Wall clock time and date at job start Tue Mar 31 2020 18:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47191 * 2 1 4 4 H 1.08999 * 109.47224 * 55.00040 * 3 2 1 5 5 C 1.52997 * 109.47148 * 174.99988 * 3 2 1 6 6 N 1.46503 * 109.47212 * 295.00381 * 3 2 1 7 7 C 1.34769 * 120.00009 * 154.99913 * 6 3 2 8 8 O 1.21274 * 120.00234 * 0.02562 * 7 6 3 9 9 C 1.50710 * 119.99719 * 179.97438 * 7 6 3 10 10 C 1.53002 * 109.46980 * 180.02562 * 9 7 6 11 11 N 1.46495 * 109.47070 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00095 * 180.27252 * 11 10 9 13 13 O 1.21594 * 119.99690 * 359.72278 * 12 11 10 14 14 C 1.47532 * 120.00024 * 179.72007 * 12 11 10 15 15 C 1.39670 * 120.19847 * 0.02562 * 14 12 11 16 16 C 1.37820 * 119.91890 * 179.97438 * 15 14 12 17 17 C 1.38573 * 120.32831 * 0.02562 * 16 15 14 18 18 C 1.38025 * 120.39895 * 0.02562 * 17 16 15 19 19 C 1.38836 * 120.07033 * 359.68101 * 18 17 16 20 20 O 1.35525 * 120.16327 * 180.29712 * 19 18 17 21 21 C 1.34813 * 116.99864 * 354.40229 * 20 19 18 22 22 H 1.08004 * 120.00166 * 5.06080 * 21 20 19 23 23 C 1.38693 * 120.00063 * 185.06551 * 21 20 19 24 24 N 1.31521 * 119.99925 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00048 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47260 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47232 * 120.00058 * 25 23 21 28 28 H 1.48498 * 109.47331 * 239.99893 * 25 23 21 29 29 H 1.08996 * 109.47255 * 60.00424 * 1 2 3 30 30 H 1.09008 * 109.47219 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47023 * 300.00078 * 1 2 3 32 32 H 1.09004 * 109.47023 * 239.99922 * 2 1 3 33 33 H 1.09005 * 109.47197 * 119.99841 * 2 1 3 34 34 H 1.09008 * 109.47176 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.47538 * 299.99803 * 5 3 2 36 36 H 1.08999 * 109.47016 * 59.99924 * 5 3 2 37 37 H 0.97001 * 119.99609 * 334.99180 * 6 3 2 38 38 H 1.08997 * 109.46592 * 60.00132 * 9 7 6 39 39 H 1.09000 * 109.47121 * 300.00031 * 9 7 6 40 40 H 1.08995 * 109.47584 * 59.99480 * 10 9 7 41 41 H 1.09000 * 109.46962 * 299.99813 * 10 9 7 42 42 H 0.97001 * 119.99820 * 359.97438 * 11 10 9 43 43 H 1.07996 * 120.03784 * 359.97438 * 15 14 12 44 44 H 1.08010 * 119.83681 * 179.97438 * 16 15 14 45 45 H 1.08004 * 119.80532 * 180.02562 * 17 16 15 46 46 H 1.07998 * 119.96677 * 179.97438 * 18 17 16 47 47 H 0.97006 * 119.99983 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5255 3.4384 -1.2995 8 8 1.7327 4.1028 -0.3064 9 6 1.1273 4.1122 -2.5874 10 6 1.0565 5.6251 -2.3707 11 7 0.6688 6.2801 -3.6224 12 6 0.5478 7.6215 -3.6717 13 8 0.7554 8.2877 -2.6759 14 6 0.1634 8.2816 -4.9339 15 6 -0.0766 7.5204 -6.0801 16 6 -0.4358 8.1429 -7.2560 17 6 -0.5601 9.5221 -7.3080 18 6 -0.3252 10.2874 -6.1836 19 6 0.0318 9.6770 -4.9888 20 8 0.2570 10.4261 -3.8821 21 6 0.2319 11.7654 -4.0342 22 1 -0.0417 12.1958 -4.9862 23 6 0.5575 12.5906 -2.9681 24 7 0.8903 12.0665 -1.8086 25 14 0.5234 14.4464 -3.1789 26 1 0.1195 14.7793 -4.5686 27 1 -0.4516 15.0350 -2.2261 28 1 1.8747 15.0001 -2.9096 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9282 2.4720 0.1253 35 1 3.8532 0.9570 1.0571 36 1 3.9994 0.9052 -0.7161 37 1 1.4871 1.5661 -2.0463 38 1 0.1513 3.7439 -2.9034 39 1 1.8662 3.8900 -3.3573 40 1 2.0326 5.9931 -2.0548 41 1 0.3178 5.8477 -1.6007 42 1 0.5035 5.7487 -4.4169 43 1 0.0194 6.4452 -6.0449 44 1 -0.6207 7.5530 -8.1417 45 1 -0.8425 10.0011 -8.2339 46 1 -0.4236 11.3618 -6.2321 47 1 1.1177 12.6437 -1.0628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194184890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:58 Heat of formation + Delta-G solvation = -114.449913 kcal Electronic energy + Delta-G solvation = -27865.887527 eV Core-core repulsion = 23819.896783 eV Total energy + Delta-G solvation = -4045.990744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34020 -40.93621 -39.77121 -38.01556 -37.56833 -36.09613 -34.32994 -33.53890 -32.65806 -31.26814 -30.55754 -30.37100 -27.40634 -25.90722 -24.67048 -23.97355 -22.93935 -21.92390 -21.63521 -21.32376 -19.84496 -19.25005 -18.24080 -17.83820 -17.21686 -16.93185 -16.80594 -16.31241 -16.03090 -15.87947 -15.66914 -15.41832 -15.26992 -15.02298 -14.79748 -14.66131 -14.32115 -14.27015 -14.20429 -14.12939 -13.54720 -13.27551 -13.02104 -12.93541 -12.67544 -12.65791 -12.55923 -12.44397 -12.30010 -12.25677 -12.09436 -11.95385 -11.62735 -11.42779 -10.99041 -10.84998 -10.61176 -10.16926 -10.07965 -9.76746 -9.02151 -8.44672 -6.16143 0.14213 0.74963 1.31162 1.42522 1.51742 1.62091 1.92720 2.10596 2.15500 2.53362 2.88272 3.23959 3.48913 3.60476 3.76775 4.00724 4.03172 4.05479 4.11062 4.13285 4.19686 4.31329 4.47765 4.51782 4.54437 4.64024 4.66397 4.75047 4.83692 4.85941 4.93187 4.99747 5.02302 5.08430 5.13709 5.16369 5.18859 5.27110 5.42372 5.48740 5.50304 5.58091 5.63330 5.72004 5.96235 6.19924 6.56767 6.72951 6.94485 7.28993 7.50632 7.81663 8.76306 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.002280 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.308870 B =12276.040193 C =13823.358462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C 0.135 3.865 4 H 0.057 0.943 5 C -0.161 4.161 6 N -0.706 5.706 7 C 0.512 3.488 8 O -0.592 6.592 9 C -0.133 4.133 10 C 0.141 3.859 11 N -0.712 5.712 12 C 0.544 3.456 13 O -0.573 6.573 14 C -0.244 4.244 15 C -0.027 4.027 16 C -0.199 4.199 17 C -0.040 4.040 18 C -0.259 4.259 19 C 0.146 3.854 20 O -0.192 6.192 21 C -0.426 4.426 22 H 0.109 0.891 23 C -0.026 4.026 24 N -0.908 5.908 25 Si 1.024 2.976 26 H -0.243 1.243 27 H -0.269 1.269 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.029 0.971 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.419 0.581 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.417 0.583 43 H 0.168 0.832 44 H 0.168 0.832 45 H 0.154 0.846 46 H 0.121 0.879 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 -27.354 -9.375 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C 0.030 3.970 4 H 0.075 0.925 5 C -0.219 4.219 6 N -0.360 5.360 7 C 0.299 3.701 8 O -0.472 6.472 9 C -0.173 4.173 10 C 0.016 3.984 11 N -0.369 5.369 12 C 0.334 3.666 13 O -0.452 6.452 14 C -0.249 4.249 15 C -0.045 4.045 16 C -0.217 4.217 17 C -0.058 4.058 18 C -0.278 4.278 19 C 0.091 3.909 20 O -0.094 6.094 21 C -0.502 4.502 22 H 0.126 0.874 23 C -0.225 4.225 24 N -0.544 5.544 25 Si 0.842 3.158 26 H -0.166 1.166 27 H -0.194 1.194 28 H -0.195 1.195 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.048 0.952 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.257 0.743 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.256 0.744 43 H 0.185 0.815 44 H 0.185 0.815 45 H 0.171 0.829 46 H 0.139 0.861 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.247 -26.447 -7.479 27.486 hybrid contribution 0.036 1.052 0.271 1.087 sum -0.210 -25.396 -7.209 26.400 Atomic orbital electron populations 1.21800 0.95514 1.02299 1.01656 1.21780 0.96221 0.93233 1.04538 1.21059 0.94996 0.94326 0.86612 0.92511 1.22152 0.95210 1.01145 1.03421 1.45912 1.69726 1.05854 1.14482 1.20862 0.76007 0.83030 0.90165 1.90770 1.52048 1.65424 1.38970 1.21745 1.07484 0.91732 0.96321 1.20756 0.99215 0.92533 0.85884 1.45471 1.72036 1.05441 1.13945 1.18649 0.76911 0.82699 0.88313 1.90955 1.50755 1.65307 1.38169 1.19294 1.18818 0.90825 0.95987 1.21352 0.93106 1.00089 0.89933 1.21209 1.07332 0.94218 0.98954 1.21453 0.92865 0.94700 0.96814 1.21293 1.11788 1.01122 0.93591 1.20158 0.91560 0.91644 0.87587 1.84192 1.76620 1.19025 1.29599 1.22092 1.48750 0.78876 1.00453 0.87429 1.26822 0.95352 1.06510 0.93823 1.70354 1.43254 1.38053 1.02756 0.84477 0.78570 0.72867 0.79839 1.16584 1.19420 1.19460 0.92368 0.91232 0.94227 0.89155 0.89584 0.95159 0.90555 0.90587 0.74302 0.84287 0.84339 0.94489 0.94394 0.74387 0.81486 0.81482 0.82857 0.86088 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.80 71.98 0.71 -0.69 16 2 C -0.12 -0.92 5.47 30.59 0.17 -0.76 16 3 C 0.13 1.96 2.57 44.99 0.12 2.08 16 4 H 0.06 1.22 7.58 -2.39 -0.02 1.20 16 5 C -0.16 -2.36 9.48 71.98 0.68 -1.68 16 6 N -0.71 -9.40 4.53 -442.54 -2.00 -11.40 16 7 C 0.51 11.34 7.79 87.66 0.68 12.02 16 8 O -0.59 -20.82 15.64 -3.01 -0.05 -20.86 16 9 C -0.13 -2.18 5.81 29.85 0.17 -2.01 16 10 C 0.14 4.46 4.96 86.38 0.43 4.89 16 11 N -0.71 -22.27 5.51 -466.28 -2.57 -24.84 16 12 C 0.54 25.47 7.76 86.69 0.67 26.14 16 13 O -0.57 -35.82 15.17 16.88 0.26 -35.56 16 14 C -0.24 -10.65 5.89 -19.99 -0.12 -10.76 16 15 C -0.03 -0.76 9.53 22.52 0.21 -0.54 16 16 C -0.20 -5.02 10.02 22.25 0.22 -4.79 16 17 C -0.04 -1.23 10.03 22.30 0.22 -1.00 16 18 C -0.26 -11.13 9.16 22.36 0.20 -10.93 16 19 C 0.15 7.63 6.66 22.91 0.15 7.79 16 20 O -0.19 -12.55 7.84 0.81 0.01 -12.55 16 21 C -0.43 -26.43 9.49 67.93 0.64 -25.79 16 22 H 0.11 5.97 5.21 -2.91 -0.02 5.95 16 23 C -0.03 -1.61 5.49 84.85 0.47 -1.15 16 24 N -0.91 -61.64 13.67 21.62 0.30 -61.34 16 25 Si 1.02 45.61 29.55 68.60 2.03 47.64 16 26 H -0.24 -9.69 7.11 99.48 0.71 -8.98 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 29 H 0.06 0.50 7.75 -2.39 -0.02 0.48 16 30 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.42 2.16 8.60 -92.71 -0.80 1.36 16 38 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.04 1.44 8.10 -2.39 -0.02 1.42 16 41 H 0.04 1.46 8.10 -2.39 -0.02 1.44 16 42 H 0.42 8.11 6.50 -92.71 -0.60 7.51 16 43 H 0.17 2.84 6.40 -2.91 -0.02 2.82 16 44 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 45 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 46 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 47 H 0.27 16.77 8.31 -92.70 -0.77 16.00 16 Total: -1.00 -103.99 394.76 3.21 -100.78 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.40 Total: 25.32 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.64 Total: -7.18 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -4.28 Total: -97.59 kcal Atomic # 8 Polarization: -69.19 SS G_CDS: 0.22 Total: -68.97 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -103.99 3.21 -100.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194184890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.673 kcal (2) G-P(sol) polarization free energy of solvation -103.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds