Wall clock time and date at job start Tue Mar 31 2020 17:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47298 * 2 1 4 4 C 1.53001 * 109.47377 * 239.99809 * 2 1 3 5 5 O 1.45203 * 109.47273 * 119.99814 * 2 1 3 6 6 C 1.34631 * 117.00296 * 59.99637 * 5 2 1 7 7 O 1.21519 * 119.99777 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00594 * 180.02562 * 6 5 2 9 9 C 1.46495 * 120.00146 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46899 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.47064 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99901 * 354.83564 * 11 10 9 13 13 N 1.34779 * 119.99924 * 174.84084 * 11 10 9 14 14 C 1.37137 * 120.00011 * 5.67638 * 13 11 10 15 15 H 1.08004 * 120.00273 * 55.66781 * 14 13 11 16 16 C 1.38888 * 120.00163 * 235.66946 * 14 13 11 17 17 N 1.31424 * 119.99674 * 9.24133 * 16 14 13 18 18 Si 1.86798 * 120.00391 * 189.24837 * 16 14 13 19 19 H 1.48493 * 109.47482 * 89.99650 * 18 16 14 20 20 H 1.48501 * 109.46927 * 210.00055 * 18 16 14 21 21 H 1.48497 * 109.46843 * 329.99479 * 18 16 14 22 22 C 1.39785 * 119.99708 * 185.67650 * 13 11 10 23 23 C 1.38961 * 120.07695 * 175.18919 * 22 13 11 24 24 C 1.38081 * 119.92115 * 179.97438 * 23 22 13 25 25 C 1.38303 * 120.08186 * 359.97438 * 24 23 22 26 26 C 1.38314 * 120.15389 * 359.97438 * 25 24 23 27 27 C 1.38088 * 120.07763 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47018 * 300.00471 * 1 2 3 29 29 H 1.08998 * 109.46879 * 60.00384 * 1 2 3 30 30 H 1.08997 * 109.46793 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47481 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46342 * 300.00222 * 3 2 1 33 33 H 1.09000 * 109.47049 * 59.99591 * 3 2 1 34 34 H 1.08997 * 109.46636 * 299.99985 * 4 2 1 35 35 H 1.08998 * 109.46809 * 59.99792 * 4 2 1 36 36 H 1.08993 * 109.47175 * 179.97438 * 4 2 1 37 37 H 0.97003 * 119.99218 * 359.97438 * 8 6 5 38 38 H 1.08998 * 109.47417 * 60.00021 * 9 8 6 39 39 H 1.08998 * 109.47316 * 299.99907 * 9 8 6 40 40 H 1.09000 * 109.47496 * 59.99949 * 10 9 8 41 41 H 1.09001 * 109.47637 * 299.99989 * 10 9 8 42 42 H 0.97001 * 120.00283 * 184.98362 * 17 16 14 43 43 H 1.07998 * 120.03859 * 359.70541 * 23 22 13 44 44 H 1.08007 * 119.95632 * 179.97438 * 24 23 22 45 45 H 1.07995 * 119.92309 * 179.97438 * 25 24 23 46 46 H 1.07995 * 119.95873 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.03890 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3385 7 8 0.9516 -2.5097 0.5037 8 7 2.0672 -2.6653 2.4173 9 6 1.6740 -4.0667 2.5833 10 6 2.2741 -4.6146 3.8797 11 6 1.8690 -6.0561 4.0509 12 8 1.0944 -6.5652 3.2689 13 7 2.3677 -6.7794 5.0730 14 6 3.1504 -6.1749 6.0231 15 1 2.7774 -5.3182 6.5649 16 6 4.4228 -6.6642 6.2885 17 7 4.9479 -7.5851 5.5117 18 14 5.3877 -6.0137 7.7497 19 1 5.0902 -6.8401 8.9470 20 1 6.8411 -6.0789 7.4518 21 1 4.9990 -4.6046 8.0118 22 6 2.0869 -8.1457 5.1646 23 6 2.6801 -8.9133 6.1596 24 6 2.4001 -10.2626 6.2475 25 6 1.5301 -10.8501 5.3471 26 6 0.9370 -10.0889 4.3562 27 6 1.2124 -8.7390 4.2623 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 2.6269 -2.2363 3.0834 38 1 2.0412 -4.6496 1.7387 39 1 0.5872 -4.1363 2.6278 40 1 1.9073 -4.0318 4.7247 41 1 3.3609 -4.5451 3.8349 42 1 5.8051 -7.9790 5.7375 43 1 3.3626 -8.4560 6.8606 44 1 2.8611 -10.8598 7.0203 45 1 1.3132 -11.9057 5.4180 46 1 0.2578 -10.5508 3.6551 47 1 0.7494 -8.1453 3.4881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194664887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:33 Heat of formation + Delta-G solvation = -91.881915 kcal Electronic energy + Delta-G solvation = -28811.439715 eV Core-core repulsion = 24766.427593 eV Total energy + Delta-G solvation = -4045.012122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.83615 -41.48105 -39.15102 -38.42136 -36.84921 -36.23052 -34.96677 -33.81166 -32.18786 -31.31948 -30.12686 -28.34317 -28.26545 -27.08972 -25.62916 -23.48621 -22.99167 -22.54144 -21.42525 -20.87246 -19.61632 -18.97453 -18.14782 -17.52077 -17.47384 -17.29274 -16.85074 -16.45672 -16.25760 -15.79479 -15.53418 -15.44349 -15.11147 -14.86072 -14.73624 -14.48045 -14.32354 -13.90801 -13.65821 -13.36952 -13.30165 -13.12526 -13.03569 -12.90120 -12.84222 -12.82390 -12.69915 -12.61748 -12.47751 -12.30494 -12.27184 -12.07059 -11.72266 -11.37578 -11.13402 -11.02050 -10.54525 -10.25825 -9.95249 -9.52667 -8.69953 -8.12084 -6.43614 0.68967 0.82343 1.10780 1.45235 1.49626 1.59686 1.75281 1.97968 2.27269 2.75556 2.94634 3.24944 3.36692 3.77944 3.81625 3.82334 3.97323 4.10893 4.14166 4.32866 4.38895 4.52992 4.58487 4.63435 4.63791 4.73674 4.78829 4.85532 4.90532 4.91001 4.93529 4.97443 5.02706 5.11868 5.20233 5.24871 5.30951 5.38112 5.39991 5.44057 5.58008 5.81049 5.90165 5.90809 6.05612 6.25968 6.40903 6.63472 7.01196 7.34163 7.41634 7.80432 8.66535 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.002753 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.198594 B =10167.200039 C =11701.201047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 C -0.134 4.134 4 C -0.181 4.181 5 O -0.366 6.366 6 C 0.646 3.354 7 O -0.595 6.595 8 N -0.698 5.698 9 C 0.169 3.831 10 C -0.112 4.112 11 C 0.483 3.517 12 O -0.587 6.587 13 N -0.395 5.395 14 C -0.380 4.380 15 H 0.106 0.894 16 C 0.023 3.977 17 N -0.877 5.877 18 Si 0.979 3.021 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.248 1.248 22 C 0.151 3.849 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.166 4.166 26 C -0.121 4.121 27 C -0.217 4.217 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.419 0.581 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.274 0.726 43 H 0.118 0.882 44 H 0.132 0.868 45 H 0.141 0.859 46 H 0.134 0.866 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.108 13.227 -3.929 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 C -0.191 4.191 4 C -0.239 4.239 5 O -0.281 6.281 6 C 0.399 3.601 7 O -0.486 6.486 8 N -0.358 5.358 9 C 0.045 3.955 10 C -0.152 4.152 11 C 0.275 3.725 12 O -0.473 6.473 13 N -0.103 5.103 14 C -0.507 4.507 15 H 0.124 0.876 16 C -0.183 4.183 17 N -0.510 5.510 18 Si 0.802 3.198 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.172 1.172 22 C 0.054 3.946 23 C -0.147 4.147 24 C -0.144 4.144 25 C -0.185 4.185 26 C -0.140 4.140 27 C -0.237 4.237 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.257 0.743 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.124 0.876 42 H 0.083 0.917 43 H 0.136 0.864 44 H 0.150 0.850 45 H 0.158 0.842 46 H 0.151 0.849 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.595 12.828 -4.840 13.954 hybrid contribution 0.987 -0.187 0.879 1.335 sum -1.608 12.641 -3.961 13.344 Atomic orbital electron populations 1.22479 0.93998 1.03534 1.03743 1.22469 0.94672 0.92868 0.81397 1.21879 1.02442 0.90284 1.04461 1.22486 1.01647 1.02113 0.97615 1.86310 1.71581 1.22629 1.47542 1.18185 0.78752 0.80964 0.82159 1.90907 1.42324 1.71115 1.44234 1.44585 1.55366 1.12159 1.23692 1.20753 0.99598 0.78267 0.96858 1.21354 1.03619 0.91900 0.98331 1.21296 0.81448 0.90135 0.79573 1.90203 1.38682 1.72356 1.46080 1.41216 1.42351 1.05155 1.21559 1.19701 0.95436 1.17425 1.18149 0.87625 1.26354 0.96820 0.95681 0.99475 1.70154 1.18428 1.26379 1.36031 0.85136 0.76930 0.80047 0.77727 1.19860 1.21095 1.17151 1.18661 0.94692 0.85794 0.95403 1.21072 0.99960 0.94153 0.99516 1.21153 0.99036 0.94099 1.00108 1.21215 0.99921 1.00378 0.96937 1.21247 1.00438 0.93317 0.98974 1.22850 1.01473 0.97120 1.02259 0.91755 0.88858 0.92386 0.91188 0.87787 0.91024 0.92430 0.88821 0.91965 0.74339 0.92815 0.91682 0.86391 0.87642 0.91656 0.86414 0.85006 0.84154 0.84855 0.82134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.68 8.37 71.98 0.60 -3.08 16 2 C 0.12 2.51 1.13 -10.79 -0.01 2.50 16 3 C -0.13 -1.75 8.85 71.98 0.64 -1.11 16 4 C -0.18 -3.81 8.37 71.98 0.60 -3.20 16 5 O -0.37 -9.41 9.94 -55.40 -0.55 -9.96 16 6 C 0.65 19.76 8.06 129.79 1.05 20.81 16 7 O -0.59 -21.58 11.88 19.78 0.24 -21.35 16 8 N -0.70 -19.41 5.56 -590.87 -3.29 -22.69 16 9 C 0.17 5.63 4.98 86.38 0.43 6.06 16 10 C -0.11 -3.87 4.64 29.85 0.14 -3.73 16 11 C 0.48 22.02 7.57 87.66 0.66 22.68 16 12 O -0.59 -28.93 12.37 -3.03 -0.04 -28.97 16 13 N -0.40 -19.36 2.62 -458.89 -1.20 -20.56 16 14 C -0.38 -17.65 7.61 84.02 0.64 -17.01 16 15 H 0.11 4.50 7.85 -2.91 -0.02 4.48 16 16 C 0.02 1.07 3.49 84.91 0.30 1.37 16 17 N -0.88 -44.49 11.39 21.65 0.25 -44.24 16 18 Si 0.98 35.89 29.57 68.60 2.03 37.92 16 19 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 20 H -0.29 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 22 C 0.15 7.60 6.05 38.22 0.23 7.83 16 23 C -0.13 -6.00 7.87 22.41 0.18 -5.82 16 24 C -0.13 -5.05 10.04 22.25 0.22 -4.83 16 25 C -0.17 -6.15 10.04 22.30 0.22 -5.93 16 26 C -0.12 -4.89 10.04 22.25 0.22 -4.67 16 27 C -0.22 -10.42 9.06 22.41 0.20 -10.21 16 28 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.58 5.88 -2.39 -0.01 1.57 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 1.61 5.88 -2.39 -0.01 1.59 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.42 9.19 8.58 -92.71 -0.80 8.39 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 40 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.11 3.61 8.04 -2.39 -0.02 3.59 16 42 H 0.27 13.22 8.32 -92.71 -0.77 12.45 16 43 H 0.12 5.81 5.15 -2.91 -0.02 5.79 16 44 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 45 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 46 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 47 H 0.16 8.13 4.50 -64.42 -0.29 7.84 16 Total: -1.00 -64.47 380.52 3.67 -60.79 By element: Atomic # 1 Polarization: 47.50 SS G_CDS: -0.09 Total: 47.41 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 6.33 Total: 1.65 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -4.24 Total: -87.50 kcal Atomic # 8 Polarization: -59.92 SS G_CDS: -0.35 Total: -60.28 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Total: -64.47 3.67 -60.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194664887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.088 kcal (2) G-P(sol) polarization free energy of solvation -64.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds