Wall clock time and date at job start Tue Mar 31 2020 18:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46950 * 2 1 4 4 H 1.09001 * 109.46715 * 304.99549 * 3 2 1 5 5 C 1.53001 * 109.46860 * 185.00056 * 3 2 1 6 6 N 1.46494 * 109.47542 * 64.99979 * 3 2 1 7 7 C 1.34776 * 119.99967 * 205.00278 * 6 3 2 8 8 O 1.21282 * 120.00167 * 359.97438 * 7 6 3 9 9 C 1.50703 * 119.99831 * 180.02562 * 7 6 3 10 10 H 1.08996 * 109.47116 * 59.99440 * 9 7 6 11 11 C 1.53005 * 109.46791 * 299.99300 * 9 7 6 12 12 N 1.46501 * 109.46870 * 179.97438 * 9 7 6 13 13 C 1.34780 * 119.99510 * 204.99854 * 12 9 7 14 14 O 1.21590 * 120.00046 * 359.97438 * 13 12 9 15 15 C 1.47535 * 119.99849 * 180.02562 * 13 12 9 16 16 C 1.39666 * 120.19596 * 0.02562 * 15 13 12 17 17 C 1.37830 * 119.92216 * 179.97438 * 16 15 13 18 18 C 1.38580 * 120.32044 * 359.97438 * 17 16 15 19 19 C 1.38026 * 120.40073 * 0.02562 * 18 17 16 20 20 C 1.38831 * 120.07207 * 0.02562 * 19 18 17 21 21 O 1.35519 * 120.16246 * 180.02562 * 20 19 18 22 22 C 1.34818 * 117.00123 * 354.39673 * 21 20 19 23 23 H 1.08011 * 119.99422 * 5.06547 * 22 21 20 24 24 C 1.38693 * 120.00642 * 185.06428 * 22 21 20 25 25 N 1.31525 * 119.99570 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00271 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46871 * 60.00351 * 26 24 22 28 28 H 1.48501 * 109.47057 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47457 * 300.00216 * 26 24 22 30 30 H 1.09003 * 109.46699 * 60.00158 * 1 2 3 31 31 H 1.08997 * 109.47181 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46653 * 300.00264 * 1 2 3 33 33 H 1.08999 * 109.46653 * 239.99736 * 2 1 3 34 34 H 1.09003 * 109.46699 * 119.99841 * 2 1 3 35 35 H 1.08999 * 109.47284 * 59.99756 * 5 3 2 36 36 H 1.08997 * 109.47100 * 179.97438 * 5 3 2 37 37 H 1.09003 * 109.47002 * 299.99839 * 5 3 2 38 38 H 0.97000 * 119.99879 * 24.99918 * 6 3 2 39 39 H 1.08999 * 109.47105 * 180.02562 * 11 9 7 40 40 H 1.09004 * 109.47123 * 299.99999 * 11 9 7 41 41 H 1.08997 * 109.46888 * 60.00491 * 11 9 7 42 42 H 0.96994 * 120.00085 * 24.99659 * 12 9 7 43 43 H 1.08003 * 120.04115 * 359.97438 * 16 15 13 44 44 H 1.07992 * 119.84383 * 180.02562 * 17 16 15 45 45 H 1.07999 * 119.79696 * 180.28209 * 18 17 16 46 46 H 1.07998 * 119.96126 * 180.02562 * 19 18 17 47 47 H 0.96998 * 119.99271 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0975 1.2517 7 6 1.5256 3.4384 1.2994 8 8 1.7327 4.1029 0.3061 9 6 1.1275 4.1123 2.5872 10 1 1.8665 3.8901 3.3571 11 6 -0.2425 3.5955 3.0309 12 7 1.0597 5.5610 2.3796 13 6 1.2246 6.3995 3.4219 14 8 1.4293 5.9536 4.5344 15 6 1.1557 7.8583 3.2130 16 6 0.9192 8.3749 1.9371 17 6 0.8554 9.7387 1.7484 18 6 1.0244 10.6018 2.8194 19 6 1.2587 10.1057 4.0860 20 6 1.3273 8.7349 4.2945 21 8 1.5568 8.2458 5.5374 22 6 1.8253 9.1422 6.5079 23 1 1.7698 10.2000 6.2964 24 6 2.1730 8.7063 7.7778 25 7 2.2411 7.4183 8.0352 26 14 2.5457 9.9484 9.1223 27 1 1.3533 10.8036 9.3505 28 1 2.8878 9.2318 10.3772 29 1 3.6917 10.7972 8.7082 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8532 0.9569 -1.0571 36 1 3.9282 2.4719 -0.1262 37 1 3.9995 0.9053 0.7161 38 1 1.4872 1.5661 2.0462 39 1 -0.5307 4.0831 3.9621 40 1 -0.9815 3.8177 2.2610 41 1 -0.1916 2.5177 3.1854 42 1 0.8960 5.9166 1.4922 43 1 0.7865 7.7064 1.0992 44 1 0.6721 10.1367 0.7614 45 1 0.9682 11.6689 2.6628 46 1 1.3889 10.7848 4.9156 47 1 2.4846 7.1135 8.9232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194752810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:12 Heat of formation + Delta-G solvation = -105.985927 kcal Electronic energy + Delta-G solvation = -28813.863791 eV Core-core repulsion = 24768.240074 eV Total energy + Delta-G solvation = -4045.623718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.64753 -40.95065 -39.69528 -38.04070 -37.55976 -35.93749 -34.31636 -33.70159 -32.55408 -31.08742 -30.57892 -30.25715 -27.37451 -26.05762 -24.90922 -24.20094 -23.13970 -21.97827 -21.54129 -21.30721 -19.84806 -19.63176 -18.25628 -17.77609 -17.40964 -16.91165 -16.39038 -16.28363 -15.92457 -15.82933 -15.78888 -15.32623 -15.17269 -15.01400 -14.78729 -14.57202 -14.38184 -14.32075 -14.20300 -13.69899 -13.54296 -13.38021 -13.23410 -12.98466 -12.73516 -12.67326 -12.63928 -12.50007 -12.35988 -12.25251 -12.14238 -11.94000 -11.62332 -11.43703 -10.99185 -10.81219 -10.66152 -10.24119 -10.12707 -9.81965 -9.04697 -8.43428 -6.14076 0.10318 0.71651 1.33595 1.43853 1.46322 1.51030 1.77883 2.07383 2.17002 2.42236 2.87890 3.21774 3.45336 3.52680 3.80045 3.91343 4.01812 4.06537 4.07855 4.12726 4.19837 4.28365 4.50172 4.51577 4.55463 4.62883 4.64185 4.76088 4.76503 4.84391 4.97239 4.99165 5.07446 5.12898 5.13924 5.14522 5.18423 5.27152 5.41591 5.44184 5.47634 5.52154 5.59817 5.68373 5.96994 6.15168 6.40851 6.59941 6.95729 7.08108 7.40754 7.80166 8.76695 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.002786 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.779906 B =10048.972851 C =11292.584525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C 0.139 3.861 4 H 0.073 0.927 5 C -0.163 4.163 6 N -0.704 5.704 7 C 0.524 3.476 8 O -0.566 6.566 9 C 0.123 3.877 10 H 0.095 0.905 11 C -0.149 4.149 12 N -0.709 5.709 13 C 0.555 3.445 14 O -0.559 6.559 15 C -0.245 4.245 16 C -0.032 4.032 17 C -0.202 4.202 18 C -0.038 4.038 19 C -0.256 4.256 20 C 0.152 3.848 21 O -0.185 6.185 22 C -0.429 4.429 23 H 0.106 0.894 24 C -0.020 4.020 25 N -0.903 5.903 26 Si 1.021 2.979 27 H -0.254 1.254 28 H -0.273 1.273 29 H -0.256 1.256 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.032 0.968 37 H 0.066 0.934 38 H 0.414 0.586 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.411 0.589 43 H 0.149 0.851 44 H 0.161 0.839 45 H 0.156 0.844 46 H 0.127 0.873 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.424 -11.148 -17.364 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C 0.035 3.965 4 H 0.092 0.908 5 C -0.222 4.222 6 N -0.357 5.357 7 C 0.309 3.691 8 O -0.445 6.445 9 C 0.014 3.986 10 H 0.113 0.887 11 C -0.207 4.207 12 N -0.366 5.366 13 C 0.345 3.655 14 O -0.437 6.437 15 C -0.250 4.250 16 C -0.051 4.051 17 C -0.220 4.220 18 C -0.056 4.056 19 C -0.275 4.275 20 C 0.097 3.903 21 O -0.087 6.087 22 C -0.505 4.505 23 H 0.124 0.876 24 C -0.220 4.220 25 N -0.538 5.538 26 Si 0.839 3.161 27 H -0.178 1.178 28 H -0.197 1.197 29 H -0.180 1.180 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.252 0.748 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.249 0.751 43 H 0.166 0.834 44 H 0.179 0.821 45 H 0.174 0.826 46 H 0.144 0.856 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.074 -11.436 -17.009 20.725 hybrid contribution 0.205 0.432 1.019 1.126 sum -2.869 -11.004 -15.990 19.621 Atomic orbital electron populations 1.21800 0.95296 1.02320 1.01845 1.21805 0.96450 0.93301 1.04472 1.21155 0.94988 0.94335 0.86051 0.90848 1.22178 0.95241 1.01319 1.03412 1.45947 1.69256 1.05534 1.14965 1.20416 0.76185 0.83442 0.89030 1.90662 1.51738 1.64897 1.37213 1.20790 1.00819 0.81399 0.95552 0.88678 1.22074 0.94089 1.02798 1.01779 1.45493 1.74805 1.04849 1.11422 1.18429 0.76017 0.87024 0.84006 1.90917 1.49176 1.78500 1.25118 1.19211 1.20334 0.91326 0.94125 1.21259 0.93576 0.96954 0.93295 1.21148 1.08384 0.92177 1.00303 1.21434 0.92199 1.01246 0.90707 1.21315 1.12615 0.93548 1.00061 1.20009 0.91381 0.93169 0.85734 1.84171 1.74935 1.35904 1.13717 1.22003 1.49110 0.89717 0.89661 0.87631 1.26727 0.95701 0.99296 1.00233 1.70309 1.44839 1.15988 1.22695 0.84637 0.79728 0.76425 0.75275 1.17805 1.19727 1.17983 0.93305 0.91404 0.92796 0.88918 0.90008 0.89797 0.94845 0.91523 0.74849 0.93450 0.90870 0.87947 0.75071 0.83359 0.82109 0.82642 0.85553 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.80 71.99 0.71 -0.80 16 2 C -0.12 -1.09 5.47 30.60 0.17 -0.92 16 3 C 0.14 2.09 2.57 44.99 0.12 2.21 16 4 H 0.07 1.38 7.58 -2.39 -0.02 1.36 16 5 C -0.16 -2.55 9.48 71.98 0.68 -1.87 16 6 N -0.70 -12.25 4.42 -442.54 -1.96 -14.20 16 7 C 0.52 13.42 7.19 87.66 0.63 14.05 16 8 O -0.57 -17.82 15.50 -3.04 -0.05 -17.87 16 9 C 0.12 3.65 2.98 44.25 0.13 3.79 16 10 H 0.10 3.20 7.58 -2.39 -0.02 3.19 16 11 C -0.15 -3.67 9.38 71.98 0.68 -2.99 16 12 N -0.71 -25.16 4.90 -449.26 -2.20 -27.36 16 13 C 0.55 26.04 7.73 86.69 0.67 26.71 16 14 O -0.56 -32.47 14.83 16.90 0.25 -32.22 16 15 C -0.25 -11.19 5.89 -19.99 -0.12 -11.30 16 16 C -0.03 -1.09 9.53 22.52 0.21 -0.88 16 17 C -0.20 -5.93 10.03 22.25 0.22 -5.71 16 18 C -0.04 -1.23 10.03 22.30 0.22 -1.00 16 19 C -0.26 -11.17 9.16 22.36 0.20 -10.97 16 20 C 0.15 8.01 6.66 22.91 0.15 8.17 16 21 O -0.18 -11.79 7.84 0.82 0.01 -11.79 16 22 C -0.43 -25.96 9.49 67.93 0.64 -25.32 16 23 H 0.11 5.73 5.21 -2.91 -0.02 5.71 16 24 C -0.02 -1.19 5.49 84.85 0.47 -0.72 16 25 N -0.90 -58.48 13.67 21.62 0.30 -58.19 16 26 Si 1.02 44.05 29.55 68.60 2.03 46.08 16 27 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 29 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.56 7.75 -2.39 -0.02 0.54 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.41 5.16 8.02 -92.71 -0.74 4.42 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 1.61 8.14 -2.38 -0.02 1.60 16 41 H 0.10 1.70 7.56 -2.39 -0.02 1.68 16 42 H 0.41 12.84 5.82 -92.71 -0.54 12.30 16 43 H 0.15 3.95 6.40 -2.91 -0.02 3.94 16 44 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 45 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 46 H 0.13 5.51 5.64 -2.91 -0.02 5.50 16 47 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -88.00 392.18 3.89 -84.11 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -0.28 Total: 39.01 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 5.79 Total: -7.57 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -3.86 Total: -99.75 kcal Atomic # 8 Polarization: -62.09 SS G_CDS: 0.21 Total: -61.88 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -88.00 3.89 -84.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194752810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.872 kcal (2) G-P(sol) polarization free energy of solvation -87.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds