Wall clock time and date at job start Tue Mar 31 2020 18:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47130 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47127 * 119.99459 * 9 7 5 12 12 H 1.48498 * 109.47285 * 239.99667 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 N 1.46500 * 109.47299 * 180.02562 * 16 14 13 18 18 C 1.46501 * 119.99628 * 89.99912 * 17 16 14 19 19 C 1.34768 * 120.00053 * 270.00037 * 17 16 14 20 20 O 1.21513 * 120.00144 * 0.02562 * 19 17 16 21 21 O 1.34635 * 119.99896 * 180.02562 * 19 17 16 22 22 C 1.45203 * 117.00156 * 180.02562 * 21 19 17 23 23 C 1.50694 * 109.47515 * 179.97438 * 22 21 19 24 24 C 1.38239 * 120.00200 * 269.73081 * 23 22 21 25 25 C 1.38233 * 119.99914 * 179.76357 * 24 23 22 26 26 C 1.38234 * 119.99905 * 0.50753 * 25 24 23 27 27 C 1.38224 * 120.00249 * 359.73962 * 26 25 24 28 28 C 1.38233 * 120.00047 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 30 30 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 32 32 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 33 33 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 34 34 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 36 36 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 37 37 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 38 38 H 1.09004 * 109.46825 * 90.00185 * 18 17 16 39 39 H 1.08994 * 109.47220 * 210.00202 * 18 17 16 40 40 H 1.08998 * 109.47573 * 330.00194 * 18 17 16 41 41 H 1.08993 * 109.47176 * 300.00234 * 22 21 19 42 42 H 1.09006 * 109.47018 * 59.99436 * 22 21 19 43 43 H 1.07998 * 119.99865 * 359.97438 * 24 23 22 44 44 H 1.08002 * 119.99541 * 180.22763 * 25 24 23 45 45 H 1.08010 * 119.99667 * 179.72946 * 26 25 24 46 46 H 1.08003 * 120.00302 * 179.97438 * 27 26 25 47 47 H 1.08007 * 120.00248 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5191 -1.4628 12 1 6.4000 1.6157 -2.6092 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3355 2.6412 0.4309 16 6 0.0388 3.3434 2.6527 17 7 -1.3177 3.8812 2.5229 18 6 -2.4713 3.0539 2.8848 19 6 -1.5043 5.1369 2.0705 20 8 -0.5474 5.8229 1.7699 21 8 -2.7509 5.6313 1.9517 22 6 -2.8766 6.9909 1.4575 23 6 -4.3339 7.3688 1.3915 24 6 -5.0573 7.1341 0.2372 25 6 -6.3953 7.4763 0.1784 26 6 -7.0073 8.0628 1.2704 27 6 -6.2826 8.3022 2.4229 28 6 -4.9458 7.9556 2.4834 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8293 -0.0617 -2.9496 35 1 2.2720 2.1230 1.9979 36 1 0.0655 2.6181 3.4660 37 1 0.7332 4.1557 2.8675 38 1 -2.7092 3.2031 3.9380 39 1 -3.3285 3.3390 2.2748 40 1 -2.2347 2.0043 2.7108 41 1 -2.3544 7.6716 2.1297 42 1 -2.4389 7.0573 0.4613 43 1 -4.5779 6.6802 -0.6176 44 1 -6.9614 7.2895 -0.7222 45 1 -8.0516 8.3342 1.2229 46 1 -6.7607 8.7608 3.2759 47 1 -4.3795 8.1430 3.3837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191310250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:36 Heat of formation + Delta-G solvation = -86.592794 kcal Electronic energy + Delta-G solvation = -28516.640539 eV Core-core repulsion = 24471.857771 eV Total energy + Delta-G solvation = -4044.782768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.59496 -39.50616 -38.85933 -36.70256 -35.49677 -34.77554 -32.42842 -32.32778 -31.21374 -31.05333 -28.75146 -27.10842 -26.84311 -25.64429 -23.04920 -22.89286 -21.76984 -21.15306 -20.02933 -19.31878 -18.07644 -17.48403 -17.32589 -16.73235 -16.46006 -15.78599 -15.47475 -15.31150 -15.08165 -14.89959 -14.50557 -14.09058 -13.77843 -13.69862 -13.58588 -13.13532 -12.90071 -12.70122 -12.69146 -12.56882 -12.41939 -12.27534 -11.65777 -11.39704 -11.38805 -11.28604 -11.25584 -10.95182 -10.82391 -10.64930 -10.44935 -10.30361 -10.17853 -9.64691 -9.45177 -9.22453 -9.18556 -9.02375 -8.53793 -8.43552 -7.80575 -6.10842 -4.19913 0.85224 1.10068 2.19306 2.92736 3.24857 3.32783 3.35307 3.39721 3.44498 3.93412 4.18589 4.41172 4.50021 4.52395 4.70250 4.81875 4.98585 5.10722 5.18380 5.19420 5.21130 5.27095 5.35331 5.40011 5.52388 5.57199 5.64201 5.73398 5.79025 6.11249 6.19120 6.24452 6.27688 6.34276 6.37694 6.43673 6.64809 6.65871 7.02146 7.19710 7.32721 7.37065 7.46846 7.63315 7.74309 7.92316 8.19335 8.34667 8.68181 8.80023 9.15054 9.47425 10.94550 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020699 B = 0.002200 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.385458 B =12723.183655 C =12811.061463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.065 3.935 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.707 5.707 14 C 0.484 3.516 15 O -0.539 6.539 16 C 0.108 3.892 17 N -0.577 5.577 18 C 0.090 3.910 19 C 0.656 3.344 20 O -0.568 6.568 21 O -0.361 6.361 22 C 0.128 3.872 23 C -0.095 4.095 24 C -0.092 4.092 25 C -0.124 4.124 26 C -0.111 4.111 27 C -0.126 4.126 28 C -0.094 4.094 29 H 0.048 0.952 30 H 0.022 0.978 31 H 0.036 0.964 32 H 0.099 0.901 33 H 0.031 0.969 34 H 0.263 0.737 35 H 0.388 0.612 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.902 11.232 12.136 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.267 3.733 15 O -0.417 6.417 16 C -0.017 4.017 17 N -0.316 5.316 18 C -0.053 4.053 19 C 0.410 3.590 20 O -0.457 6.457 21 O -0.276 6.276 22 C 0.053 3.947 23 C -0.095 4.095 24 C -0.110 4.110 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.144 4.144 28 C -0.112 4.112 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.220 0.780 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.181 11.377 11.147 24.171 hybrid contribution 1.334 -0.088 0.126 1.343 sum -16.847 11.289 11.273 23.202 Atomic orbital electron populations 1.21817 0.98427 0.97900 1.01082 1.21929 0.92528 0.99838 1.02275 1.18773 0.94203 0.89068 0.81027 0.93426 1.21279 0.90741 1.38760 1.06281 0.91990 1.24895 0.98618 0.94865 0.95397 1.69907 1.35010 1.37750 1.09364 0.86401 0.84895 0.77698 0.78147 1.19722 1.20915 1.20914 1.46456 1.14582 1.55908 1.18642 1.20765 0.83225 0.79683 0.89673 1.90676 1.51565 1.59369 1.40056 1.21443 0.82814 1.00051 0.97422 1.45991 1.07491 1.10821 1.67277 1.21743 0.87961 0.95559 1.00004 1.17878 0.81625 0.82597 0.76910 1.91007 1.41074 1.59304 1.54275 1.86271 1.29080 1.32265 1.79977 1.21688 0.92845 0.79400 1.00745 1.19564 0.94481 1.00631 0.94870 1.21188 0.94246 0.97800 0.97756 1.21186 0.94786 0.99277 0.98921 1.21239 0.99929 0.98356 0.93408 1.21147 0.94216 1.00722 0.98295 1.21107 0.94963 0.97590 0.97571 0.93254 0.95900 0.94468 0.88312 0.95023 0.92658 0.77956 0.87385 0.87063 0.92597 0.90447 0.90701 0.90271 0.90082 0.85511 0.85683 0.85922 0.85798 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.52 37.16 0.32 -2.65 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.42 7.57 -51.93 -0.39 1.03 16 5 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.90 11.29 55.43 0.63 -24.27 16 9 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.71 -14.44 5.02 -54.93 -0.28 -14.71 16 14 C 0.48 9.49 6.47 -10.98 -0.07 9.41 16 15 O -0.54 -12.65 13.60 5.56 0.08 -12.58 16 16 C 0.11 1.57 5.89 -5.19 -0.03 1.54 16 17 N -0.58 -8.57 2.36 -188.80 -0.45 -9.02 16 18 C 0.09 1.03 10.44 59.85 0.62 1.66 16 19 C 0.66 10.98 8.39 54.05 0.45 11.43 16 20 O -0.57 -11.18 15.71 -19.28 -0.30 -11.49 16 21 O -0.36 -5.21 9.03 -40.31 -0.36 -5.58 16 22 C 0.13 1.55 5.60 36.00 0.20 1.75 16 23 C -0.10 -1.00 5.52 -104.62 -0.58 -1.58 16 24 C -0.09 -0.91 9.70 -39.58 -0.38 -1.29 16 25 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 26 C -0.11 -0.84 10.05 -39.59 -0.40 -1.24 16 27 C -0.13 -0.97 10.05 -39.59 -0.40 -1.37 16 28 C -0.09 -0.84 9.70 -39.58 -0.38 -1.23 16 29 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.77 5.67 -51.93 -0.29 0.48 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.39 6.74 8.54 -40.82 -0.35 6.39 16 36 H 0.11 1.13 8.07 -51.93 -0.42 0.71 16 37 H 0.11 1.58 7.42 -51.93 -0.39 1.20 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.91 7.37 -51.93 -0.38 0.53 16 40 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 41 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 43 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 47 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 393.40 15.07 5.93 5.93 Total: -1.00 -34.23 393.40 -8.64 -42.88 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.12 Total: 7.33 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -1.74 Total: 5.75 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.10 Total: -48.00 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.59 Total: -29.64 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.23 -8.64 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191310250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.718 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds