Wall clock time and date at job start Tue Mar 31 2020 17:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36868 * 120.00064 * 2 1 4 4 H 1.08001 * 120.00052 * 130.81888 * 3 2 1 5 5 C 1.39052 * 120.00002 * 310.82288 * 3 2 1 6 6 N 1.31367 * 120.00090 * 170.08102 * 5 3 2 7 7 Si 1.86795 * 119.99911 * 350.06859 * 5 3 2 8 8 H 1.48507 * 109.47110 * 94.79310 * 7 5 3 9 9 H 1.48500 * 109.47432 * 214.79270 * 7 5 3 10 10 H 1.48504 * 109.47374 * 334.79409 * 7 5 3 11 11 C 1.34783 * 120.00230 * 180.02562 * 2 1 3 12 12 O 1.21594 * 119.99359 * 2.05780 * 11 2 1 13 13 C 1.47720 * 120.00246 * 182.05990 * 11 2 1 14 14 C 1.39647 * 120.15241 * 137.90850 * 13 11 2 15 15 C 1.37933 * 119.84673 * 180.02562 * 14 13 11 16 16 C 1.38368 * 120.15309 * 0.02571 * 15 14 13 17 17 C 1.50703 * 119.84991 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46941 * 89.99790 * 17 16 15 19 19 C 1.34774 * 119.99395 * 180.02562 * 18 17 16 20 20 O 1.21505 * 120.00449 * 359.97438 * 19 18 17 21 21 O 1.34643 * 119.99479 * 180.02562 * 19 18 17 22 22 C 1.45202 * 117.00048 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.46943 * 59.99895 * 22 21 19 24 24 C 1.52997 * 109.47107 * 179.97438 * 22 21 19 25 25 C 1.52994 * 109.46986 * 299.99958 * 22 21 19 26 26 C 1.38380 * 120.30816 * 0.23244 * 16 15 14 27 27 C 1.37945 * 120.14624 * 359.48711 * 26 16 15 28 28 H 1.09003 * 109.46727 * 264.69915 * 1 2 3 29 29 H 1.08993 * 109.47487 * 24.70285 * 1 2 3 30 30 H 1.09005 * 109.47036 * 144.70493 * 1 2 3 31 31 H 0.96992 * 119.99634 * 180.02562 * 6 5 3 32 32 H 1.07998 * 120.07380 * 0.02562 * 14 13 11 33 33 H 1.08006 * 119.92072 * 179.97438 * 15 14 13 34 34 H 1.08998 * 109.47340 * 210.00101 * 17 16 15 35 35 H 1.09000 * 109.46911 * 330.00180 * 17 16 15 36 36 H 0.96997 * 119.99724 * 0.02562 * 18 17 16 37 37 H 1.09000 * 109.47248 * 59.99676 * 23 22 21 38 38 H 1.08993 * 109.47132 * 180.02562 * 23 22 21 39 39 H 1.09001 * 109.47053 * 299.99781 * 23 22 21 40 40 H 1.09004 * 109.47082 * 60.00032 * 24 22 21 41 41 H 1.09003 * 109.46746 * 180.02562 * 24 22 21 42 42 H 1.09000 * 109.46971 * 300.00255 * 24 22 21 43 43 H 1.09001 * 109.47455 * 59.99947 * 25 22 21 44 44 H 1.09003 * 109.47139 * 179.97438 * 25 22 21 45 45 H 1.09000 * 109.47395 * 299.99520 * 25 22 21 46 46 H 1.08000 * 119.92681 * 179.72666 * 26 16 15 47 47 H 1.08004 * 120.07394 * 180.23581 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1853 0.0000 4 1 2.9488 1.3473 0.7078 5 6 1.8152 2.1810 -0.9113 6 7 2.3315 3.3829 -0.7896 7 14 0.6326 1.8096 -2.3086 8 1 -0.7435 2.2002 -1.9096 9 1 1.0348 2.5769 -3.5148 10 1 0.6661 0.3564 -2.6125 11 6 2.1390 -1.1672 -0.0005 12 8 1.5315 -2.2199 -0.0388 13 6 3.6154 -1.1677 0.0455 14 6 4.2916 -2.0787 0.8597 15 6 5.6704 -2.0732 0.8982 16 6 6.3835 -1.1674 0.1329 17 6 7.8897 -1.1671 0.1806 18 7 8.4111 -2.0734 -0.8456 19 6 9.7414 -2.2350 -0.9890 20 8 10.5083 -1.6288 -0.2675 21 8 10.2205 -3.0675 -1.9325 22 6 11.6638 -3.1921 -2.0304 23 6 12.2222 -3.7098 -0.7033 24 6 12.0163 -4.1743 -3.1493 25 6 12.2738 -1.8239 -2.3412 26 6 5.7198 -0.2583 -0.6721 27 6 4.3414 -0.2566 -0.7246 28 1 -0.3633 -0.0949 1.0233 29 1 -0.3634 0.9335 -0.4294 30 1 -0.3633 -0.8388 -0.5938 31 1 2.0981 4.0775 -1.4251 32 1 3.7362 -2.7859 1.4578 33 1 6.1946 -2.7770 1.5278 34 1 8.2589 -0.1583 -0.0040 35 1 8.2222 -1.5014 1.1634 36 1 7.7987 -2.5570 -1.4219 37 1 11.7875 -4.6846 -0.4817 38 1 13.3057 -3.8029 -0.7766 39 1 11.9711 -3.0104 0.0941 40 1 11.6184 -3.8058 -4.0948 41 1 13.0998 -4.2681 -3.2224 42 1 11.5816 -5.1489 -2.9273 43 1 12.0228 -1.1244 -1.5439 44 1 13.3574 -1.9172 -2.4143 45 1 11.8761 -1.4550 -3.2867 46 1 6.2825 0.4488 -1.2635 47 1 3.8247 0.4510 -1.3562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263849799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:14 Heat of formation + Delta-G solvation = -102.657340 kcal Electronic energy + Delta-G solvation = -28455.385702 eV Core-core repulsion = 24409.906323 eV Total energy + Delta-G solvation = -4045.479379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.79047 -41.18069 -39.63573 -38.27099 -36.89368 -35.98788 -34.91061 -33.98997 -32.48105 -31.87580 -28.89840 -28.31641 -28.25741 -27.50268 -26.46807 -23.64402 -23.49187 -22.59483 -21.17009 -20.97284 -19.54035 -19.27743 -18.16153 -17.67222 -17.37045 -17.09781 -16.75060 -16.39965 -16.25762 -16.00087 -15.64188 -15.33517 -15.27667 -14.94466 -14.62371 -14.40024 -14.35291 -14.17653 -14.07934 -13.85723 -13.37188 -13.33116 -13.27625 -13.03129 -12.86826 -12.82306 -12.81958 -12.49401 -12.42596 -12.30607 -12.24684 -11.96358 -11.90963 -11.34877 -11.22309 -11.11886 -10.67261 -10.21861 -9.86561 -9.73584 -9.65317 -8.50066 -6.28030 -0.05758 0.54174 1.19171 1.25952 1.32420 1.41540 1.79262 1.89229 2.16150 2.57395 2.78767 3.01009 3.31588 3.60624 3.79554 3.84259 3.93090 3.99144 4.03775 4.13074 4.32974 4.39212 4.50332 4.52914 4.55422 4.65310 4.65983 4.73956 4.78059 4.80904 4.82341 4.89613 4.91958 4.97174 5.09332 5.17748 5.24312 5.32784 5.39906 5.40695 5.42864 5.58161 5.60581 5.65485 6.01175 6.05699 6.17131 6.41999 6.89217 7.26501 7.35582 7.65120 8.61438 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019355 B = 0.002373 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.290659 B =11798.134745 C =12348.688703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.475 5.475 3 C -0.335 4.335 4 H 0.078 0.922 5 C 0.037 3.963 6 N -0.895 5.895 7 Si 0.926 3.074 8 H -0.256 1.256 9 H -0.282 1.282 10 H -0.270 1.270 11 C 0.516 3.484 12 O -0.615 6.615 13 C -0.114 4.114 14 C -0.088 4.088 15 C -0.099 4.099 16 C -0.091 4.091 17 C 0.190 3.810 18 N -0.699 5.699 19 C 0.647 3.353 20 O -0.591 6.591 21 O -0.371 6.371 22 C 0.124 3.876 23 C -0.179 4.179 24 C -0.137 4.137 25 C -0.180 4.180 26 C -0.109 4.109 27 C -0.068 4.068 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.281 0.719 32 H 0.128 0.872 33 H 0.157 0.843 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.414 0.586 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.059 0.941 46 H 0.138 0.862 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.702 -11.341 -3.203 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.195 5.195 3 C -0.463 4.463 4 H 0.096 0.904 5 C -0.168 4.168 6 N -0.531 5.531 7 Si 0.751 3.249 8 H -0.181 1.181 9 H -0.208 1.208 10 H -0.194 1.194 11 C 0.307 3.693 12 O -0.502 6.502 13 C -0.117 4.117 14 C -0.107 4.107 15 C -0.118 4.118 16 C -0.092 4.092 17 C 0.069 3.931 18 N -0.358 5.358 19 C 0.401 3.599 20 O -0.483 6.483 21 O -0.286 6.286 22 C 0.088 3.912 23 C -0.236 4.236 24 C -0.194 4.194 25 C -0.238 4.238 26 C -0.128 4.128 27 C -0.087 4.087 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.175 0.825 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.250 0.750 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.156 0.844 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.826 -11.334 -2.961 21.331 hybrid contribution -1.310 0.423 -0.722 1.554 sum 16.516 -10.912 -3.683 20.134 Atomic orbital electron populations 1.21896 0.81744 1.01235 1.02252 1.43652 1.05243 1.05447 1.65206 1.18748 1.18690 0.90698 1.18123 0.90437 1.25927 0.97910 0.94605 0.98400 1.69709 1.43941 1.02406 1.37083 0.86093 0.80204 0.78833 0.79740 1.18145 1.20814 1.19437 1.19007 0.88519 0.83287 0.78515 1.90607 1.70932 1.32324 1.56293 1.19932 0.92276 0.98742 1.00704 1.21244 0.95082 0.96926 0.97474 1.21131 0.92443 0.98809 0.99373 1.19886 0.94574 0.96753 0.97990 1.20095 0.87783 0.93914 0.91346 1.44811 1.03451 1.48356 1.39212 1.18195 0.83707 0.78554 0.79456 1.90894 1.57026 1.51782 1.48550 1.86327 1.28198 1.60867 1.53165 1.22419 0.73816 0.97242 0.97769 1.22470 1.02802 1.01591 0.96768 1.21891 1.03463 0.97859 0.96141 1.22480 1.02583 0.96353 1.02351 1.21164 0.93221 0.99125 0.99260 1.21525 0.94435 0.95100 0.97601 0.91637 0.91830 0.91816 0.90850 0.85392 0.82532 0.90205 0.89225 0.74953 0.91932 0.89105 0.91821 0.91414 0.87908 0.91223 0.91865 0.89059 0.92175 0.84375 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.01 8.82 127.77 1.13 4.14 16 2 N -0.48 -22.79 2.41 -662.32 -1.60 -24.39 16 3 C -0.33 -16.97 6.61 84.10 0.56 -16.42 16 4 H 0.08 4.30 7.47 -2.91 -0.02 4.28 16 5 C 0.04 1.85 5.17 84.96 0.44 2.29 16 6 N -0.90 -47.57 13.95 21.68 0.30 -47.27 16 7 Si 0.93 40.32 24.87 68.60 1.71 42.02 16 8 H -0.26 -10.44 6.89 99.48 0.69 -9.75 16 9 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.27 -12.13 7.03 99.48 0.70 -11.43 16 11 C 0.52 24.48 7.28 86.75 0.63 25.11 16 12 O -0.61 -31.15 16.61 -4.01 -0.07 -31.22 16 13 C -0.11 -4.65 5.29 -20.09 -0.11 -4.75 16 14 C -0.09 -2.95 9.66 22.54 0.22 -2.73 16 15 C -0.10 -2.56 9.68 22.23 0.22 -2.35 16 16 C -0.09 -2.32 5.26 -19.80 -0.10 -2.43 16 17 C 0.19 4.11 5.79 85.63 0.50 4.61 16 18 N -0.70 -14.84 5.55 -594.60 -3.30 -18.14 16 19 C 0.65 15.76 8.06 129.79 1.05 16.81 16 20 O -0.59 -16.82 11.88 19.82 0.24 -16.59 16 21 O -0.37 -8.16 9.94 -55.52 -0.55 -8.71 16 22 C 0.12 2.14 1.13 -10.79 -0.01 2.13 16 23 C -0.18 -2.98 8.37 71.98 0.60 -2.37 16 24 C -0.14 -1.55 8.85 71.98 0.64 -0.91 16 25 C -0.18 -3.13 8.37 71.98 0.60 -2.53 16 26 C -0.11 -3.34 9.68 22.23 0.22 -3.13 16 27 C -0.07 -2.64 8.10 22.54 0.18 -2.46 16 28 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.06 2.63 4.25 -2.39 -0.01 2.62 16 30 H 0.06 2.63 7.56 -2.38 -0.02 2.62 16 31 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 32 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 34 H 0.08 1.79 8.08 -2.39 -0.02 1.77 16 35 H 0.09 1.80 8.08 -2.39 -0.02 1.78 16 36 H 0.41 7.87 8.57 -92.71 -0.79 7.08 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 40 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 1.45 5.88 -2.39 -0.01 1.44 16 44 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 47 H 0.12 5.33 6.26 -2.91 -0.02 5.31 16 Total: -1.00 -64.38 382.01 3.64 -60.74 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.17 Total: 28.55 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 6.75 Total: 15.01 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -4.60 Total: -89.80 kcal Atomic # 8 Polarization: -56.14 SS G_CDS: -0.38 Total: -56.52 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.71 Total: 42.02 kcal Total: -64.38 3.64 -60.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263849799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.922 kcal (2) G-P(sol) polarization free energy of solvation -64.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds