Wall clock time and date at job start Tue Mar 31 2020 17:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36868 * 120.00064 * 2 1 4 4 H 1.08001 * 120.00052 * 130.81888 * 3 2 1 5 5 C 1.39052 * 120.00002 * 310.82288 * 3 2 1 6 6 N 1.31367 * 120.00090 * 170.08102 * 5 3 2 7 7 Si 1.86795 * 119.99911 * 350.06859 * 5 3 2 8 8 H 1.48507 * 109.47110 * 94.79310 * 7 5 3 9 9 H 1.48500 * 109.47432 * 214.79270 * 7 5 3 10 10 H 1.48504 * 109.47374 * 334.79409 * 7 5 3 11 11 C 1.34783 * 120.00230 * 180.02562 * 2 1 3 12 12 O 1.21594 * 119.99359 * 2.05780 * 11 2 1 13 13 C 1.47720 * 120.00246 * 182.05990 * 11 2 1 14 14 C 1.39647 * 120.15241 * 137.90850 * 13 11 2 15 15 C 1.37933 * 119.84673 * 180.02562 * 14 13 11 16 16 C 1.38368 * 120.15309 * 0.02571 * 15 14 13 17 17 C 1.50703 * 119.84991 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46941 * 89.99790 * 17 16 15 19 19 C 1.34774 * 119.99395 * 180.02562 * 18 17 16 20 20 O 1.21505 * 120.00449 * 359.97438 * 19 18 17 21 21 O 1.34643 * 119.99479 * 180.02562 * 19 18 17 22 22 C 1.45202 * 117.00048 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.46943 * 59.99895 * 22 21 19 24 24 C 1.52997 * 109.47107 * 179.97438 * 22 21 19 25 25 C 1.52994 * 109.46986 * 299.99958 * 22 21 19 26 26 C 1.38380 * 120.30816 * 0.23244 * 16 15 14 27 27 C 1.37945 * 120.14624 * 359.48711 * 26 16 15 28 28 H 1.09003 * 109.46727 * 264.69915 * 1 2 3 29 29 H 1.08993 * 109.47487 * 24.70285 * 1 2 3 30 30 H 1.09005 * 109.47036 * 144.70493 * 1 2 3 31 31 H 0.96992 * 119.99634 * 180.02562 * 6 5 3 32 32 H 1.07998 * 120.07380 * 0.02562 * 14 13 11 33 33 H 1.08006 * 119.92072 * 179.97438 * 15 14 13 34 34 H 1.08998 * 109.47340 * 210.00101 * 17 16 15 35 35 H 1.09000 * 109.46911 * 330.00180 * 17 16 15 36 36 H 0.96997 * 119.99724 * 0.02562 * 18 17 16 37 37 H 1.09000 * 109.47248 * 59.99676 * 23 22 21 38 38 H 1.08993 * 109.47132 * 180.02562 * 23 22 21 39 39 H 1.09001 * 109.47053 * 299.99781 * 23 22 21 40 40 H 1.09004 * 109.47082 * 60.00032 * 24 22 21 41 41 H 1.09003 * 109.46746 * 180.02562 * 24 22 21 42 42 H 1.09000 * 109.46971 * 300.00255 * 24 22 21 43 43 H 1.09001 * 109.47455 * 59.99947 * 25 22 21 44 44 H 1.09003 * 109.47139 * 179.97438 * 25 22 21 45 45 H 1.09000 * 109.47395 * 299.99520 * 25 22 21 46 46 H 1.08000 * 119.92681 * 179.72666 * 26 16 15 47 47 H 1.08004 * 120.07394 * 180.23581 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1853 0.0000 4 1 2.9488 1.3473 0.7078 5 6 1.8152 2.1810 -0.9113 6 7 2.3315 3.3829 -0.7896 7 14 0.6326 1.8096 -2.3086 8 1 -0.7435 2.2002 -1.9096 9 1 1.0348 2.5769 -3.5148 10 1 0.6661 0.3564 -2.6125 11 6 2.1390 -1.1672 -0.0005 12 8 1.5315 -2.2199 -0.0388 13 6 3.6154 -1.1677 0.0455 14 6 4.2916 -2.0787 0.8597 15 6 5.6704 -2.0732 0.8982 16 6 6.3835 -1.1674 0.1329 17 6 7.8897 -1.1671 0.1806 18 7 8.4111 -2.0734 -0.8456 19 6 9.7414 -2.2350 -0.9890 20 8 10.5083 -1.6288 -0.2675 21 8 10.2205 -3.0675 -1.9325 22 6 11.6638 -3.1921 -2.0304 23 6 12.2222 -3.7098 -0.7033 24 6 12.0163 -4.1743 -3.1493 25 6 12.2738 -1.8239 -2.3412 26 6 5.7198 -0.2583 -0.6721 27 6 4.3414 -0.2566 -0.7246 28 1 -0.3633 -0.0949 1.0233 29 1 -0.3634 0.9335 -0.4294 30 1 -0.3633 -0.8388 -0.5938 31 1 2.0981 4.0775 -1.4251 32 1 3.7362 -2.7859 1.4578 33 1 6.1946 -2.7770 1.5278 34 1 8.2589 -0.1583 -0.0040 35 1 8.2222 -1.5014 1.1634 36 1 7.7987 -2.5570 -1.4219 37 1 11.7875 -4.6846 -0.4817 38 1 13.3057 -3.8029 -0.7766 39 1 11.9711 -3.0104 0.0941 40 1 11.6184 -3.8058 -4.0948 41 1 13.0998 -4.2681 -3.2224 42 1 11.5816 -5.1489 -2.9273 43 1 12.0228 -1.1244 -1.5439 44 1 13.3574 -1.9172 -2.4143 45 1 11.8761 -1.4550 -3.2867 46 1 6.2825 0.4488 -1.2635 47 1 3.8247 0.4510 -1.3562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263849799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:15 Heat of formation + Delta-G solvation = -84.544286 kcal Electronic energy + Delta-G solvation = -28454.600261 eV Core-core repulsion = 24409.906323 eV Total energy + Delta-G solvation = -4044.693938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.85993 -39.61093 -38.23079 -37.25574 -35.02374 -34.91279 -34.09307 -32.06101 -31.20823 -30.54603 -27.65657 -27.59961 -27.39455 -25.92801 -24.78996 -22.55936 -22.16451 -21.37526 -20.20802 -19.33386 -18.35909 -17.80202 -16.78718 -16.39889 -16.31118 -15.61948 -15.48220 -15.05488 -14.81312 -14.70939 -14.51666 -14.28563 -13.96420 -13.64334 -13.38991 -13.11658 -12.86136 -12.76549 -12.74521 -12.48805 -12.42209 -12.31257 -12.12857 -12.11796 -11.83659 -11.63812 -11.57133 -11.50891 -11.14703 -10.98877 -10.61898 -10.54057 -10.43742 -10.18909 -10.13505 -9.37236 -9.24545 -8.84538 -8.50887 -8.35282 -7.79816 -6.56460 -4.32105 1.27348 1.86364 2.22153 2.77254 2.97926 3.13216 3.20847 3.54735 4.00606 4.08284 4.24830 4.45141 4.47976 4.52301 4.66515 4.74168 4.84091 5.10724 5.21228 5.28980 5.33401 5.36412 5.43770 5.51551 5.53162 5.62278 5.67090 5.68903 5.73409 5.89374 6.02000 6.03890 6.06275 6.08103 6.21355 6.24735 6.31051 6.42018 6.43434 6.49254 6.75562 6.90120 7.05986 7.27010 7.36244 7.38754 7.95051 8.14144 8.30597 8.80415 9.15009 9.51272 10.51681 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019355 B = 0.002373 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.290659 B =11798.134745 C =12348.688703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.463 5.463 3 C -0.346 4.346 4 H 0.105 0.895 5 C 0.068 3.932 6 N -0.860 5.860 7 Si 0.878 3.122 8 H -0.272 1.272 9 H -0.285 1.285 10 H -0.259 1.259 11 C 0.521 3.479 12 O -0.591 6.591 13 C -0.080 4.080 14 C -0.086 4.086 15 C -0.115 4.115 16 C -0.114 4.114 17 C 0.183 3.817 18 N -0.704 5.704 19 C 0.649 3.351 20 O -0.571 6.571 21 O -0.366 6.366 22 C 0.136 3.864 23 C -0.183 4.183 24 C -0.141 4.141 25 C -0.184 4.184 26 C -0.112 4.112 27 C -0.052 4.052 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.277 0.723 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.408 0.592 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.123 0.877 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.993 -9.978 -2.835 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.183 5.183 3 C -0.474 4.474 4 H 0.122 0.878 5 C -0.140 4.140 6 N -0.495 5.495 7 Si 0.705 3.295 8 H -0.199 1.199 9 H -0.212 1.212 10 H -0.183 1.183 11 C 0.310 3.690 12 O -0.477 6.477 13 C -0.083 4.083 14 C -0.105 4.105 15 C -0.134 4.134 16 C -0.114 4.114 17 C 0.062 3.938 18 N -0.363 5.363 19 C 0.402 3.598 20 O -0.461 6.461 21 O -0.281 6.281 22 C 0.099 3.901 23 C -0.241 4.241 24 C -0.198 4.198 25 C -0.241 4.241 26 C -0.131 4.131 27 C -0.071 4.071 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.243 0.757 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.141 0.859 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 16.129 -9.969 -2.588 19.137 hybrid contribution -0.925 0.072 -0.876 1.276 sum 15.204 -9.897 -3.464 18.469 Atomic orbital electron populations 1.21795 0.82867 1.01000 1.01070 1.43505 1.04310 1.05678 1.64811 1.19069 1.19144 0.90380 1.18782 0.87787 1.25499 0.96625 0.94933 0.96978 1.69649 1.42308 1.01585 1.35951 0.86846 0.80957 0.79818 0.81904 1.19860 1.21201 1.18318 1.18468 0.87024 0.83825 0.79640 1.90648 1.69945 1.31776 1.55282 1.19985 0.93848 0.96351 0.98073 1.21116 0.93762 0.97638 0.97959 1.20803 0.93704 0.98897 0.99968 1.19754 0.93562 0.98286 0.99832 1.20170 0.89535 0.93544 0.90555 1.44935 1.03566 1.48544 1.39287 1.18104 0.83660 0.78591 0.79446 1.90892 1.56474 1.50986 1.47749 1.86314 1.26664 1.61371 1.53732 1.22045 0.74953 0.96490 0.96586 1.22517 1.01363 1.02331 0.97843 1.21862 1.01934 0.98670 0.97349 1.22519 1.01114 0.96975 1.03493 1.21029 0.94546 0.98531 0.98994 1.21767 0.93061 0.95123 0.97128 0.93236 0.92094 0.92132 0.91247 0.85778 0.86158 0.90266 0.90471 0.75679 0.92204 0.91247 0.89307 0.91443 0.90217 0.91483 0.89277 0.91248 0.92143 0.85916 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.61 8.82 59.85 0.53 2.14 16 2 N -0.46 -10.92 2.41 -123.32 -0.30 -11.21 16 3 C -0.35 -8.55 6.61 -15.00 -0.10 -8.65 16 4 H 0.10 2.76 7.47 -52.49 -0.39 2.37 16 5 C 0.07 1.69 5.17 -17.45 -0.09 1.60 16 6 N -0.86 -22.50 13.95 55.50 0.77 -21.72 16 7 Si 0.88 19.51 24.87 -169.99 -4.23 15.28 16 8 H -0.27 -5.86 6.89 56.52 0.39 -5.47 16 9 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.26 -5.89 7.03 56.52 0.40 -5.49 16 11 C 0.52 12.12 7.28 -12.38 -0.09 12.03 16 12 O -0.59 -14.80 16.61 5.28 0.09 -14.71 16 13 C -0.08 -1.60 5.29 -104.97 -0.55 -2.16 16 14 C -0.09 -1.47 9.66 -39.17 -0.38 -1.85 16 15 C -0.12 -1.63 9.68 -39.65 -0.38 -2.02 16 16 C -0.11 -1.57 5.26 -104.52 -0.55 -2.12 16 17 C 0.18 2.22 5.79 -5.19 -0.03 2.19 16 18 N -0.70 -8.24 5.55 -66.46 -0.37 -8.61 16 19 C 0.65 8.39 8.06 54.05 0.44 8.83 16 20 O -0.57 -8.43 11.88 -19.28 -0.23 -8.65 16 21 O -0.37 -4.32 9.94 -40.33 -0.40 -4.72 16 22 C 0.14 1.31 1.13 -90.62 -0.10 1.21 16 23 C -0.18 -1.69 8.37 37.16 0.31 -1.38 16 24 C -0.14 -0.99 8.85 37.16 0.33 -0.66 16 25 C -0.18 -1.74 8.37 37.15 0.31 -1.43 16 26 C -0.11 -1.76 9.68 -39.64 -0.38 -2.15 16 27 C -0.05 -1.00 8.10 -39.16 -0.32 -1.31 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.28 4.25 -51.93 -0.22 1.06 16 30 H 0.06 1.26 7.56 -51.93 -0.39 0.87 16 31 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.12 2.06 8.06 -52.49 -0.42 1.63 16 33 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.41 4.34 8.57 -40.82 -0.35 3.99 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 1.03 5.88 -51.93 -0.31 0.72 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 1.05 5.88 -51.93 -0.31 0.75 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 47 H 0.15 3.13 6.26 -52.48 -0.33 2.80 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -29.33 382.01 -6.90 -36.24 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.94 Total: 8.09 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.06 Total: 4.26 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.11 Total: -41.54 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.54 Total: -28.09 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.23 Total: 15.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.33 -6.90 -36.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263849799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.305 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds