Wall clock time and date at job start Tue Mar 31 2020 17:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47161 * 2 1 4 4 H 1.09003 * 109.49781 * 184.35353 * 3 2 1 5 5 C 1.52789 * 109.58971 * 64.42911 * 3 2 1 6 6 N 1.47081 * 108.76495 * 186.35456 * 5 3 2 7 7 S 1.65597 * 120.88284 * 231.12193 * 6 5 3 8 8 O 1.42097 * 104.28087 * 153.65344 * 7 6 5 9 9 O 1.42101 * 104.27448 * 25.79834 * 7 6 5 10 10 C 1.81397 * 104.45023 * 269.72848 * 7 6 5 11 11 C 1.53004 * 109.47175 * 179.97438 * 10 7 6 12 12 C 1.50702 * 109.47367 * 179.97438 * 11 10 7 13 13 H 1.08006 * 119.99745 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00235 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99956 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00111 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47132 * 59.99926 * 16 14 12 18 18 H 1.48501 * 109.47208 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46830 * 300.00148 * 16 14 12 20 20 C 1.47081 * 118.23724 * 50.85844 * 6 5 3 21 21 C 1.53240 * 108.51924 * 309.08227 * 20 6 5 22 22 N 1.46902 * 109.49344 * 304.40558 * 3 2 1 23 23 C 1.46903 * 110.99984 * 307.24091 * 22 3 2 24 24 C 1.52994 * 109.46948 * 158.80506 * 23 22 3 25 25 H 1.08997 * 109.47879 * 306.51318 * 24 23 22 26 26 C 1.53005 * 109.47090 * 186.50799 * 24 23 22 27 27 O 1.42904 * 109.47372 * 66.51506 * 24 23 22 28 28 H 1.09001 * 109.47030 * 174.85482 * 1 2 3 29 29 H 1.08994 * 109.46999 * 294.85478 * 1 2 3 30 30 H 1.08992 * 109.47264 * 54.85762 * 1 2 3 31 31 H 1.09003 * 109.46661 * 239.99611 * 2 1 3 32 32 H 1.09006 * 109.46907 * 119.99975 * 2 1 3 33 33 H 1.09002 * 109.55309 * 66.54396 * 5 3 2 34 34 H 1.08995 * 109.45760 * 306.11688 * 5 3 2 35 35 H 1.08998 * 109.47131 * 299.99394 * 10 7 6 36 36 H 1.09002 * 109.47422 * 59.99943 * 10 7 6 37 37 H 1.09000 * 109.47182 * 299.99550 * 11 10 7 38 38 H 1.09002 * 109.46873 * 59.99753 * 11 10 7 39 39 H 0.97004 * 120.00258 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.62923 * 68.79044 * 20 6 5 41 41 H 1.08997 * 109.63131 * 189.37643 * 20 6 5 42 42 H 1.08999 * 109.49574 * 173.79085 * 21 20 6 43 43 H 1.08998 * 109.49273 * 293.84722 * 21 20 6 44 44 H 1.08998 * 109.46629 * 278.80475 * 23 22 3 45 45 H 1.08994 * 109.47008 * 38.80816 * 23 22 3 46 46 H 1.09005 * 109.46409 * 60.00315 * 26 24 23 47 47 H 1.08994 * 109.47258 * 179.97438 * 26 24 23 48 48 H 1.08990 * 109.47248 * 300.00577 * 26 24 23 49 49 H 0.96692 * 114.00600 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1273 1.4439 -0.0780 5 6 1.6250 2.1325 1.2985 6 7 1.9889 3.5552 1.2154 7 16 2.8586 4.2819 2.4227 8 8 3.5307 5.3531 1.7746 9 8 3.5845 3.2170 3.0215 10 6 1.6020 4.9177 3.5661 11 6 2.2886 5.6193 4.7397 12 6 1.2447 6.1481 5.6893 13 1 0.1963 5.9982 5.4772 14 6 1.6279 6.8221 6.8293 15 7 2.9044 7.0042 7.0878 16 14 0.3339 7.4769 8.0067 17 1 -0.4880 6.3496 8.5157 18 1 1.0003 8.1580 9.1457 19 1 -0.5394 8.4441 7.2944 20 6 1.5649 4.3138 0.0288 21 6 1.9873 3.5364 -1.2224 22 7 1.4657 2.1654 -1.1426 23 6 1.7008 1.4388 -2.3974 24 6 0.6868 1.8948 -3.4484 25 1 -0.3218 1.7961 -3.0473 26 6 0.8249 1.0266 -4.7007 27 8 0.9332 3.2612 -3.7868 28 1 -0.3633 -1.0235 -0.0922 29 1 -0.3633 0.4319 0.9324 30 1 -0.3633 0.5915 -0.8403 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.1431 1.6705 2.1389 34 1 0.5475 2.0373 1.4319 35 1 0.9606 5.6270 3.0432 36 1 0.9993 4.0901 3.9404 37 1 2.9298 4.9097 5.2626 38 1 2.8917 6.4468 4.3658 39 1 3.1741 7.4788 7.8897 40 1 0.4814 4.4323 0.0379 41 1 2.0432 5.2932 0.0302 42 1 1.5854 4.0274 -2.1087 43 1 3.0752 3.5090 -1.2836 44 1 2.7103 1.6450 -2.7529 45 1 1.5881 0.3686 -2.2242 46 1 0.6369 -0.0157 -4.4427 47 1 0.1022 1.3511 -5.4493 48 1 1.8334 1.1253 -5.1019 49 1 0.3265 3.6178 -4.4499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246319397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:11 Heat of formation + Delta-G solvation = -148.379538 kcal Electronic energy + Delta-G solvation = -28592.513482 eV Core-core repulsion = 24680.495391 eV Total energy + Delta-G solvation = -3912.018091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.69210 -38.28589 -38.18132 -37.06080 -35.95805 -35.88008 -34.35776 -33.14068 -32.16049 -30.31371 -28.45210 -27.56835 -25.61222 -25.25481 -23.61189 -22.98451 -21.94946 -20.49724 -19.75123 -19.12571 -18.39843 -18.26586 -17.40303 -17.07047 -16.57598 -16.55609 -16.32275 -16.25287 -16.01649 -15.24896 -15.13388 -14.71173 -14.45173 -14.38835 -14.34503 -13.75633 -13.68005 -13.49609 -13.37139 -13.28730 -13.22351 -13.22087 -12.91296 -12.81382 -12.63300 -12.57111 -12.39473 -12.30182 -12.24926 -12.15518 -12.03834 -11.76606 -11.58782 -11.43825 -11.38932 -11.15817 -10.72044 -10.65019 -9.95303 -9.24550 -8.26703 -6.41393 -0.75157 1.40347 1.44311 1.52479 1.69054 2.37741 2.78617 2.86907 3.06260 3.12559 3.42824 3.60437 3.86961 3.93563 4.01303 4.06489 4.13490 4.25233 4.26397 4.31329 4.38037 4.42074 4.47310 4.58551 4.62268 4.71074 4.72843 4.78723 4.89768 4.93333 5.00433 5.05026 5.09368 5.13023 5.23183 5.24447 5.25068 5.28855 5.34423 5.38761 5.61651 5.66080 5.66869 6.04657 6.09481 6.15757 6.71910 7.03094 7.28878 8.85483 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021381 B = 0.002718 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.259656 B =10300.397442 C =10473.744173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.070 3.930 4 H 0.022 0.978 5 C 0.118 3.882 6 N -1.000 6.000 7 S 2.609 3.391 8 O -0.995 6.995 9 O -0.995 6.995 10 C -0.583 4.583 11 C 0.021 3.979 12 C -0.540 4.540 13 H 0.076 0.924 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.262 1.262 18 H -0.284 1.284 19 H -0.262 1.262 20 C 0.117 3.883 21 C 0.045 3.955 22 N -0.516 5.516 23 C 0.049 3.951 24 C 0.111 3.889 25 H 0.069 0.931 26 C -0.179 4.179 27 O -0.582 6.582 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.005 0.995 38 H 0.004 0.996 39 H 0.268 0.732 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.008 0.992 44 H 0.024 0.976 45 H 0.110 0.890 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.052 0.948 49 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.926 -15.265 -24.009 30.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.040 4.040 4 H 0.041 0.959 5 C -0.007 4.007 6 N -0.839 5.839 7 S 2.708 3.292 8 O -0.986 6.986 9 O -0.985 6.985 10 C -0.716 4.716 11 C -0.017 4.017 12 C -0.579 4.579 13 H 0.094 0.906 14 C -0.203 4.203 15 N -0.575 5.575 16 Si 0.799 3.201 17 H -0.187 1.187 18 H -0.209 1.209 19 H -0.187 1.187 20 C -0.008 4.008 21 C -0.085 4.085 22 N -0.241 5.241 23 C -0.079 4.079 24 C 0.052 3.948 25 H 0.087 0.913 26 C -0.237 4.237 27 O -0.391 6.391 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.143 0.857 43 H 0.027 0.973 44 H 0.043 0.957 45 H 0.127 0.873 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.071 0.929 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -8.863 -15.194 -23.354 29.237 hybrid contribution 0.138 0.724 0.552 0.921 sum -8.725 -14.470 -22.801 28.380 Atomic orbital electron populations 1.21712 0.93855 1.01764 1.02725 1.21655 0.98088 0.92627 1.03069 1.21910 0.95892 0.95143 0.91070 0.95948 1.21765 1.02473 0.78317 0.98097 1.57666 1.73964 1.19046 1.33175 1.04794 0.76414 0.73317 0.74637 1.93476 1.72898 1.58075 1.74115 1.93472 1.70683 1.55469 1.78869 1.30363 1.16627 1.12118 1.12447 1.18817 0.96194 0.94666 0.92068 1.21482 0.93658 1.36321 1.06434 0.90552 1.26152 0.97901 0.96156 1.00112 1.70102 1.17335 1.42391 1.27642 0.85337 0.78333 0.78856 0.77561 1.18650 1.20926 1.18703 1.21768 1.01662 0.94467 0.82886 1.22671 0.96357 0.90202 0.99235 1.61948 1.57904 1.01675 1.02526 1.22462 0.97189 0.99615 0.88599 1.21792 0.98228 0.81419 0.93341 0.91331 1.22429 1.02488 1.01020 0.97797 1.86450 1.61544 1.26883 1.64194 0.92079 0.92946 0.91406 0.90278 0.90779 0.89496 0.88303 0.84082 0.84048 0.97660 0.97718 0.92350 0.88533 0.89600 0.85695 0.97323 0.95731 0.87256 0.90642 0.90924 0.92925 0.76061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.29 71.98 0.67 -1.15 16 2 C -0.12 -1.71 5.12 30.59 0.16 -1.55 16 3 C 0.07 1.48 2.28 44.84 0.10 1.58 16 4 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 5 C 0.12 2.86 5.76 86.20 0.50 3.36 16 6 N -1.00 -28.77 3.27 -512.97 -1.68 -30.45 16 7 S 2.61 100.42 5.47 -56.49 -0.31 100.11 16 8 O -1.00 -44.18 16.61 -127.65 -2.12 -46.30 16 9 O -0.99 -43.70 16.60 -127.65 -2.12 -45.82 16 10 C -0.58 -23.03 6.12 71.98 0.44 -22.59 16 11 C 0.02 1.15 4.98 29.85 0.15 1.30 16 12 C -0.54 -30.46 9.11 25.60 0.23 -30.22 16 13 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 14 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 15 N -0.94 -57.78 13.29 21.44 0.28 -57.49 16 16 Si 0.98 43.67 29.54 68.60 2.03 45.69 16 17 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 20 C 0.12 2.91 6.63 86.35 0.57 3.48 16 21 C 0.04 1.04 5.38 86.38 0.46 1.50 16 22 N -0.52 -9.94 3.48 -870.93 -3.03 -12.97 16 23 C 0.05 0.75 4.16 86.30 0.36 1.11 16 24 C 0.11 1.29 3.80 30.59 0.12 1.40 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 C -0.18 -1.42 9.53 71.98 0.69 -0.73 16 27 O -0.58 -7.79 10.45 -148.98 -1.56 -9.35 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.73 6.68 -2.39 -0.02 0.71 16 30 H 0.07 0.89 6.91 -2.39 -0.02 0.87 16 31 H 0.08 0.94 6.16 -2.39 -0.01 0.93 16 32 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.09 2.27 6.86 -2.39 -0.02 2.25 16 34 H 0.10 1.96 6.39 -2.39 -0.02 1.94 16 35 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 36 H 0.14 4.89 8.14 -2.39 -0.02 4.87 16 37 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.09 2.32 6.87 -2.39 -0.02 2.30 16 42 H 0.13 2.65 5.21 -2.39 -0.01 2.64 16 43 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.02 0.46 7.98 -2.39 -0.02 0.44 16 45 H 0.11 1.29 5.18 -2.39 -0.01 1.28 16 46 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 47 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.39 2.18 9.08 -74.06 -0.67 1.51 16 Total: -1.00 -77.95 386.84 -3.33 -81.29 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.26 Total: 17.61 kcal Atomic # 6 Polarization: -47.24 SS G_CDS: 4.91 Total: -42.33 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -4.42 Total: -100.91 kcal Atomic # 8 Polarization: -95.67 SS G_CDS: -5.80 Total: -101.46 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 100.42 SS G_CDS: -0.31 Total: 100.11 kcal Total: -77.95 -3.33 -81.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246319397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.094 kcal (2) G-P(sol) polarization free energy of solvation -77.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds