Wall clock time and date at job start Tue Mar 31 2020 17:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47161 * 2 1 4 4 H 1.09003 * 109.49781 * 184.35353 * 3 2 1 5 5 C 1.52789 * 109.58971 * 64.42911 * 3 2 1 6 6 N 1.47081 * 108.76495 * 186.35456 * 5 3 2 7 7 S 1.65597 * 120.88284 * 231.12193 * 6 5 3 8 8 O 1.42097 * 104.28087 * 153.65344 * 7 6 5 9 9 O 1.42101 * 104.27448 * 25.79834 * 7 6 5 10 10 C 1.81397 * 104.45023 * 269.72848 * 7 6 5 11 11 C 1.53004 * 109.47175 * 179.97438 * 10 7 6 12 12 C 1.50702 * 109.47367 * 179.97438 * 11 10 7 13 13 H 1.08006 * 119.99745 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00235 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99956 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00111 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47132 * 59.99926 * 16 14 12 18 18 H 1.48501 * 109.47208 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46830 * 300.00148 * 16 14 12 20 20 C 1.47081 * 118.23724 * 50.85844 * 6 5 3 21 21 C 1.53240 * 108.51924 * 309.08227 * 20 6 5 22 22 N 1.46902 * 109.49344 * 304.40558 * 3 2 1 23 23 C 1.46903 * 110.99984 * 307.24091 * 22 3 2 24 24 C 1.52994 * 109.46948 * 158.80506 * 23 22 3 25 25 H 1.08997 * 109.47879 * 306.51318 * 24 23 22 26 26 C 1.53005 * 109.47090 * 186.50799 * 24 23 22 27 27 O 1.42904 * 109.47372 * 66.51506 * 24 23 22 28 28 H 1.09001 * 109.47030 * 174.85482 * 1 2 3 29 29 H 1.08994 * 109.46999 * 294.85478 * 1 2 3 30 30 H 1.08992 * 109.47264 * 54.85762 * 1 2 3 31 31 H 1.09003 * 109.46661 * 239.99611 * 2 1 3 32 32 H 1.09006 * 109.46907 * 119.99975 * 2 1 3 33 33 H 1.09002 * 109.55309 * 66.54396 * 5 3 2 34 34 H 1.08995 * 109.45760 * 306.11688 * 5 3 2 35 35 H 1.08998 * 109.47131 * 299.99394 * 10 7 6 36 36 H 1.09002 * 109.47422 * 59.99943 * 10 7 6 37 37 H 1.09000 * 109.47182 * 299.99550 * 11 10 7 38 38 H 1.09002 * 109.46873 * 59.99753 * 11 10 7 39 39 H 0.97004 * 120.00258 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.62923 * 68.79044 * 20 6 5 41 41 H 1.08997 * 109.63131 * 189.37643 * 20 6 5 42 42 H 1.08999 * 109.49574 * 173.79085 * 21 20 6 43 43 H 1.08998 * 109.49273 * 293.84722 * 21 20 6 44 44 H 1.08998 * 109.46629 * 278.80475 * 23 22 3 45 45 H 1.08994 * 109.47008 * 38.80816 * 23 22 3 46 46 H 1.09005 * 109.46409 * 60.00315 * 26 24 23 47 47 H 1.08994 * 109.47258 * 179.97438 * 26 24 23 48 48 H 1.08990 * 109.47248 * 300.00577 * 26 24 23 49 49 H 0.96692 * 114.00600 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1273 1.4439 -0.0780 5 6 1.6250 2.1325 1.2985 6 7 1.9889 3.5552 1.2154 7 16 2.8586 4.2819 2.4227 8 8 3.5307 5.3531 1.7746 9 8 3.5845 3.2170 3.0215 10 6 1.6020 4.9177 3.5661 11 6 2.2886 5.6193 4.7397 12 6 1.2447 6.1481 5.6893 13 1 0.1963 5.9982 5.4772 14 6 1.6279 6.8221 6.8293 15 7 2.9044 7.0042 7.0878 16 14 0.3339 7.4769 8.0067 17 1 -0.4880 6.3496 8.5157 18 1 1.0003 8.1580 9.1457 19 1 -0.5394 8.4441 7.2944 20 6 1.5649 4.3138 0.0288 21 6 1.9873 3.5364 -1.2224 22 7 1.4657 2.1654 -1.1426 23 6 1.7008 1.4388 -2.3974 24 6 0.6868 1.8948 -3.4484 25 1 -0.3218 1.7961 -3.0473 26 6 0.8249 1.0266 -4.7007 27 8 0.9332 3.2612 -3.7868 28 1 -0.3633 -1.0235 -0.0922 29 1 -0.3633 0.4319 0.9324 30 1 -0.3633 0.5915 -0.8403 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.1431 1.6705 2.1389 34 1 0.5475 2.0373 1.4319 35 1 0.9606 5.6270 3.0432 36 1 0.9993 4.0901 3.9404 37 1 2.9298 4.9097 5.2626 38 1 2.8917 6.4468 4.3658 39 1 3.1741 7.4788 7.8897 40 1 0.4814 4.4323 0.0379 41 1 2.0432 5.2932 0.0302 42 1 1.5854 4.0274 -2.1087 43 1 3.0752 3.5090 -1.2836 44 1 2.7103 1.6450 -2.7529 45 1 1.5881 0.3686 -2.2242 46 1 0.6369 -0.0157 -4.4427 47 1 0.1022 1.3511 -5.4493 48 1 1.8334 1.1253 -5.1019 49 1 0.3265 3.6178 -4.4499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246319397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:11 Heat of formation + Delta-G solvation = -120.729847 kcal Electronic energy + Delta-G solvation = -28591.314502 eV Core-core repulsion = 24680.495391 eV Total energy + Delta-G solvation = -3910.819111 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.83502 -37.55213 -36.62955 -35.43444 -34.93633 -33.85832 -33.56093 -31.55373 -31.12480 -29.45039 -27.63471 -25.55727 -24.77477 -24.44928 -22.20841 -21.49587 -21.30267 -19.54382 -18.40016 -17.70353 -17.57247 -16.50963 -16.20826 -15.68614 -15.55695 -15.41566 -15.37266 -14.88480 -14.53677 -14.25506 -13.86594 -13.65253 -13.61130 -13.31302 -12.90546 -12.81524 -12.68060 -12.49406 -12.15613 -12.05106 -12.01301 -11.73237 -11.71572 -11.55199 -11.43667 -11.38748 -11.18605 -11.04810 -10.94421 -10.80142 -10.67328 -10.55346 -10.40365 -10.34747 -10.13020 -9.72797 -9.30247 -8.77511 -8.48229 -8.32119 -6.10326 -4.15932 0.79997 3.05507 3.28669 3.33245 3.35274 3.64716 3.92783 4.33120 4.41740 4.52451 4.57862 4.62221 4.77571 4.81069 4.88086 4.91294 5.08716 5.12364 5.19884 5.24611 5.30504 5.35802 5.41422 5.46512 5.52428 5.56084 5.58707 5.67590 5.70818 5.77294 5.78703 5.80032 5.89164 6.00941 6.06708 6.13154 6.16545 6.27236 6.52767 6.73325 6.97446 6.99555 7.32339 7.38559 7.38656 7.82528 8.19957 8.87268 9.48623 11.00710 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021381 B = 0.002718 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.259656 B =10300.397442 C =10473.744173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.071 3.929 4 H 0.045 0.955 5 C 0.127 3.873 6 N -1.009 6.009 7 S 2.589 3.411 8 O -0.965 6.965 9 O -0.966 6.966 10 C -0.588 4.588 11 C 0.028 3.972 12 C -0.520 4.520 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.891 5.891 16 Si 0.900 3.100 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.123 3.877 21 C 0.040 3.960 22 N -0.524 5.524 23 C 0.052 3.948 24 C 0.108 3.892 25 H 0.064 0.936 26 C -0.186 4.186 27 O -0.562 6.562 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.265 0.735 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.032 0.968 44 H 0.041 0.959 45 H 0.093 0.907 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 -14.083 -22.773 27.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.039 4.039 4 H 0.063 0.937 5 C 0.001 3.999 6 N -0.845 5.845 7 S 2.689 3.311 8 O -0.955 6.955 9 O -0.957 6.957 10 C -0.721 4.721 11 C -0.011 4.011 12 C -0.559 4.559 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.529 5.529 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.003 4.003 21 C -0.089 4.089 22 N -0.249 5.249 23 C -0.076 4.076 24 C 0.048 3.952 25 H 0.082 0.918 26 C -0.244 4.244 27 O -0.368 6.368 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.132 0.868 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.111 0.889 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.774 -14.009 -22.102 26.797 hybrid contribution -0.842 0.402 0.274 0.973 sum -6.616 -13.607 -21.827 26.559 Atomic orbital electron populations 1.21746 0.94793 1.00868 1.03084 1.21661 0.97415 0.94685 1.02166 1.21892 0.97024 0.93457 0.91507 0.93656 1.21475 1.01186 0.79870 0.97338 1.58011 1.74275 1.18122 1.34133 1.05692 0.76650 0.74173 0.74627 1.93522 1.71796 1.56688 1.73526 1.93517 1.69570 1.54741 1.77840 1.30484 1.16207 1.11296 1.14143 1.18959 0.96453 0.95635 0.90028 1.20972 0.92615 1.36441 1.05917 0.92090 1.25069 0.95571 0.95913 0.97946 1.69946 1.14840 1.41326 1.26809 0.86525 0.81325 0.79139 0.80255 1.20074 1.21080 1.20070 1.21534 1.00337 0.94931 0.83488 1.22719 0.97731 0.89015 0.99428 1.61883 1.58753 1.02353 1.01863 1.22314 0.97386 0.98809 0.89116 1.21827 0.98840 0.81361 0.93132 0.91841 1.22492 1.02665 1.00790 0.98423 1.86522 1.60563 1.26394 1.63341 0.93526 0.92401 0.91343 0.91755 0.91011 0.88621 0.90612 0.86255 0.86303 0.94925 0.94914 0.92483 0.91012 0.88626 0.86827 0.94934 0.94107 0.88876 0.91613 0.92224 0.91964 0.77980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.29 37.16 0.35 -0.81 16 2 C -0.12 -1.02 5.12 -26.73 -0.14 -1.16 16 3 C 0.07 0.79 2.28 -67.82 -0.15 0.63 16 4 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 5 C 0.13 1.61 5.76 -3.83 -0.02 1.59 16 6 N -1.01 -14.78 3.27 -113.49 -0.37 -15.15 16 7 S 2.59 48.79 5.47 -107.50 -0.59 48.21 16 8 O -0.96 -20.71 16.61 -57.54 -0.96 -21.66 16 9 O -0.97 -20.57 16.60 -57.54 -0.95 -21.53 16 10 C -0.59 -11.64 6.12 37.16 0.23 -11.42 16 11 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 12 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 13 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 16 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.12 1.59 6.63 -3.60 -0.02 1.56 16 21 C 0.04 0.48 5.38 -3.70 -0.02 0.46 16 22 N -0.52 -5.44 3.48 -226.63 -0.79 -6.23 16 23 C 0.05 0.44 4.16 -3.83 -0.02 0.42 16 24 C 0.11 0.75 3.80 -26.73 -0.10 0.65 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 C -0.19 -0.97 9.53 37.16 0.35 -0.61 16 27 O -0.56 -4.30 10.45 -35.23 -0.37 -4.67 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.48 6.68 -51.93 -0.35 0.14 16 30 H 0.07 0.56 6.91 -51.93 -0.36 0.20 16 31 H 0.06 0.47 6.16 -51.93 -0.32 0.15 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 1.27 6.86 -51.93 -0.36 0.91 16 34 H 0.08 0.84 6.39 -51.93 -0.33 0.51 16 35 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 36 H 0.12 2.13 8.14 -51.92 -0.42 1.70 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.30 6.87 -51.93 -0.36 0.94 16 42 H 0.11 1.27 5.21 -51.93 -0.27 1.00 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.04 0.40 7.98 -51.93 -0.41 -0.02 16 45 H 0.09 0.67 5.18 -51.93 -0.27 0.40 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.37 1.45 9.08 45.56 0.41 1.87 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -35.27 386.84 -10.23 -45.50 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.65 Total: 0.85 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -0.10 Total: -21.45 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.42 Total: -47.47 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -2.28 Total: -47.86 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 48.79 SS G_CDS: -0.59 Total: 48.21 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.27 -10.23 -45.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246319397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.232 kcal (2) G-P(sol) polarization free energy of solvation -35.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds