 0.99483 0.98669 1.21314 0.96443 0.95451 0.98729 0.93021 0.95048 0.93694 0.92020 0.93185 0.92086 0.75699 0.82554 0.86046 0.89244 0.91170 0.90391 0.89619 0.91439 0.86146 0.83983 0.83243 0.83207 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.42 8.53 71.98 0.61 -4.81 16 2 C -0.12 -5.43 5.54 30.59 0.17 -5.26 16 3 C 0.25 11.49 1.82 44.24 0.08 11.57 16 4 H 0.03 1.43 4.92 -2.39 -0.01 1.42 16 5 C -0.52 -27.87 9.05 25.60 0.23 -27.63 16 6 H 0.06 3.35 8.06 -2.91 -0.02 3.32 16 7 C 0.03 1.93 5.47 84.65 0.46 2.39 16 8 N -0.93 -54.95 13.96 21.45 0.30 -54.65 16 9 Si 0.92 44.66 26.69 68.60 1.83 46.49 16 10 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.26 -12.41 6.88 99.48 0.68 -11.73 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 N -0.70 -26.68 5.03 -446.10 -2.24 -28.93 16 14 C 0.48 17.37 6.50 87.66 0.57 17.94 16 15 O -0.58 -25.54 13.57 -3.02 -0.04 -25.58 16 16 C 0.12 2.95 5.89 85.63 0.50 3.46 16 17 N -0.58 -15.48 2.36 -981.66 -2.32 -17.80 16 18 C 0.09 1.74 10.44 127.77 1.33 3.07 16 19 C 0.65 20.29 8.39 129.79 1.09 21.38 16 20 O -0.60 -22.27 15.71 19.79 0.31 -21.96 16 21 O -0.36 -9.86 9.03 -55.47 -0.50 -10.36 16 22 C 0.13 2.97 5.60 71.23 0.40 3.37 16 23 C -0.11 -2.24 5.52 -19.87 -0.11 -2.35 16 24 C -0.11 -2.08 9.70 22.27 0.22 -1.87 16 25 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 26 C -0.11 -1.31 10.05 22.27 0.22 -1.09 16 27 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 28 C -0.10 -1.60 9.70 22.27 0.22 -1.38 16 29 H 0.05 1.90 8.14 -2.38 -0.02 1.89 16 30 H 0.03 1.39 7.88 -2.39 -0.02 1.37 16 31 H 0.04 1.95 5.63 -2.39 -0.01 1.94 16 32 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.05 2.28 7.90 -2.38 -0.02 2.26 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.41 13.20 8.59 -92.71 -0.80 12.41 16 36 H 0.16 2.58 8.07 -2.39 -0.02 2.56 16 37 H 0.12 2.95 7.42 -2.39 -0.02 2.93 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.52 7.37 -2.39 -0.02 1.50 16 40 H 0.08 1.55 8.07 -2.39 -0.02 1.53 16 41 H 0.09 1.83 8.08 -2.38 -0.02 1.81 16 42 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 43 H 0.12 2.27 8.06 -2.91 -0.02 2.24 16 44 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 45 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 46 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 47 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -75.42 392.84 3.94 -71.47 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.16 Total: 25.53 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 6.45 Total: 15.78 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -4.26 Total: -101.38 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: -0.23 Total: -57.90 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.83 Total: 46.49 kcal Total: -75.42 3.94 -71.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191310233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.453 kcal (2) G-P(sol) polarization free energy of solvation -75.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds