Wall clock time and date at job start Tue Mar 31 2020 18:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47191 * 2 1 4 4 H 1.08999 * 109.47224 * 55.00040 * 3 2 1 5 5 C 1.52997 * 109.47148 * 174.99988 * 3 2 1 6 6 N 1.46503 * 109.47212 * 295.00381 * 3 2 1 7 7 C 1.34769 * 120.00009 * 154.99913 * 6 3 2 8 8 O 1.21274 * 120.00234 * 0.02562 * 7 6 3 9 9 C 1.50710 * 119.99719 * 179.97438 * 7 6 3 10 10 C 1.53002 * 109.46980 * 180.02562 * 9 7 6 11 11 N 1.46495 * 109.47070 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00095 * 180.27252 * 11 10 9 13 13 O 1.21594 * 119.99690 * 359.72278 * 12 11 10 14 14 C 1.47532 * 120.00024 * 179.72007 * 12 11 10 15 15 C 1.39670 * 120.19847 * 0.02562 * 14 12 11 16 16 C 1.37820 * 119.91890 * 179.97438 * 15 14 12 17 17 C 1.38573 * 120.32831 * 0.02562 * 16 15 14 18 18 C 1.38025 * 120.39895 * 0.02562 * 17 16 15 19 19 C 1.38836 * 120.07033 * 359.68101 * 18 17 16 20 20 O 1.35525 * 120.16327 * 180.29712 * 19 18 17 21 21 C 1.34813 * 116.99864 * 354.40229 * 20 19 18 22 22 H 1.08004 * 120.00166 * 5.06080 * 21 20 19 23 23 C 1.38693 * 120.00063 * 185.06551 * 21 20 19 24 24 N 1.31521 * 119.99925 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00048 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47260 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47232 * 120.00058 * 25 23 21 28 28 H 1.48498 * 109.47331 * 239.99893 * 25 23 21 29 29 H 1.08996 * 109.47255 * 60.00424 * 1 2 3 30 30 H 1.09008 * 109.47219 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47023 * 300.00078 * 1 2 3 32 32 H 1.09004 * 109.47023 * 239.99922 * 2 1 3 33 33 H 1.09005 * 109.47197 * 119.99841 * 2 1 3 34 34 H 1.09008 * 109.47176 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.47538 * 299.99803 * 5 3 2 36 36 H 1.08999 * 109.47016 * 59.99924 * 5 3 2 37 37 H 0.97001 * 119.99609 * 334.99180 * 6 3 2 38 38 H 1.08997 * 109.46592 * 60.00132 * 9 7 6 39 39 H 1.09000 * 109.47121 * 300.00031 * 9 7 6 40 40 H 1.08995 * 109.47584 * 59.99480 * 10 9 7 41 41 H 1.09000 * 109.46962 * 299.99813 * 10 9 7 42 42 H 0.97001 * 119.99820 * 359.97438 * 11 10 9 43 43 H 1.07996 * 120.03784 * 359.97438 * 15 14 12 44 44 H 1.08010 * 119.83681 * 179.97438 * 16 15 14 45 45 H 1.08004 * 119.80532 * 180.02562 * 17 16 15 46 46 H 1.07998 * 119.96677 * 179.97438 * 18 17 16 47 47 H 0.97006 * 119.99983 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5255 3.4384 -1.2995 8 8 1.7327 4.1028 -0.3064 9 6 1.1273 4.1122 -2.5874 10 6 1.0565 5.6251 -2.3707 11 7 0.6688 6.2801 -3.6224 12 6 0.5478 7.6215 -3.6717 13 8 0.7554 8.2877 -2.6759 14 6 0.1634 8.2816 -4.9339 15 6 -0.0766 7.5204 -6.0801 16 6 -0.4358 8.1429 -7.2560 17 6 -0.5601 9.5221 -7.3080 18 6 -0.3252 10.2874 -6.1836 19 6 0.0318 9.6770 -4.9888 20 8 0.2570 10.4261 -3.8821 21 6 0.2319 11.7654 -4.0342 22 1 -0.0417 12.1958 -4.9862 23 6 0.5575 12.5906 -2.9681 24 7 0.8903 12.0665 -1.8086 25 14 0.5234 14.4464 -3.1789 26 1 0.1195 14.7793 -4.5686 27 1 -0.4516 15.0350 -2.2261 28 1 1.8747 15.0001 -2.9096 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9282 2.4720 0.1253 35 1 3.8532 0.9570 1.0571 36 1 3.9994 0.9052 -0.7161 37 1 1.4871 1.5661 -2.0463 38 1 0.1513 3.7439 -2.9034 39 1 1.8662 3.8900 -3.3573 40 1 2.0326 5.9931 -2.0548 41 1 0.3178 5.8477 -1.6007 42 1 0.5035 5.7487 -4.4169 43 1 0.0194 6.4452 -6.0449 44 1 -0.6207 7.5530 -8.1417 45 1 -0.8425 10.0011 -8.2339 46 1 -0.4236 11.3618 -6.2321 47 1 1.1177 12.6437 -1.0628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194184890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:59 Heat of formation + Delta-G solvation = -84.698543 kcal Electronic energy + Delta-G solvation = -27864.597411 eV Core-core repulsion = 23819.896783 eV Total energy + Delta-G solvation = -4044.700628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.14893 -39.49790 -38.03668 -36.79354 -36.30539 -34.57415 -32.72650 -32.31033 -31.32732 -30.29486 -29.41513 -28.88892 -25.42280 -24.73920 -23.86974 -22.57892 -21.41573 -21.08141 -20.63322 -19.87686 -18.01997 -17.59092 -17.22492 -16.54086 -16.05526 -15.90035 -15.24632 -14.68805 -14.62812 -14.40469 -14.25168 -14.12121 -14.08235 -13.86276 -13.74419 -13.56298 -13.48611 -12.90981 -12.63414 -12.51829 -12.44041 -12.15106 -11.80761 -11.70832 -11.68651 -11.49605 -11.45387 -11.22345 -11.09624 -11.07205 -10.88713 -10.75483 -10.41849 -9.99571 -9.53411 -9.33489 -8.85624 -8.80747 -8.51394 -8.24629 -7.28413 -6.40839 -4.01126 1.74396 2.33787 2.50249 2.84973 3.14127 3.15084 3.20903 3.78774 3.79963 3.96250 4.30125 4.59508 4.61977 4.66419 4.67363 4.89154 4.97232 5.06640 5.09884 5.19084 5.20511 5.23270 5.30683 5.40211 5.48491 5.51507 5.53787 5.55951 5.74180 5.75071 5.82356 5.93914 6.03205 6.03807 6.13987 6.23687 6.32092 6.58312 6.71532 6.93303 6.97049 7.08145 7.24908 7.26562 7.32047 7.71648 7.95244 8.06556 8.15737 8.98356 9.15345 9.70983 10.72867 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.002280 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.308870 B =12276.040193 C =13823.358462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C 0.139 3.861 4 H 0.089 0.911 5 C -0.165 4.165 6 N -0.729 5.729 7 C 0.518 3.482 8 O -0.528 6.528 9 C -0.152 4.152 10 C 0.140 3.860 11 N -0.747 5.747 12 C 0.553 3.447 13 O -0.497 6.497 14 C -0.226 4.226 15 C -0.039 4.039 16 C -0.232 4.232 17 C -0.051 4.051 18 C -0.238 4.238 19 C 0.188 3.812 20 O -0.123 6.123 21 C -0.404 4.404 22 H 0.095 0.905 23 C 0.044 3.956 24 N -0.831 5.831 25 Si 0.941 3.059 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.399 0.601 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.390 0.610 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.132 0.868 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 -23.409 -3.923 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.034 3.966 4 H 0.107 0.893 5 C -0.223 4.223 6 N -0.382 5.382 7 C 0.303 3.697 8 O -0.403 6.403 9 C -0.192 4.192 10 C 0.016 3.984 11 N -0.403 5.403 12 C 0.342 3.658 13 O -0.370 6.370 14 C -0.231 4.231 15 C -0.058 4.058 16 C -0.251 4.251 17 C -0.070 4.070 18 C -0.257 4.257 19 C 0.128 3.872 20 O -0.021 6.021 21 C -0.480 4.480 22 H 0.112 0.888 23 C -0.164 4.164 24 N -0.462 5.462 25 Si 0.765 3.235 26 H -0.190 1.190 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.233 0.767 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.224 0.776 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.149 0.851 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.747 -22.348 -1.881 22.439 hybrid contribution -0.189 0.267 -1.080 1.129 sum 0.558 -22.080 -2.961 22.285 Atomic orbital electron populations 1.21783 0.95242 1.01683 1.02422 1.21834 0.96615 0.95403 1.02995 1.21006 0.94962 0.92957 0.87660 0.89320 1.22189 0.95359 1.02889 1.01883 1.46097 1.71544 1.06989 1.13586 1.20499 0.76689 0.82076 0.90395 1.90773 1.49000 1.63855 1.36713 1.21834 1.04021 0.97030 0.96352 1.20839 1.02237 0.88295 0.87076 1.45863 1.74419 1.07408 1.12639 1.18221 0.77739 0.81014 0.88801 1.90971 1.47310 1.63141 1.35590 1.18854 1.18439 0.91409 0.94413 1.20739 0.95534 0.97617 0.91862 1.20448 1.12366 0.94599 0.97694 1.20890 0.95403 0.93749 0.96963 1.21158 1.10505 1.00888 0.93137 1.19286 0.90815 0.90076 0.86976 1.84181 1.72416 1.18553 1.26960 1.21544 1.48542 0.78241 0.99649 0.88807 1.25402 0.95964 1.00529 0.94520 1.70147 1.38863 1.35931 1.01242 0.85658 0.78394 0.80548 0.78855 1.18981 1.20026 1.20016 0.92501 0.92574 0.92481 0.91446 0.90428 0.91822 0.91693 0.92545 0.76737 0.88309 0.88297 0.90996 0.91006 0.77563 0.87089 0.87325 0.87225 0.85085 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.80 37.16 0.36 -0.48 16 2 C -0.13 -0.67 5.47 -26.73 -0.15 -0.81 16 3 C 0.14 1.06 2.57 -67.93 -0.17 0.89 16 4 H 0.09 0.89 7.58 -51.93 -0.39 0.50 16 5 C -0.16 -1.26 9.48 37.16 0.35 -0.91 16 6 N -0.73 -5.54 4.53 -53.81 -0.24 -5.78 16 7 C 0.52 5.83 7.79 -10.98 -0.09 5.75 16 8 O -0.53 -8.61 15.64 5.56 0.09 -8.53 16 9 C -0.15 -1.44 5.81 -27.88 -0.16 -1.60 16 10 C 0.14 2.15 4.96 -4.04 -0.02 2.13 16 11 N -0.75 -12.04 5.51 -61.35 -0.34 -12.38 16 12 C 0.55 12.45 7.76 -12.47 -0.10 12.35 16 13 O -0.50 -14.15 15.17 -16.57 -0.25 -14.40 16 14 C -0.23 -4.96 5.89 -104.81 -0.62 -5.57 16 15 C -0.04 -0.65 9.53 -39.20 -0.37 -1.03 16 16 C -0.23 -3.76 10.02 -39.61 -0.40 -4.16 16 17 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 18 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 19 C 0.19 4.74 6.66 -38.60 -0.26 4.48 16 20 O -0.12 -3.70 7.84 -21.06 -0.17 -3.86 16 21 C -0.40 -11.61 9.49 30.90 0.29 -11.32 16 22 H 0.09 2.44 5.21 -52.48 -0.27 2.17 16 23 C 0.04 1.24 5.49 -17.52 -0.10 1.15 16 24 N -0.83 -25.62 13.67 55.48 0.76 -24.86 16 25 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 29 H 0.06 0.32 7.75 -51.93 -0.40 -0.09 16 30 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.40 1.82 8.60 -40.82 -0.35 1.47 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 41 H 0.07 1.28 8.10 -51.93 -0.42 0.85 16 42 H 0.39 4.68 6.50 -40.82 -0.27 4.41 16 43 H 0.11 1.39 6.40 -52.49 -0.34 1.05 16 44 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 45 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 46 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 47 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -38.48 394.76 -8.35 -46.83 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.94 Total: 7.13 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.18 Total: -5.96 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.18 Total: -43.02 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.33 Total: -26.79 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.48 -8.35 -46.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194184890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.871 kcal (2) G-P(sol) polarization free energy of solvation -38.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds