Wall clock time and date at job start Tue Mar 31 2020 18:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47026 * 2 1 4 4 H 1.08999 * 109.47218 * 55.00665 * 3 2 1 5 5 C 1.52994 * 109.47085 * 175.00369 * 3 2 1 6 6 N 1.46502 * 109.47441 * 295.00498 * 3 2 1 7 7 C 1.34768 * 120.00356 * 154.99958 * 6 3 2 8 8 O 1.21287 * 120.00205 * 0.02562 * 7 6 3 9 9 C 1.50699 * 120.00296 * 179.97438 * 7 6 3 10 10 H 1.08998 * 109.47291 * 59.99725 * 9 7 6 11 11 C 1.53008 * 109.47068 * 300.00091 * 9 7 6 12 12 N 1.46496 * 109.47396 * 180.02562 * 9 7 6 13 13 C 1.34774 * 120.00244 * 205.00054 * 12 9 7 14 14 O 1.21600 * 119.99694 * 359.97438 * 13 12 9 15 15 C 1.47535 * 120.00237 * 179.97438 * 13 12 9 16 16 C 1.39666 * 120.19977 * 359.97438 * 15 13 12 17 17 C 1.37826 * 119.92252 * 180.02562 * 16 15 13 18 18 C 1.38571 * 120.32201 * 359.97438 * 17 16 15 19 19 C 1.38025 * 120.40291 * 0.02562 * 18 17 16 20 20 C 1.38830 * 120.07198 * 359.97438 * 19 18 17 21 21 O 1.35518 * 120.16236 * 180.02562 * 20 19 18 22 22 C 1.34817 * 117.00226 * 354.39159 * 21 20 19 23 23 H 1.08011 * 119.99389 * 5.05753 * 22 21 20 24 24 C 1.38693 * 120.00626 * 185.05513 * 22 21 20 25 25 N 1.31518 * 120.00332 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99744 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.46914 * 89.99836 * 26 24 22 28 28 H 1.48496 * 109.47199 * 209.99917 * 26 24 22 29 29 H 1.48498 * 109.46974 * 330.00017 * 26 24 22 30 30 H 1.09000 * 109.47686 * 59.99637 * 1 2 3 31 31 H 1.09000 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46603 * 299.99764 * 1 2 3 33 33 H 1.09004 * 109.46603 * 240.00236 * 2 1 3 34 34 H 1.08990 * 109.46946 * 120.00276 * 2 1 3 35 35 H 1.09000 * 109.47546 * 60.00329 * 5 3 2 36 36 H 1.09000 * 109.47239 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.47400 * 299.99935 * 5 3 2 38 38 H 0.97006 * 119.99919 * 334.99836 * 6 3 2 39 39 H 1.08992 * 109.46963 * 179.97438 * 11 9 7 40 40 H 1.08998 * 109.46766 * 299.99955 * 11 9 7 41 41 H 1.08996 * 109.47033 * 60.00084 * 11 9 7 42 42 H 0.97004 * 120.00291 * 24.99984 * 12 9 7 43 43 H 1.08003 * 120.03718 * 359.97438 * 16 15 13 44 44 H 1.08001 * 119.83467 * 180.02562 * 17 16 15 45 45 H 1.07999 * 119.79485 * 180.27518 * 18 17 16 46 46 H 1.08003 * 119.96584 * 180.02562 * 19 18 17 47 47 H 0.96997 * 120.00010 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5648 1.4443 0.1256 6 7 1.6524 2.0976 -1.2517 7 6 1.5255 3.4384 -1.2995 8 8 1.7328 4.1030 -0.3063 9 6 1.1273 4.1123 -2.5872 10 1 0.1514 3.7441 -2.9034 11 6 2.1646 3.8005 -3.6680 12 7 1.0595 5.5609 -2.3797 13 6 0.2739 6.3189 -3.1702 14 8 -0.3782 5.8004 -4.0559 15 6 0.2052 7.7777 -2.9608 16 6 0.9520 8.3775 -1.9444 17 6 0.8831 9.7408 -1.7536 18 6 0.0761 10.5210 -2.5661 19 6 -0.6676 9.9422 -3.5745 20 6 -0.6107 8.5706 -3.7814 21 8 -1.3397 8.0004 -4.7713 22 6 -2.1890 8.8017 -5.4454 23 1 -2.2059 9.8625 -5.2429 24 6 -3.0407 8.2639 -6.3987 25 7 -3.8695 9.0456 -7.0559 26 14 -3.0118 6.4291 -6.7484 27 1 -3.9783 5.7399 -5.8561 28 1 -3.3878 6.1891 -8.1648 29 1 -1.6464 5.8998 -6.5021 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.9994 0.9054 -0.7162 36 1 3.9281 2.4720 0.1261 37 1 3.8533 0.9570 1.0569 38 1 1.4870 1.5662 -2.0463 39 1 1.8763 4.2875 -4.5995 40 1 3.1405 4.1687 -3.3519 41 1 2.2154 2.7227 -3.8225 42 1 1.5800 5.9747 -1.6734 43 1 1.5822 7.7737 -1.3082 44 1 1.4615 10.2032 -0.9675 45 1 0.0319 11.5890 -2.4119 46 1 -1.2940 10.5571 -4.2039 47 1 -4.4650 8.6695 -7.7229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194752793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:09 Heat of formation + Delta-G solvation = -104.713305 kcal Electronic energy + Delta-G solvation = -28954.740758 eV Core-core repulsion = 24909.172225 eV Total energy + Delta-G solvation = -4045.568533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70533 -41.03619 -39.79662 -38.17790 -37.56799 -35.97178 -34.51384 -33.73534 -32.59518 -31.08357 -30.80973 -30.31956 -27.31244 -26.03600 -24.95018 -24.27017 -23.03861 -22.03251 -21.59830 -21.32739 -19.86514 -19.73543 -18.43061 -17.85613 -17.43966 -16.87409 -16.50347 -16.34410 -16.10459 -15.83922 -15.66887 -15.47790 -15.31548 -14.90875 -14.77953 -14.66310 -14.46502 -14.32071 -14.20857 -14.03587 -13.72268 -13.39220 -13.20388 -13.11368 -12.86079 -12.70769 -12.64409 -12.57324 -12.39522 -12.26968 -12.00430 -11.97261 -11.63090 -11.53780 -10.99977 -10.96272 -10.76613 -10.25757 -10.14958 -9.87237 -9.16518 -8.56831 -6.26161 0.02595 0.63267 1.26271 1.31918 1.44707 1.59551 1.75292 1.99590 2.30995 2.39208 2.76104 2.99844 3.15511 3.52052 3.78479 3.86521 4.00247 4.01451 4.05938 4.11441 4.18476 4.24984 4.46792 4.49321 4.52841 4.61660 4.63882 4.74870 4.75236 4.80934 4.85661 4.99183 5.04330 5.10365 5.13802 5.17105 5.27772 5.30097 5.36922 5.40394 5.47003 5.51921 5.60222 5.68555 5.83099 6.13914 6.41397 6.53633 6.79601 7.08925 7.30535 7.57985 8.53539 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.003216 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.649997 B = 8705.193825 C =10338.659320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.122 4.122 3 C 0.137 3.863 4 H 0.067 0.933 5 C -0.159 4.159 6 N -0.704 5.704 7 C 0.522 3.478 8 O -0.566 6.566 9 C 0.122 3.878 10 H 0.101 0.899 11 C -0.151 4.151 12 N -0.707 5.707 13 C 0.562 3.438 14 O -0.564 6.564 15 C -0.234 4.234 16 C -0.032 4.032 17 C -0.190 4.190 18 C -0.040 4.040 19 C -0.249 4.249 20 C 0.165 3.835 21 O -0.206 6.206 22 C -0.404 4.404 23 H 0.091 0.909 24 C 0.025 3.975 25 N -0.912 5.912 26 Si 0.958 3.042 27 H -0.277 1.277 28 H -0.266 1.266 29 H -0.261 1.261 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.079 0.921 38 H 0.415 0.585 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.412 0.588 43 H 0.155 0.845 44 H 0.164 0.836 45 H 0.153 0.847 46 H 0.118 0.882 47 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.439 -16.842 15.325 28.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.160 4.160 3 C 0.033 3.967 4 H 0.085 0.915 5 C -0.217 4.217 6 N -0.357 5.357 7 C 0.308 3.692 8 O -0.445 6.445 9 C 0.013 3.987 10 H 0.119 0.881 11 C -0.209 4.209 12 N -0.363 5.363 13 C 0.352 3.648 14 O -0.443 6.443 15 C -0.238 4.238 16 C -0.051 4.051 17 C -0.208 4.208 18 C -0.058 4.058 19 C -0.269 4.269 20 C 0.112 3.888 21 O -0.110 6.110 22 C -0.480 4.480 23 H 0.109 0.891 24 C -0.176 4.176 25 N -0.552 5.552 26 Si 0.781 3.219 27 H -0.202 1.202 28 H -0.190 1.190 29 H -0.185 1.185 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.252 0.748 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.251 0.749 43 H 0.172 0.828 44 H 0.182 0.818 45 H 0.171 0.829 46 H 0.136 0.864 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.947 -17.000 15.156 27.803 hybrid contribution -0.625 -0.035 -0.672 0.918 sum 15.322 -17.036 14.483 27.106 Atomic orbital electron populations 1.21815 0.96016 1.02213 1.01469 1.21806 0.95790 0.93725 1.04657 1.21145 0.95580 0.93979 0.85960 0.91525 1.22133 0.94380 1.01726 1.03448 1.45942 1.69286 1.05592 1.14893 1.20446 0.76263 0.83456 0.89073 1.90675 1.51728 1.64948 1.37160 1.20833 1.02365 0.81597 0.93863 0.88092 1.22090 0.97846 1.03963 0.97010 1.45495 1.47748 1.06426 1.36619 1.18280 0.78486 0.87019 0.81005 1.90830 1.45085 1.74581 1.33834 1.19199 1.08787 0.92113 1.03728 1.21305 0.94613 0.96023 0.93137 1.21207 1.03477 0.93036 1.03116 1.21443 0.91848 1.01161 0.91344 1.21344 1.07350 0.93664 1.04511 1.19688 0.90040 0.92333 0.86740 1.83757 1.48256 1.37802 1.41191 1.20903 1.15708 0.92312 1.19067 0.89137 1.25080 0.93963 1.03566 0.94957 1.69687 1.22617 1.37565 1.25327 0.85379 0.79870 0.79334 0.77291 1.20246 1.19049 1.18542 0.93315 0.91395 0.93693 0.89571 0.88892 0.90991 0.94157 0.90195 0.74811 0.93067 0.90980 0.87969 0.74874 0.82774 0.81817 0.82939 0.86410 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.80 71.98 0.71 -1.01 16 2 C -0.12 -0.97 5.47 30.60 0.17 -0.80 16 3 C 0.14 1.79 2.57 44.99 0.12 1.90 16 4 H 0.07 1.21 7.58 -2.39 -0.02 1.19 16 5 C -0.16 -1.80 9.48 71.98 0.68 -1.12 16 6 N -0.70 -10.30 4.42 -442.55 -1.96 -12.26 16 7 C 0.52 11.67 7.19 87.66 0.63 12.30 16 8 O -0.57 -16.14 15.50 -3.05 -0.05 -16.19 16 9 C 0.12 3.09 2.99 44.25 0.13 3.22 16 10 H 0.10 2.85 7.58 -2.39 -0.02 2.83 16 11 C -0.15 -3.10 9.38 71.98 0.68 -2.43 16 12 N -0.71 -21.82 4.90 -449.26 -2.20 -24.02 16 13 C 0.56 23.20 7.73 86.70 0.67 23.87 16 14 O -0.56 -28.40 14.83 16.87 0.25 -28.15 16 15 C -0.23 -9.63 5.89 -19.99 -0.12 -9.75 16 16 C -0.03 -0.98 9.53 22.52 0.21 -0.77 16 17 C -0.19 -5.17 10.02 22.25 0.22 -4.95 16 18 C -0.04 -1.27 10.03 22.30 0.22 -1.05 16 19 C -0.25 -10.83 9.16 22.36 0.20 -10.63 16 20 C 0.17 8.15 6.66 22.91 0.15 8.30 16 21 O -0.21 -12.02 6.67 0.83 0.01 -12.02 16 22 C -0.40 -24.72 9.95 67.93 0.68 -24.05 16 23 H 0.09 5.62 5.44 -2.91 -0.02 5.60 16 24 C 0.02 1.49 5.49 84.85 0.47 1.95 16 25 N -0.91 -55.86 13.96 21.62 0.30 -55.56 16 26 Si 0.96 50.27 28.62 68.60 1.96 52.24 16 27 H -0.28 -14.35 7.11 99.48 0.71 -13.65 16 28 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 29 H -0.26 -14.55 7.11 99.48 0.71 -13.84 16 30 H 0.05 0.61 7.75 -2.39 -0.02 0.59 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 38 H 0.41 3.94 8.02 -92.70 -0.74 3.20 16 39 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.10 1.32 7.56 -2.39 -0.02 1.31 16 42 H 0.41 11.16 5.82 -92.71 -0.54 10.62 16 43 H 0.15 3.52 6.40 -2.91 -0.02 3.50 16 44 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 45 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 46 H 0.12 5.54 5.64 -2.91 -0.02 5.52 16 47 H 0.29 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -81.35 391.06 3.86 -77.49 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.28 Total: 23.48 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.82 Total: -5.01 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -3.86 Total: -91.84 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: 0.21 Total: -56.36 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 1.96 Total: 52.24 kcal Total: -81.35 3.86 -77.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194752793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.224 kcal (2) G-P(sol) polarization free energy of solvation -81.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds