Wall clock time and date at job start Tue Mar 31 2020 18:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47026 * 2 1 4 4 H 1.08999 * 109.47218 * 55.00665 * 3 2 1 5 5 C 1.52994 * 109.47085 * 175.00369 * 3 2 1 6 6 N 1.46502 * 109.47441 * 295.00498 * 3 2 1 7 7 C 1.34768 * 120.00356 * 154.99958 * 6 3 2 8 8 O 1.21287 * 120.00205 * 0.02562 * 7 6 3 9 9 C 1.50699 * 120.00296 * 179.97438 * 7 6 3 10 10 H 1.08998 * 109.47291 * 59.99725 * 9 7 6 11 11 C 1.53008 * 109.47068 * 300.00091 * 9 7 6 12 12 N 1.46496 * 109.47396 * 180.02562 * 9 7 6 13 13 C 1.34774 * 120.00244 * 205.00054 * 12 9 7 14 14 O 1.21600 * 119.99694 * 359.97438 * 13 12 9 15 15 C 1.47535 * 120.00237 * 179.97438 * 13 12 9 16 16 C 1.39666 * 120.19977 * 359.97438 * 15 13 12 17 17 C 1.37826 * 119.92252 * 180.02562 * 16 15 13 18 18 C 1.38571 * 120.32201 * 359.97438 * 17 16 15 19 19 C 1.38025 * 120.40291 * 0.02562 * 18 17 16 20 20 C 1.38830 * 120.07198 * 359.97438 * 19 18 17 21 21 O 1.35518 * 120.16236 * 180.02562 * 20 19 18 22 22 C 1.34817 * 117.00226 * 354.39159 * 21 20 19 23 23 H 1.08011 * 119.99389 * 5.05753 * 22 21 20 24 24 C 1.38693 * 120.00626 * 185.05513 * 22 21 20 25 25 N 1.31518 * 120.00332 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99744 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.46914 * 89.99836 * 26 24 22 28 28 H 1.48496 * 109.47199 * 209.99917 * 26 24 22 29 29 H 1.48498 * 109.46974 * 330.00017 * 26 24 22 30 30 H 1.09000 * 109.47686 * 59.99637 * 1 2 3 31 31 H 1.09000 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46603 * 299.99764 * 1 2 3 33 33 H 1.09004 * 109.46603 * 240.00236 * 2 1 3 34 34 H 1.08990 * 109.46946 * 120.00276 * 2 1 3 35 35 H 1.09000 * 109.47546 * 60.00329 * 5 3 2 36 36 H 1.09000 * 109.47239 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.47400 * 299.99935 * 5 3 2 38 38 H 0.97006 * 119.99919 * 334.99836 * 6 3 2 39 39 H 1.08992 * 109.46963 * 179.97438 * 11 9 7 40 40 H 1.08998 * 109.46766 * 299.99955 * 11 9 7 41 41 H 1.08996 * 109.47033 * 60.00084 * 11 9 7 42 42 H 0.97004 * 120.00291 * 24.99984 * 12 9 7 43 43 H 1.08003 * 120.03718 * 359.97438 * 16 15 13 44 44 H 1.08001 * 119.83467 * 180.02562 * 17 16 15 45 45 H 1.07999 * 119.79485 * 180.27518 * 18 17 16 46 46 H 1.08003 * 119.96584 * 180.02562 * 19 18 17 47 47 H 0.96997 * 120.00010 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5648 1.4443 0.1256 6 7 1.6524 2.0976 -1.2517 7 6 1.5255 3.4384 -1.2995 8 8 1.7328 4.1030 -0.3063 9 6 1.1273 4.1123 -2.5872 10 1 0.1514 3.7441 -2.9034 11 6 2.1646 3.8005 -3.6680 12 7 1.0595 5.5609 -2.3797 13 6 0.2739 6.3189 -3.1702 14 8 -0.3782 5.8004 -4.0559 15 6 0.2052 7.7777 -2.9608 16 6 0.9520 8.3775 -1.9444 17 6 0.8831 9.7408 -1.7536 18 6 0.0761 10.5210 -2.5661 19 6 -0.6676 9.9422 -3.5745 20 6 -0.6107 8.5706 -3.7814 21 8 -1.3397 8.0004 -4.7713 22 6 -2.1890 8.8017 -5.4454 23 1 -2.2059 9.8625 -5.2429 24 6 -3.0407 8.2639 -6.3987 25 7 -3.8695 9.0456 -7.0559 26 14 -3.0118 6.4291 -6.7484 27 1 -3.9783 5.7399 -5.8561 28 1 -3.3878 6.1891 -8.1648 29 1 -1.6464 5.8998 -6.5021 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.9994 0.9054 -0.7162 36 1 3.9281 2.4720 0.1261 37 1 3.8533 0.9570 1.0569 38 1 1.4870 1.5662 -2.0463 39 1 1.8763 4.2875 -4.5995 40 1 3.1405 4.1687 -3.3519 41 1 2.2154 2.7227 -3.8225 42 1 1.5800 5.9747 -1.6734 43 1 1.5822 7.7737 -1.3082 44 1 1.4615 10.2032 -0.9675 45 1 0.0319 11.5890 -2.4119 46 1 -1.2940 10.5571 -4.2039 47 1 -4.4650 8.6695 -7.7229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194752793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:10 Heat of formation + Delta-G solvation = -81.695802 kcal Electronic energy + Delta-G solvation = -28953.742644 eV Core-core repulsion = 24909.172225 eV Total energy + Delta-G solvation = -4044.570419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.50505 -39.59877 -38.24803 -36.77262 -36.49755 -34.66453 -32.82074 -32.44061 -31.34602 -30.19144 -29.32970 -29.15853 -25.37948 -24.96955 -24.09575 -23.06374 -21.57699 -21.08971 -20.52792 -20.00260 -18.35945 -17.88360 -16.93312 -16.86113 -16.14788 -15.61967 -15.41820 -14.79786 -14.55546 -14.40982 -14.28430 -14.09411 -13.98819 -13.86110 -13.71241 -13.66299 -13.50465 -12.94919 -12.73898 -12.47304 -12.33977 -12.32466 -12.15530 -12.15363 -11.72490 -11.65580 -11.47367 -11.36394 -11.24832 -11.08849 -10.80369 -10.71715 -10.05588 -9.95757 -9.62323 -9.38418 -9.09106 -8.88645 -8.83027 -8.35716 -7.45922 -6.46139 -4.11111 1.59175 2.22236 2.41135 2.74723 3.30999 3.37417 3.54433 3.59212 3.65232 4.27022 4.35357 4.48613 4.53274 4.62173 4.67709 4.75749 5.00283 5.04023 5.09095 5.12388 5.18217 5.23263 5.31286 5.37340 5.42096 5.50460 5.52485 5.56077 5.65830 5.71542 5.75972 5.83418 5.91297 5.98113 6.06931 6.09466 6.21829 6.40983 6.56978 6.67853 6.86483 7.03665 7.17397 7.21343 7.50484 7.69240 7.92392 7.96109 7.98397 8.82730 8.89871 9.52837 10.59160 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.003216 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.649997 B = 8705.193825 C =10338.659320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.131 4.131 3 C 0.139 3.861 4 H 0.089 0.911 5 C -0.164 4.164 6 N -0.722 5.722 7 C 0.516 3.484 8 O -0.534 6.534 9 C 0.128 3.872 10 H 0.113 0.887 11 C -0.158 4.158 12 N -0.724 5.724 13 C 0.566 3.434 14 O -0.520 6.520 15 C -0.226 4.226 16 C -0.038 4.038 17 C -0.220 4.220 18 C -0.050 4.050 19 C -0.228 4.228 20 C 0.203 3.797 21 O -0.166 6.166 22 C -0.396 4.396 23 H 0.108 0.892 24 C 0.071 3.929 25 N -0.871 5.871 26 Si 0.901 3.099 27 H -0.275 1.275 28 H -0.287 1.287 29 H -0.238 1.238 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.401 0.599 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.404 0.596 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.138 0.862 47 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.417 -15.285 12.567 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.169 4.169 3 C 0.035 3.965 4 H 0.107 0.893 5 C -0.222 4.222 6 N -0.375 5.375 7 C 0.301 3.699 8 O -0.410 6.410 9 C 0.019 3.981 10 H 0.130 0.870 11 C -0.217 4.217 12 N -0.381 5.381 13 C 0.356 3.644 14 O -0.396 6.396 15 C -0.231 4.231 16 C -0.057 4.057 17 C -0.239 4.239 18 C -0.068 4.068 19 C -0.247 4.247 20 C 0.145 3.855 21 O -0.066 6.066 22 C -0.471 4.471 23 H 0.125 0.875 24 C -0.134 4.134 25 N -0.507 5.507 26 Si 0.726 3.274 27 H -0.200 1.200 28 H -0.213 1.213 29 H -0.161 1.161 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.236 0.764 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.241 0.759 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.156 0.844 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.867 -15.405 12.350 23.567 hybrid contribution 0.007 -0.569 -0.219 0.609 sum 12.873 -15.974 12.132 23.834 Atomic orbital electron populations 1.21795 0.95150 1.01815 1.02510 1.21838 0.96709 0.95265 1.03059 1.21027 0.94961 0.93072 0.87433 0.89305 1.22179 0.95292 1.02763 1.01967 1.46033 1.70923 1.06773 1.13804 1.20776 0.76326 0.82473 0.90293 1.90689 1.49834 1.64018 1.36481 1.20621 1.01993 0.83258 0.92194 0.86950 1.22145 0.98464 1.01734 0.99360 1.45667 1.49403 1.05241 1.37801 1.18194 0.78413 0.86722 0.81041 1.90847 1.43073 1.73842 1.31793 1.18775 1.09191 0.91618 1.03467 1.20826 0.95549 0.94909 0.94402 1.20555 1.05808 0.93667 1.03903 1.20975 0.93612 0.98940 0.93307 1.21279 1.05999 0.94537 1.02877 1.19005 0.89492 0.90706 0.86297 1.83773 1.46332 1.37750 1.38789 1.20928 1.14954 0.92649 1.18559 0.87462 1.24493 0.93769 1.00566 0.94601 1.69639 1.20929 1.36458 1.23631 0.86190 0.81580 0.83082 0.76582 1.20001 1.21312 1.16099 0.92390 0.92479 0.92497 0.91337 0.90375 0.92432 0.91935 0.91668 0.76388 0.90275 0.91958 0.91613 0.75862 0.86631 0.86944 0.86810 0.84400 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.80 37.16 0.36 -0.63 16 2 C -0.13 -0.71 5.47 -26.73 -0.15 -0.86 16 3 C 0.14 1.06 2.57 -67.93 -0.17 0.89 16 4 H 0.09 0.86 7.58 -51.93 -0.39 0.46 16 5 C -0.16 -1.15 9.48 37.15 0.35 -0.80 16 6 N -0.72 -6.06 4.42 -53.81 -0.24 -6.29 16 7 C 0.52 6.16 7.19 -10.99 -0.08 6.08 16 8 O -0.53 -8.00 15.50 5.55 0.09 -7.91 16 9 C 0.13 1.69 2.99 -69.08 -0.21 1.48 16 10 H 0.11 1.58 7.58 -51.93 -0.39 1.18 16 11 C -0.16 -1.75 9.38 37.16 0.35 -1.40 16 12 N -0.72 -11.51 4.90 -55.97 -0.27 -11.78 16 13 C 0.57 11.56 7.73 -12.47 -0.10 11.46 16 14 O -0.52 -12.56 14.83 -16.58 -0.25 -12.80 16 15 C -0.23 -4.70 5.89 -104.81 -0.62 -5.31 16 16 C -0.04 -0.65 9.53 -39.20 -0.37 -1.02 16 17 C -0.22 -3.57 10.02 -39.61 -0.40 -3.97 16 18 C -0.05 -0.87 10.03 -39.54 -0.40 -1.27 16 19 C -0.23 -4.87 9.16 -39.44 -0.36 -5.23 16 20 C 0.20 4.83 6.66 -38.60 -0.26 4.57 16 21 O -0.17 -4.57 6.67 -21.06 -0.14 -4.71 16 22 C -0.40 -11.33 9.95 30.90 0.31 -11.03 16 23 H 0.11 3.06 5.44 -52.48 -0.29 2.78 16 24 C 0.07 2.04 5.49 -17.52 -0.10 1.94 16 25 N -0.87 -25.34 13.96 55.48 0.77 -24.56 16 26 Si 0.90 23.00 28.62 -169.99 -4.86 18.14 16 27 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.24 -6.35 7.11 56.52 0.40 -5.94 16 30 H 0.06 0.41 7.75 -51.93 -0.40 0.01 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.40 2.47 8.02 -40.82 -0.33 2.14 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.52 7.56 -51.93 -0.39 0.12 16 42 H 0.40 5.91 5.82 -40.82 -0.24 5.67 16 43 H 0.12 1.61 6.40 -52.48 -0.34 1.27 16 44 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.14 3.04 5.64 -52.48 -0.30 2.75 16 47 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 391.06 15.07 5.89 5.89 Total: -1.00 -34.02 391.06 -7.69 -41.71 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.85 Total: 7.40 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.83 Total: -5.08 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.26 Total: -42.64 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.30 Total: -25.42 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.86 Total: 18.14 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.02 -7.69 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194752793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.989 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds