Wall clock time and date at job start Tue Mar 31 2020 17:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47298 * 2 1 4 4 C 1.53001 * 109.47377 * 239.99809 * 2 1 3 5 5 O 1.45203 * 109.47273 * 119.99814 * 2 1 3 6 6 C 1.34631 * 117.00296 * 59.99637 * 5 2 1 7 7 O 1.21519 * 119.99777 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00594 * 180.02562 * 6 5 2 9 9 C 1.46495 * 120.00146 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46899 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.47064 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99901 * 354.83564 * 11 10 9 13 13 N 1.34779 * 119.99924 * 174.84084 * 11 10 9 14 14 C 1.37137 * 120.00011 * 5.67638 * 13 11 10 15 15 H 1.08004 * 120.00273 * 55.66781 * 14 13 11 16 16 C 1.38888 * 120.00163 * 235.66946 * 14 13 11 17 17 N 1.31424 * 119.99674 * 9.24133 * 16 14 13 18 18 Si 1.86798 * 120.00391 * 189.24837 * 16 14 13 19 19 H 1.48493 * 109.47482 * 89.99650 * 18 16 14 20 20 H 1.48501 * 109.46927 * 210.00055 * 18 16 14 21 21 H 1.48497 * 109.46843 * 329.99479 * 18 16 14 22 22 C 1.39785 * 119.99708 * 185.67650 * 13 11 10 23 23 C 1.38961 * 120.07695 * 175.18919 * 22 13 11 24 24 C 1.38081 * 119.92115 * 179.97438 * 23 22 13 25 25 C 1.38303 * 120.08186 * 359.97438 * 24 23 22 26 26 C 1.38314 * 120.15389 * 359.97438 * 25 24 23 27 27 C 1.38088 * 120.07763 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47018 * 300.00471 * 1 2 3 29 29 H 1.08998 * 109.46879 * 60.00384 * 1 2 3 30 30 H 1.08997 * 109.46793 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47481 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46342 * 300.00222 * 3 2 1 33 33 H 1.09000 * 109.47049 * 59.99591 * 3 2 1 34 34 H 1.08997 * 109.46636 * 299.99985 * 4 2 1 35 35 H 1.08998 * 109.46809 * 59.99792 * 4 2 1 36 36 H 1.08993 * 109.47175 * 179.97438 * 4 2 1 37 37 H 0.97003 * 119.99218 * 359.97438 * 8 6 5 38 38 H 1.08998 * 109.47417 * 60.00021 * 9 8 6 39 39 H 1.08998 * 109.47316 * 299.99907 * 9 8 6 40 40 H 1.09000 * 109.47496 * 59.99949 * 10 9 8 41 41 H 1.09001 * 109.47637 * 299.99989 * 10 9 8 42 42 H 0.97001 * 120.00283 * 184.98362 * 17 16 14 43 43 H 1.07998 * 120.03859 * 359.70541 * 23 22 13 44 44 H 1.08007 * 119.95632 * 179.97438 * 24 23 22 45 45 H 1.07995 * 119.92309 * 179.97438 * 25 24 23 46 46 H 1.07995 * 119.95873 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.03890 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3385 7 8 0.9516 -2.5097 0.5037 8 7 2.0672 -2.6653 2.4173 9 6 1.6740 -4.0667 2.5833 10 6 2.2741 -4.6146 3.8797 11 6 1.8690 -6.0561 4.0509 12 8 1.0944 -6.5652 3.2689 13 7 2.3677 -6.7794 5.0730 14 6 3.1504 -6.1749 6.0231 15 1 2.7774 -5.3182 6.5649 16 6 4.4228 -6.6642 6.2885 17 7 4.9479 -7.5851 5.5117 18 14 5.3877 -6.0137 7.7497 19 1 5.0902 -6.8401 8.9470 20 1 6.8411 -6.0789 7.4518 21 1 4.9990 -4.6046 8.0118 22 6 2.0869 -8.1457 5.1646 23 6 2.6801 -8.9133 6.1596 24 6 2.4001 -10.2626 6.2475 25 6 1.5301 -10.8501 5.3471 26 6 0.9370 -10.0889 4.3562 27 6 1.2124 -8.7390 4.2623 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 2.6269 -2.2363 3.0834 38 1 2.0412 -4.6496 1.7387 39 1 0.5872 -4.1363 2.6278 40 1 1.9073 -4.0318 4.7247 41 1 3.3609 -4.5451 3.8349 42 1 5.8051 -7.9790 5.7375 43 1 3.3626 -8.4560 6.8606 44 1 2.8611 -10.8598 7.0203 45 1 1.3132 -11.9057 5.4180 46 1 0.2578 -10.5508 3.6551 47 1 0.7494 -8.1453 3.4881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194664887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:34 Heat of formation + Delta-G solvation = -75.476449 kcal Electronic energy + Delta-G solvation = -28810.728321 eV Core-core repulsion = 24766.427593 eV Total energy + Delta-G solvation = -4044.300728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.69307 -39.80088 -37.67929 -37.12166 -35.14710 -34.88767 -34.01228 -32.03710 -30.74856 -29.63128 -28.51243 -27.56160 -27.48960 -25.32893 -24.21915 -22.08650 -21.46069 -20.99979 -20.15320 -19.37016 -18.23286 -17.52178 -16.74195 -16.25646 -16.21368 -15.65388 -15.24737 -14.98077 -14.91086 -14.45506 -14.40348 -14.29344 -13.53100 -13.43956 -13.39918 -13.04603 -12.74858 -12.63518 -12.37016 -12.25108 -12.02757 -12.01833 -11.96725 -11.71294 -11.53638 -11.40715 -11.37911 -11.28556 -11.12128 -10.94963 -10.88456 -10.52653 -10.40824 -10.08218 -10.00039 -9.29528 -8.99564 -8.80751 -8.21807 -7.81973 -6.94218 -6.37420 -4.62904 2.22296 2.37996 2.54241 2.95453 2.98434 3.07334 3.09433 3.65506 3.89001 4.13551 4.53327 4.58660 4.62514 4.68732 4.77082 5.08729 5.21509 5.29976 5.38459 5.50680 5.53003 5.54608 5.62234 5.70254 5.73247 5.82363 5.85775 5.95666 6.06957 6.13792 6.16296 6.18342 6.29511 6.34359 6.53273 6.58836 6.68297 6.71312 6.88770 7.11795 7.17783 7.48430 7.54792 7.59394 7.65500 7.73466 8.00504 8.38504 8.49227 8.77130 9.15902 9.54346 10.40307 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.002753 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.198594 B =10167.200039 C =11701.201047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.368 6.368 6 C 0.648 3.352 7 O -0.568 6.568 8 N -0.708 5.708 9 C 0.151 3.849 10 C -0.130 4.130 11 C 0.499 3.501 12 O -0.564 6.564 13 N -0.381 5.381 14 C -0.372 4.372 15 H 0.094 0.906 16 C 0.057 3.943 17 N -0.839 5.839 18 Si 0.915 3.085 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.265 1.265 22 C 0.182 3.818 23 C -0.105 4.105 24 C -0.124 4.124 25 C -0.173 4.173 26 C -0.121 4.121 27 C -0.192 4.192 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.405 0.595 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.275 0.725 43 H 0.131 0.869 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 12.067 -4.648 13.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.283 6.283 6 C 0.401 3.599 7 O -0.457 6.457 8 N -0.367 5.367 9 C 0.029 3.971 10 C -0.170 4.170 11 C 0.290 3.710 12 O -0.449 6.449 13 N -0.089 5.089 14 C -0.499 4.499 15 H 0.112 0.888 16 C -0.153 4.153 17 N -0.471 5.471 18 Si 0.740 3.260 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.189 1.189 22 C 0.086 3.914 23 C -0.126 4.126 24 C -0.143 4.143 25 C -0.192 4.192 26 C -0.139 4.139 27 C -0.211 4.211 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.240 0.760 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.086 0.914 43 H 0.149 0.851 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.123 0.877 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.896 11.628 -5.572 13.216 hybrid contribution 1.147 0.226 1.169 1.653 sum -1.748 11.854 -4.404 12.766 Atomic orbital electron populations 1.22519 0.94073 1.05226 1.02272 1.22025 0.94339 0.91422 0.82302 1.21853 1.02225 0.92681 1.02963 1.22521 1.01552 1.03699 0.96359 1.86289 1.71732 1.23950 1.46318 1.18057 0.79105 0.80328 0.82442 1.90906 1.41170 1.70351 1.43269 1.44825 1.55345 1.13113 1.23409 1.21147 1.00604 0.77271 0.98116 1.21479 1.03620 0.94688 0.97180 1.20513 0.81914 0.88414 0.80147 1.90219 1.37785 1.71427 1.45479 1.40939 1.42023 1.04988 1.20907 1.19336 0.95284 1.17150 1.18115 0.88823 1.25626 0.96294 0.95937 0.97484 1.70032 1.18069 1.24770 1.34208 0.86122 0.78887 0.79931 0.81107 1.19743 1.20545 1.18880 1.18279 0.93713 0.84984 0.94460 1.21029 0.99371 0.92803 0.99411 1.20771 0.99263 0.94897 0.99374 1.20801 1.01443 0.98575 0.98369 1.20882 1.00446 0.94292 0.98329 1.22809 1.00592 0.95631 1.02065 0.92233 0.91310 0.89213 0.91505 0.90286 0.91530 0.89202 0.91314 0.92197 0.76017 0.90607 0.90473 0.88836 0.87909 0.91409 0.85108 0.87791 0.88171 0.87684 0.80772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 2 C 0.14 1.49 1.13 -90.62 -0.10 1.38 16 3 C -0.14 -1.10 8.85 37.16 0.33 -0.78 16 4 C -0.18 -2.00 8.37 37.16 0.31 -1.69 16 5 O -0.37 -4.86 9.94 -40.30 -0.40 -5.26 16 6 C 0.65 9.82 8.06 54.06 0.44 10.26 16 7 O -0.57 -9.94 11.88 -19.29 -0.23 -10.17 16 8 N -0.71 -9.88 5.56 -65.28 -0.36 -10.24 16 9 C 0.15 2.45 4.98 -4.05 -0.02 2.43 16 10 C -0.13 -2.22 4.64 -27.88 -0.13 -2.35 16 11 C 0.50 11.02 7.57 -10.98 -0.08 10.94 16 12 O -0.56 -13.28 12.37 5.56 0.07 -13.21 16 13 N -0.38 -9.11 2.62 -58.98 -0.15 -9.26 16 14 C -0.37 -8.58 7.61 -14.94 -0.11 -8.70 16 15 H 0.09 2.03 7.85 -52.48 -0.41 1.62 16 16 C 0.06 1.31 3.49 -17.49 -0.06 1.25 16 17 N -0.84 -20.92 11.39 55.49 0.63 -20.29 16 18 Si 0.91 17.71 29.57 -169.99 -5.03 12.69 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 22 C 0.18 4.48 6.05 -83.70 -0.51 3.97 16 23 C -0.11 -2.48 7.87 -39.37 -0.31 -2.79 16 24 C -0.12 -2.59 10.04 -39.61 -0.40 -2.98 16 25 C -0.17 -3.41 10.04 -39.53 -0.40 -3.80 16 26 C -0.12 -2.50 10.04 -39.61 -0.40 -2.89 16 27 C -0.19 -4.49 9.06 -39.37 -0.36 -4.84 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.20 5.88 -51.93 -0.31 0.90 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 1.22 5.88 -51.93 -0.31 0.92 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.41 4.65 8.58 -40.82 -0.35 4.30 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.08 1.33 8.04 -51.93 -0.42 0.92 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.10 1.76 8.04 -51.93 -0.42 1.35 16 42 H 0.28 6.53 8.32 -40.82 -0.34 6.19 16 43 H 0.13 3.17 5.15 -52.49 -0.27 2.90 16 44 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 45 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 46 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 47 H 0.18 4.22 4.50 -56.37 -0.25 3.97 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -28.58 380.52 -8.17 -36.74 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -6.94 Total: 15.52 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.49 Total: -2.25 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.11 Total: -39.80 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.56 Total: -28.64 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.58 -8.17 -36.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194664887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.732 kcal (2) G-P(sol) polarization free energy of solvation -28.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds