Wall clock time and date at job start Tue Mar 31 2020 18:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47328 * 2 1 4 4 N 1.46504 * 109.46786 * 180.02562 * 3 2 1 5 5 C 1.34782 * 119.99389 * 180.02562 * 4 3 2 6 6 O 1.21275 * 120.00416 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99292 * 179.97438 * 5 4 3 8 8 C 1.53008 * 109.46709 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47199 * 180.02562 * 8 7 5 10 10 O 1.21279 * 119.99653 * 0.02562 * 9 8 7 11 11 N 1.34769 * 119.99900 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99695 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.46837 * 180.02562 * 12 11 9 14 14 C 1.38305 * 119.93408 * 89.99748 * 13 12 11 15 15 C 1.38101 * 120.07071 * 179.97438 * 14 13 12 16 16 C 1.38876 * 119.92956 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06861 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53840 * 17 16 15 19 19 H 1.08003 * 120.00029 * 354.94359 * 18 17 16 20 20 C 1.38659 * 120.00122 * 174.94542 * 18 17 16 21 21 N 1.31558 * 119.99705 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00035 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47181 * 89.99980 * 22 20 18 24 24 H 1.48498 * 109.47260 * 210.00361 * 22 20 18 25 25 H 1.48502 * 109.47130 * 330.00179 * 22 20 18 26 26 C 1.38880 * 119.86555 * 0.27954 * 16 15 14 27 27 C 1.38102 * 119.92551 * 359.44514 * 26 16 15 28 28 H 1.08998 * 109.46350 * 299.99495 * 1 2 3 29 29 H 1.09004 * 109.47005 * 59.99228 * 1 2 3 30 30 H 1.08995 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46770 * 240.00368 * 2 1 3 32 32 H 1.08994 * 109.47222 * 120.00783 * 2 1 3 33 33 H 1.08998 * 109.46993 * 60.00898 * 3 2 1 34 34 H 1.08994 * 109.47609 * 300.00546 * 3 2 1 35 35 H 0.96998 * 120.00165 * 0.02562 * 4 3 2 36 36 H 1.08997 * 109.47469 * 60.00584 * 7 5 4 37 37 H 1.08996 * 109.47641 * 299.99826 * 7 5 4 38 38 H 1.09003 * 109.47040 * 60.00262 * 8 7 5 39 39 H 1.08996 * 109.46932 * 300.00266 * 8 7 5 40 40 H 0.96998 * 120.00328 * 0.02562 * 11 9 8 41 41 H 1.08986 * 109.47314 * 59.99652 * 12 11 9 42 42 H 1.09005 * 109.46923 * 299.99397 * 12 11 9 43 43 H 1.07999 * 119.96326 * 0.02562 * 14 13 12 44 44 H 1.07997 * 120.03156 * 180.02562 * 15 14 13 45 45 H 0.96997 * 119.99350 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.04097 * 179.72435 * 26 16 15 47 47 H 1.07997 * 119.96688 * 180.27743 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1790 2.6096 -0.0002 6 8 3.5727 3.6599 0.0011 7 6 5.6860 2.6094 -0.0003 8 6 6.1961 4.0520 -0.0004 9 6 7.7032 4.0519 -0.0011 10 8 8.3095 3.0016 -0.0019 11 7 8.3770 5.2191 -0.0008 12 6 9.8421 5.2190 -0.0020 13 6 10.3444 6.6398 -0.0007 14 6 10.5754 7.2890 1.1984 15 6 11.0363 8.5909 1.2029 16 6 11.2673 9.2483 0.0015 17 8 11.7208 10.5278 0.0026 18 6 12.0360 11.0644 1.1986 19 1 11.8466 10.5102 2.1061 20 6 12.6033 12.3280 1.2637 21 7 12.9114 12.8514 2.4307 22 14 12.9315 13.2864 -0.3057 23 1 11.7419 14.1094 -0.6410 24 1 14.1067 14.1724 -0.1080 25 1 13.2069 12.3392 -1.4157 26 6 11.0283 8.5958 -1.2009 27 6 10.5729 7.2920 -1.1987 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6769 1.9562 0.8901 34 1 1.6768 1.9564 -0.8899 35 1 3.9901 0.6023 -0.0013 36 1 6.0493 2.0960 -0.8904 37 1 6.0494 2.0953 0.8895 38 1 5.8328 4.5659 0.8896 39 1 5.8327 4.5657 -0.8903 40 1 7.8921 6.0591 0.0003 41 1 10.2046 4.7058 -0.8925 42 1 10.2061 4.7045 0.8874 43 1 10.3960 6.7771 2.1323 44 1 11.2169 9.0971 2.1396 45 1 13.3086 13.7351 2.4762 46 1 11.2027 9.1058 -2.1368 47 1 10.3911 6.7825 -2.1334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264648690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:48 Heat of formation + Delta-G solvation = -98.643131 kcal Electronic energy + Delta-G solvation = -26465.871728 eV Core-core repulsion = 22420.566418 eV Total energy + Delta-G solvation = -4045.305310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.31129 -39.62853 -39.12791 -37.06444 -36.27602 -34.50481 -33.35747 -32.77493 -32.46837 -30.42155 -30.15324 -27.53981 -26.20204 -25.11581 -23.91886 -22.19748 -22.15832 -20.80420 -20.62745 -20.14558 -18.01845 -17.88301 -17.38450 -16.56492 -16.54713 -16.38230 -15.89554 -15.83015 -15.16068 -14.77132 -14.60119 -14.20561 -14.12233 -13.90064 -13.59397 -13.56748 -13.40553 -13.23468 -12.93773 -12.75885 -12.62483 -12.58588 -12.28956 -12.24259 -11.98734 -11.69114 -11.49429 -11.47501 -11.41790 -10.97338 -10.87246 -10.77015 -10.22451 -10.19065 -9.94302 -9.49947 -9.49008 -9.03027 -8.95471 -8.38864 -7.48746 -6.50233 -4.17275 1.93996 2.01863 2.31160 2.59978 2.71611 3.17099 3.20354 3.34359 3.40204 4.16505 4.25120 4.33251 4.41229 4.41259 4.62219 4.72827 4.73620 4.79245 4.90280 5.02406 5.06952 5.08799 5.15522 5.24698 5.32949 5.34805 5.46493 5.52971 5.55149 5.57298 5.64532 5.66427 5.71482 5.85013 6.01515 6.02339 6.23730 6.42873 6.46974 6.66938 6.89110 7.06609 7.11447 7.17935 7.48694 7.53433 7.70268 7.85210 7.93854 8.18699 8.84277 9.44782 10.56909 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.001491 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.447884 B =18777.181907 C =19200.202240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.116 3.884 4 N -0.735 5.735 5 C 0.513 3.487 6 O -0.540 6.540 7 C -0.123 4.123 8 C -0.127 4.127 9 C 0.510 3.490 10 O -0.552 6.552 11 N -0.721 5.721 12 C 0.177 3.823 13 C -0.207 4.207 14 C -0.052 4.052 15 C -0.224 4.224 16 C 0.167 3.833 17 O -0.213 6.213 18 C -0.392 4.392 19 H 0.108 0.892 20 C 0.065 3.935 21 N -0.875 5.875 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.195 4.195 27 C -0.056 4.056 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.402 0.598 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.404 0.596 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.135 0.865 45 H 0.281 0.719 46 H 0.118 0.882 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.677 -23.769 -5.414 30.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.387 5.387 5 C 0.299 3.701 6 O -0.417 6.417 7 C -0.164 4.164 8 C -0.167 4.167 9 C 0.297 3.703 10 O -0.431 6.431 11 N -0.372 5.372 12 C 0.055 3.945 13 C -0.209 4.209 14 C -0.071 4.071 15 C -0.243 4.243 16 C 0.114 3.886 17 O -0.117 6.117 18 C -0.467 4.467 19 H 0.125 0.875 20 C -0.139 4.139 21 N -0.512 5.512 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.214 4.214 27 C -0.075 4.075 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.236 0.764 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.238 0.762 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.129 0.871 44 H 0.152 0.848 45 H 0.091 0.909 46 H 0.136 0.864 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.528 -23.373 -5.463 30.322 hybrid contribution 0.217 0.573 -0.340 0.701 sum -18.311 -22.800 -5.803 29.813 Atomic orbital electron populations 1.21683 0.94484 1.02233 1.02420 1.21741 0.97086 0.95795 1.02793 1.21414 0.79597 0.97178 1.02533 1.46044 1.07413 1.08919 1.76373 1.20800 0.90379 0.83499 0.75378 1.90724 1.70667 1.31227 1.49081 1.21358 0.90629 0.98440 1.05944 1.21377 0.91758 0.97556 1.06005 1.20631 0.89921 0.83855 0.75924 1.90685 1.70670 1.31325 1.50433 1.46335 1.07873 1.08588 1.74451 1.19994 0.78663 0.93906 1.01933 1.19287 1.11929 0.95948 0.93707 1.20700 0.95948 0.93858 0.96581 1.21281 1.08251 0.95979 0.98795 1.19185 0.91794 0.84236 0.93429 1.83571 1.72093 1.22025 1.34005 1.20794 1.41620 1.01559 0.82768 0.87492 1.24487 0.95160 0.96036 0.98208 1.69644 1.40335 1.17514 1.23718 0.86173 0.78226 0.79731 0.82754 1.19799 1.20693 1.18307 1.20211 1.09760 0.95351 0.96091 1.20534 0.96871 0.93403 0.96698 0.92289 0.92305 0.92128 0.91261 0.91246 0.91448 0.91469 0.76376 0.88036 0.88007 0.88083 0.88123 0.76161 0.91455 0.91444 0.87099 0.84781 0.90901 0.86358 0.86774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.91 37.16 0.37 -0.15 16 2 C -0.14 -0.49 6.05 -26.73 -0.16 -0.65 16 3 C 0.12 0.70 5.67 -4.04 -0.02 0.67 16 4 N -0.73 -4.55 5.56 -60.29 -0.33 -4.89 16 5 C 0.51 4.60 7.83 -10.98 -0.09 4.51 16 6 O -0.54 -6.93 15.98 5.56 0.09 -6.84 16 7 C -0.12 -0.97 4.99 -27.88 -0.14 -1.11 16 8 C -0.13 -1.15 4.99 -27.88 -0.14 -1.29 16 9 C 0.51 5.95 7.83 -10.99 -0.09 5.86 16 10 O -0.55 -8.10 15.98 5.56 0.09 -8.01 16 11 N -0.72 -8.32 5.55 -61.47 -0.34 -8.66 16 12 C 0.18 2.32 5.80 -5.19 -0.03 2.29 16 13 C -0.21 -3.14 5.25 -104.57 -0.55 -3.69 16 14 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 15 C -0.22 -4.56 9.17 -39.40 -0.36 -4.92 16 16 C 0.17 3.66 6.65 -39.11 -0.26 3.40 16 17 O -0.21 -5.42 8.59 0.05 0.00 -5.42 16 18 C -0.39 -10.73 9.95 30.89 0.31 -10.42 16 19 H 0.11 2.98 5.44 -52.48 -0.29 2.70 16 20 C 0.07 1.78 5.49 -17.51 -0.10 1.69 16 21 N -0.88 -24.71 13.96 55.48 0.77 -23.94 16 22 Si 0.91 21.14 28.62 -169.99 -4.86 16.28 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 26 C -0.19 -3.62 9.99 -39.39 -0.39 -4.02 16 27 C -0.06 -0.88 9.69 -39.61 -0.38 -1.26 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.40 1.43 8.47 -40.82 -0.35 1.08 16 36 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.10 0.90 8.10 -51.93 -0.42 0.47 16 39 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 40 H 0.40 4.17 8.46 -40.82 -0.35 3.82 16 41 H 0.07 0.88 8.08 -51.94 -0.42 0.46 16 42 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 45 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 47 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 400.56 15.07 6.04 6.04 Total: -1.00 -32.49 400.56 -8.13 -40.62 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.16 Total: 5.16 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.42 Total: -10.34 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.10 Total: -37.48 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.18 Total: -20.27 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.86 Total: 16.28 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.49 -8.13 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264648690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.023 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds