Wall clock time and date at job start Tue Mar 31 2020 18:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46950 * 2 1 4 4 H 1.09001 * 109.46715 * 304.99549 * 3 2 1 5 5 C 1.53001 * 109.46860 * 185.00056 * 3 2 1 6 6 N 1.46494 * 109.47542 * 64.99979 * 3 2 1 7 7 C 1.34776 * 119.99967 * 205.00278 * 6 3 2 8 8 O 1.21282 * 120.00167 * 359.97438 * 7 6 3 9 9 C 1.50703 * 119.99831 * 180.02562 * 7 6 3 10 10 H 1.08996 * 109.47116 * 59.99440 * 9 7 6 11 11 C 1.53005 * 109.46791 * 299.99300 * 9 7 6 12 12 N 1.46501 * 109.46870 * 179.97438 * 9 7 6 13 13 C 1.34780 * 119.99510 * 204.99854 * 12 9 7 14 14 O 1.21590 * 120.00046 * 359.97438 * 13 12 9 15 15 C 1.47535 * 119.99849 * 180.02562 * 13 12 9 16 16 C 1.39666 * 120.19596 * 0.02562 * 15 13 12 17 17 C 1.37830 * 119.92216 * 179.97438 * 16 15 13 18 18 C 1.38580 * 120.32044 * 359.97438 * 17 16 15 19 19 C 1.38026 * 120.40073 * 0.02562 * 18 17 16 20 20 C 1.38831 * 120.07207 * 0.02562 * 19 18 17 21 21 O 1.35519 * 120.16246 * 180.02562 * 20 19 18 22 22 C 1.34818 * 117.00123 * 354.39673 * 21 20 19 23 23 H 1.08011 * 119.99422 * 5.06547 * 22 21 20 24 24 C 1.38693 * 120.00642 * 185.06428 * 22 21 20 25 25 N 1.31525 * 119.99570 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00271 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46871 * 60.00351 * 26 24 22 28 28 H 1.48501 * 109.47057 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47457 * 300.00216 * 26 24 22 30 30 H 1.09003 * 109.46699 * 60.00158 * 1 2 3 31 31 H 1.08997 * 109.47181 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46653 * 300.00264 * 1 2 3 33 33 H 1.08999 * 109.46653 * 239.99736 * 2 1 3 34 34 H 1.09003 * 109.46699 * 119.99841 * 2 1 3 35 35 H 1.08999 * 109.47284 * 59.99756 * 5 3 2 36 36 H 1.08997 * 109.47100 * 179.97438 * 5 3 2 37 37 H 1.09003 * 109.47002 * 299.99839 * 5 3 2 38 38 H 0.97000 * 119.99879 * 24.99918 * 6 3 2 39 39 H 1.08999 * 109.47105 * 180.02562 * 11 9 7 40 40 H 1.09004 * 109.47123 * 299.99999 * 11 9 7 41 41 H 1.08997 * 109.46888 * 60.00491 * 11 9 7 42 42 H 0.96994 * 120.00085 * 24.99659 * 12 9 7 43 43 H 1.08003 * 120.04115 * 359.97438 * 16 15 13 44 44 H 1.07992 * 119.84383 * 180.02562 * 17 16 15 45 45 H 1.07999 * 119.79696 * 180.28209 * 18 17 16 46 46 H 1.07998 * 119.96126 * 180.02562 * 19 18 17 47 47 H 0.96998 * 119.99271 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0975 1.2517 7 6 1.5256 3.4384 1.2994 8 8 1.7327 4.1029 0.3061 9 6 1.1275 4.1123 2.5872 10 1 1.8665 3.8901 3.3571 11 6 -0.2425 3.5955 3.0309 12 7 1.0597 5.5610 2.3796 13 6 1.2246 6.3995 3.4219 14 8 1.4293 5.9536 4.5344 15 6 1.1557 7.8583 3.2130 16 6 0.9192 8.3749 1.9371 17 6 0.8554 9.7387 1.7484 18 6 1.0244 10.6018 2.8194 19 6 1.2587 10.1057 4.0860 20 6 1.3273 8.7349 4.2945 21 8 1.5568 8.2458 5.5374 22 6 1.8253 9.1422 6.5079 23 1 1.7698 10.2000 6.2964 24 6 2.1730 8.7063 7.7778 25 7 2.2411 7.4183 8.0352 26 14 2.5457 9.9484 9.1223 27 1 1.3533 10.8036 9.3505 28 1 2.8878 9.2318 10.3772 29 1 3.6917 10.7972 8.7082 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8532 0.9569 -1.0571 36 1 3.9282 2.4719 -0.1262 37 1 3.9995 0.9053 0.7161 38 1 1.4872 1.5661 2.0462 39 1 -0.5307 4.0831 3.9621 40 1 -0.9815 3.8177 2.2610 41 1 -0.1916 2.5177 3.1854 42 1 0.8960 5.9166 1.4922 43 1 0.7865 7.7064 1.0992 44 1 0.6721 10.1367 0.7614 45 1 0.9682 11.6689 2.6628 46 1 1.3889 10.7848 4.9156 47 1 2.4846 7.1135 8.9232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194752810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:13 Heat of formation + Delta-G solvation = -81.111121 kcal Electronic energy + Delta-G solvation = -28812.785139 eV Core-core repulsion = 24768.240074 eV Total energy + Delta-G solvation = -4044.545065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.36979 -39.40544 -38.04136 -36.66746 -36.29857 -34.48239 -32.71060 -32.31672 -31.22641 -30.10346 -29.16400 -28.85661 -25.40184 -24.91019 -24.00401 -22.89858 -21.57116 -21.04489 -20.42605 -19.78406 -18.19720 -17.93621 -16.73521 -16.68533 -15.97206 -15.64815 -15.05141 -14.66110 -14.41031 -14.38738 -14.25102 -14.06303 -13.95113 -13.75169 -13.69786 -13.56149 -13.33186 -12.78583 -12.60862 -12.47041 -12.32424 -12.18331 -12.09004 -11.69679 -11.66231 -11.51406 -11.41527 -11.26787 -11.09224 -11.01925 -10.86104 -10.76036 -10.46256 -9.83952 -9.55833 -9.28921 -8.87211 -8.85150 -8.62064 -8.23385 -7.27822 -6.42765 -4.02406 1.74874 2.36420 2.52565 2.86588 3.12847 3.15030 3.17077 3.73418 3.77086 3.95196 4.34550 4.60438 4.66547 4.67752 4.73122 5.08848 5.11905 5.16373 5.20610 5.22885 5.27933 5.30920 5.44491 5.46832 5.55593 5.57809 5.59513 5.64911 5.75829 5.79326 5.87612 5.90360 6.00288 6.11880 6.16584 6.23933 6.31791 6.60999 6.72385 6.86342 6.95240 7.10728 7.26941 7.31759 7.32922 7.73253 7.94182 8.05658 8.15855 8.97053 9.08548 9.69799 10.71152 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.002786 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.779906 B =10048.972851 C =11292.584525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C 0.140 3.860 4 H 0.088 0.912 5 C -0.166 4.166 6 N -0.723 5.723 7 C 0.516 3.484 8 O -0.536 6.536 9 C 0.130 3.870 10 H 0.113 0.887 11 C -0.158 4.158 12 N -0.727 5.727 13 C 0.559 3.441 14 O -0.502 6.502 15 C -0.226 4.226 16 C -0.036 4.036 17 C -0.230 4.230 18 C -0.050 4.050 19 C -0.239 4.239 20 C 0.191 3.809 21 O -0.124 6.124 22 C -0.403 4.403 23 H 0.093 0.907 24 C 0.045 3.955 25 N -0.834 5.834 26 Si 0.940 3.060 27 H -0.269 1.269 28 H -0.277 1.277 29 H -0.269 1.269 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.401 0.599 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.402 0.598 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.132 0.868 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 -11.686 -14.195 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 C 0.036 3.964 4 H 0.106 0.894 5 C -0.224 4.224 6 N -0.376 5.376 7 C 0.302 3.698 8 O -0.412 6.412 9 C 0.021 3.979 10 H 0.131 0.869 11 C -0.216 4.216 12 N -0.385 5.385 13 C 0.349 3.651 14 O -0.376 6.376 15 C -0.231 4.231 16 C -0.055 4.055 17 C -0.249 4.249 18 C -0.069 4.069 19 C -0.258 4.258 20 C 0.131 3.869 21 O -0.023 6.023 22 C -0.479 4.479 23 H 0.110 0.890 24 C -0.163 4.163 25 N -0.466 5.466 26 Si 0.764 3.236 27 H -0.194 1.194 28 H -0.202 1.202 29 H -0.194 1.194 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.236 0.764 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.239 0.761 43 H 0.132 0.868 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.149 0.851 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.388 -11.948 -13.738 18.363 hybrid contribution 0.081 0.605 0.516 0.800 sum -2.307 -11.343 -13.222 17.573 Atomic orbital electron populations 1.21787 0.95235 1.01711 1.02402 1.21841 0.96634 0.95357 1.03083 1.21008 0.94986 0.92971 0.87452 0.89367 1.22196 0.95344 1.02908 1.01942 1.46037 1.70973 1.06819 1.13769 1.20830 0.76179 0.82380 0.90424 1.90678 1.49943 1.63972 1.36579 1.20592 0.99731 0.82854 0.94745 0.86926 1.22142 0.95471 1.00807 1.03224 1.45686 1.76702 1.03777 1.12303 1.18229 0.76628 0.86271 0.83984 1.90937 1.46378 1.77589 1.22728 1.18771 1.20143 0.91268 0.92910 1.20826 0.94993 0.95335 0.94306 1.20478 1.12915 0.93087 0.98425 1.20906 0.94936 0.98604 0.92416 1.21147 1.11599 0.94976 0.98091 1.19262 0.90717 0.90975 0.85944 1.84170 1.71290 1.34729 1.12065 1.21446 1.48566 0.88947 0.88971 0.88960 1.25365 0.96197 0.97033 0.97674 1.70120 1.41232 1.13215 1.22001 0.85805 0.79261 0.79303 0.79197 1.19393 1.20191 1.19390 0.92578 0.92561 0.92376 0.90421 0.91300 0.91714 0.91863 0.92373 0.76375 0.90198 0.92122 0.91732 0.76131 0.86834 0.87227 0.87177 0.85071 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.80 37.16 0.36 -0.57 16 2 C -0.13 -0.77 5.47 -26.73 -0.15 -0.91 16 3 C 0.14 1.18 2.57 -67.93 -0.17 1.00 16 4 H 0.09 0.89 7.58 -51.93 -0.39 0.49 16 5 C -0.17 -1.41 9.48 37.16 0.35 -1.06 16 6 N -0.72 -6.76 4.42 -53.81 -0.24 -7.00 16 7 C 0.52 6.74 7.19 -10.98 -0.08 6.66 16 8 O -0.54 -8.59 15.50 5.56 0.09 -8.50 16 9 C 0.13 1.89 2.98 -69.08 -0.21 1.68 16 10 H 0.11 1.78 7.58 -51.93 -0.39 1.39 16 11 C -0.16 -1.94 9.38 37.16 0.35 -1.59 16 12 N -0.73 -12.65 4.90 -55.97 -0.27 -12.93 16 13 C 0.56 12.46 7.73 -12.47 -0.10 12.36 16 14 O -0.50 -13.44 14.83 -16.57 -0.25 -13.69 16 15 C -0.23 -5.05 5.89 -104.81 -0.62 -5.67 16 16 C -0.04 -0.65 9.53 -39.20 -0.37 -1.03 16 17 C -0.23 -3.96 10.03 -39.60 -0.40 -4.36 16 18 C -0.05 -0.91 10.03 -39.53 -0.40 -1.30 16 19 C -0.24 -5.22 9.16 -39.44 -0.36 -5.58 16 20 C 0.19 4.79 6.66 -38.60 -0.26 4.54 16 21 O -0.12 -3.67 7.84 -21.06 -0.17 -3.84 16 22 C -0.40 -11.44 9.49 30.90 0.29 -11.15 16 23 H 0.09 2.37 5.21 -52.48 -0.27 2.10 16 24 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 25 N -0.83 -25.02 13.67 55.48 0.76 -24.26 16 26 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 29 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.37 7.75 -51.93 -0.40 -0.03 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.40 2.88 8.02 -40.82 -0.33 2.55 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.58 7.56 -51.93 -0.39 0.19 16 42 H 0.40 6.44 5.82 -40.82 -0.24 6.20 16 43 H 0.11 1.73 6.40 -52.48 -0.34 1.40 16 44 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 47 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 392.18 15.07 5.91 5.91 Total: -1.00 -35.44 392.18 -7.87 -43.32 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.84 Total: 11.29 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.84 Total: -5.82 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.25 Total: -44.19 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.32 Total: -26.03 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.44 -7.87 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194752810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.795 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds