Wall clock time and date at job start Tue Mar 31 2020 18:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47328 * 2 1 4 4 N 1.46504 * 109.46786 * 180.02562 * 3 2 1 5 5 C 1.34782 * 119.99389 * 180.02562 * 4 3 2 6 6 O 1.21275 * 120.00416 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99292 * 179.97438 * 5 4 3 8 8 C 1.53008 * 109.46709 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47199 * 180.02562 * 8 7 5 10 10 O 1.21279 * 119.99653 * 0.02562 * 9 8 7 11 11 N 1.34769 * 119.99900 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99695 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.46837 * 180.02562 * 12 11 9 14 14 C 1.38305 * 119.93408 * 89.99748 * 13 12 11 15 15 C 1.38101 * 120.07071 * 179.97438 * 14 13 12 16 16 C 1.38876 * 119.92956 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06861 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53840 * 17 16 15 19 19 H 1.08003 * 120.00029 * 354.94359 * 18 17 16 20 20 C 1.38659 * 120.00122 * 174.94542 * 18 17 16 21 21 N 1.31558 * 119.99705 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00035 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47181 * 89.99980 * 22 20 18 24 24 H 1.48498 * 109.47260 * 210.00361 * 22 20 18 25 25 H 1.48502 * 109.47130 * 330.00179 * 22 20 18 26 26 C 1.38880 * 119.86555 * 0.27954 * 16 15 14 27 27 C 1.38102 * 119.92551 * 359.44514 * 26 16 15 28 28 H 1.08998 * 109.46350 * 299.99495 * 1 2 3 29 29 H 1.09004 * 109.47005 * 59.99228 * 1 2 3 30 30 H 1.08995 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46770 * 240.00368 * 2 1 3 32 32 H 1.08994 * 109.47222 * 120.00783 * 2 1 3 33 33 H 1.08998 * 109.46993 * 60.00898 * 3 2 1 34 34 H 1.08994 * 109.47609 * 300.00546 * 3 2 1 35 35 H 0.96998 * 120.00165 * 0.02562 * 4 3 2 36 36 H 1.08997 * 109.47469 * 60.00584 * 7 5 4 37 37 H 1.08996 * 109.47641 * 299.99826 * 7 5 4 38 38 H 1.09003 * 109.47040 * 60.00262 * 8 7 5 39 39 H 1.08996 * 109.46932 * 300.00266 * 8 7 5 40 40 H 0.96998 * 120.00328 * 0.02562 * 11 9 8 41 41 H 1.08986 * 109.47314 * 59.99652 * 12 11 9 42 42 H 1.09005 * 109.46923 * 299.99397 * 12 11 9 43 43 H 1.07999 * 119.96326 * 0.02562 * 14 13 12 44 44 H 1.07997 * 120.03156 * 180.02562 * 15 14 13 45 45 H 0.96997 * 119.99350 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.04097 * 179.72435 * 26 16 15 47 47 H 1.07997 * 119.96688 * 180.27743 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1790 2.6096 -0.0002 6 8 3.5727 3.6599 0.0011 7 6 5.6860 2.6094 -0.0003 8 6 6.1961 4.0520 -0.0004 9 6 7.7032 4.0519 -0.0011 10 8 8.3095 3.0016 -0.0019 11 7 8.3770 5.2191 -0.0008 12 6 9.8421 5.2190 -0.0020 13 6 10.3444 6.6398 -0.0007 14 6 10.5754 7.2890 1.1984 15 6 11.0363 8.5909 1.2029 16 6 11.2673 9.2483 0.0015 17 8 11.7208 10.5278 0.0026 18 6 12.0360 11.0644 1.1986 19 1 11.8466 10.5102 2.1061 20 6 12.6033 12.3280 1.2637 21 7 12.9114 12.8514 2.4307 22 14 12.9315 13.2864 -0.3057 23 1 11.7419 14.1094 -0.6410 24 1 14.1067 14.1724 -0.1080 25 1 13.2069 12.3392 -1.4157 26 6 11.0283 8.5958 -1.2009 27 6 10.5729 7.2920 -1.1987 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6769 1.9562 0.8901 34 1 1.6768 1.9564 -0.8899 35 1 3.9901 0.6023 -0.0013 36 1 6.0493 2.0960 -0.8904 37 1 6.0494 2.0953 0.8895 38 1 5.8328 4.5659 0.8896 39 1 5.8327 4.5657 -0.8903 40 1 7.8921 6.0591 0.0003 41 1 10.2046 4.7058 -0.8925 42 1 10.2061 4.7045 0.8874 43 1 10.3960 6.7771 2.1323 44 1 11.2169 9.0971 2.1396 45 1 13.3086 13.7351 2.4762 46 1 11.2027 9.1058 -2.1368 47 1 10.3911 6.7825 -2.1334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264648690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:47 Heat of formation + Delta-G solvation = -120.909112 kcal Electronic energy + Delta-G solvation = -26466.837254 eV Core-core repulsion = 22420.566418 eV Total energy + Delta-G solvation = -4046.270836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.19414 -40.88925 -40.28852 -38.60522 -36.80966 -35.65993 -34.44914 -34.04982 -33.31325 -31.88808 -31.49854 -28.36459 -27.55048 -26.36167 -24.91178 -23.72081 -22.56021 -22.08781 -21.57394 -20.95652 -19.84800 -19.15612 -18.64340 -17.31541 -17.23080 -17.22269 -16.78413 -16.72892 -16.44393 -16.08095 -15.78776 -15.64318 -15.49349 -15.19561 -14.78010 -14.58385 -14.32083 -14.18295 -14.09130 -14.01131 -13.81012 -13.41311 -13.17178 -13.15386 -13.07033 -12.81275 -12.57912 -12.47187 -12.31645 -12.14190 -12.03149 -11.94109 -11.75245 -11.30899 -11.01709 -10.93587 -10.85825 -10.10525 -10.03935 -9.83840 -9.09723 -8.51370 -6.24513 0.48805 0.54127 1.32082 1.35655 1.51504 1.62288 1.67424 2.05750 2.27065 2.46644 2.80931 3.02640 3.17374 3.62086 3.84217 3.91630 4.00806 4.03748 4.07137 4.13465 4.16217 4.18057 4.36115 4.44213 4.53959 4.66551 4.67125 4.75636 4.77022 4.82497 4.87927 4.89326 4.95677 4.99334 5.15585 5.21768 5.24530 5.33209 5.34559 5.45765 5.50066 5.53630 5.70307 5.78183 5.87821 6.18780 6.52931 6.59926 6.82766 7.23090 7.27005 7.55675 8.59912 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.001491 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.447884 B =18777.181907 C =19200.202240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.115 3.885 4 N -0.722 5.722 5 C 0.512 3.488 6 O -0.584 6.584 7 C -0.117 4.117 8 C -0.121 4.121 9 C 0.516 3.484 10 O -0.580 6.580 11 N -0.718 5.718 12 C 0.182 3.818 13 C -0.175 4.175 14 C -0.051 4.051 15 C -0.239 4.239 16 C 0.128 3.872 17 O -0.242 6.242 18 C -0.401 4.401 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.921 5.921 22 Si 0.970 3.030 23 H -0.266 1.266 24 H -0.269 1.269 25 H -0.261 1.261 26 C -0.192 4.192 27 C -0.045 4.045 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.417 0.583 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.411 0.589 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.134 0.866 44 H 0.109 0.891 45 H 0.285 0.715 46 H 0.131 0.869 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.812 -26.735 -7.441 34.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.009 4.009 4 N -0.374 5.374 5 C 0.300 3.700 6 O -0.464 6.464 7 C -0.157 4.157 8 C -0.161 4.161 9 C 0.304 3.696 10 O -0.460 6.460 11 N -0.369 5.369 12 C 0.059 3.941 13 C -0.176 4.176 14 C -0.069 4.069 15 C -0.258 4.258 16 C 0.078 3.922 17 O -0.149 6.149 18 C -0.477 4.477 19 H 0.100 0.900 20 C -0.187 4.187 21 N -0.562 5.562 22 Si 0.792 3.208 23 H -0.191 1.191 24 H -0.193 1.193 25 H -0.186 1.186 26 C -0.211 4.211 27 C -0.064 4.064 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.254 0.746 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.247 0.753 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.152 0.848 44 H 0.127 0.873 45 H 0.095 0.905 46 H 0.149 0.851 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -19.690 -26.417 -7.498 33.790 hybrid contribution 0.396 1.075 0.263 1.175 sum -19.294 -25.342 -7.235 32.662 Atomic orbital electron populations 1.21702 0.94401 1.02733 1.02146 1.21687 0.97058 0.94067 1.03683 1.21446 0.79364 0.98678 1.01382 1.45980 1.07655 1.08966 1.74810 1.20996 0.90815 0.83466 0.74753 1.90710 1.71500 1.32815 1.51413 1.21322 0.89682 0.97857 1.06825 1.21342 0.89719 0.98577 1.06445 1.20935 0.90695 0.83148 0.74856 1.90681 1.71385 1.32252 1.51725 1.46201 1.07177 1.09173 1.74389 1.19914 0.79625 0.91857 1.02687 1.19587 1.08508 0.96627 0.92867 1.20929 0.95027 0.92399 0.98568 1.21271 1.09430 0.97541 0.97552 1.19751 0.93195 0.83898 0.95307 1.83518 1.74873 1.24027 1.32529 1.20719 1.41997 1.01914 0.83078 0.89997 1.25277 0.95195 0.96936 1.01283 1.69729 1.42541 1.18343 1.25561 0.85226 0.78584 0.78290 0.78702 1.19075 1.19341 1.18557 1.20524 1.08944 0.96377 0.95289 1.20962 0.94810 0.92080 0.98522 0.92644 0.92591 0.91207 0.90282 0.90353 0.92708 0.92620 0.74617 0.87005 0.87195 0.87804 0.87513 0.75265 0.90360 0.91286 0.84814 0.87328 0.90543 0.85140 0.82773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 71.98 0.71 -0.12 16 2 C -0.13 -0.67 6.05 30.60 0.19 -0.49 16 3 C 0.11 1.25 5.67 86.38 0.49 1.74 16 4 N -0.72 -7.64 5.56 -463.06 -2.57 -10.22 16 5 C 0.51 8.37 7.83 87.66 0.69 9.06 16 6 O -0.58 -14.52 15.98 -3.02 -0.05 -14.57 16 7 C -0.12 -1.55 4.99 29.85 0.15 -1.40 16 8 C -0.12 -1.89 4.99 29.85 0.15 -1.74 16 9 C 0.52 10.41 7.83 87.66 0.69 11.09 16 10 O -0.58 -15.21 15.98 -3.03 -0.05 -15.26 16 11 N -0.72 -13.98 5.55 -466.80 -2.59 -16.57 16 12 C 0.18 4.02 5.80 85.63 0.50 4.52 16 13 C -0.17 -4.70 5.25 -19.83 -0.10 -4.80 16 14 C -0.05 -1.62 9.69 22.25 0.22 -1.40 16 15 C -0.24 -9.94 9.17 22.39 0.21 -9.74 16 16 C 0.13 5.71 6.65 22.58 0.15 5.86 16 17 O -0.24 -12.79 8.59 -22.72 -0.20 -12.99 16 18 C -0.40 -23.17 9.95 67.92 0.68 -22.50 16 19 H 0.08 4.96 5.44 -2.91 -0.02 4.94 16 20 C 0.01 0.68 5.49 84.83 0.47 1.14 16 21 N -0.92 -54.41 13.96 21.61 0.30 -54.11 16 22 Si 0.97 44.67 28.62 68.60 1.96 46.63 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 26 C -0.19 -6.80 9.99 22.39 0.22 -6.58 16 27 C -0.05 -1.25 9.69 22.25 0.22 -1.03 16 28 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.42 1.90 8.47 -92.71 -0.79 1.12 16 36 H 0.11 1.29 8.10 -2.39 -0.02 1.27 16 37 H 0.11 1.31 8.10 -2.39 -0.02 1.29 16 38 H 0.10 1.62 8.10 -2.39 -0.02 1.60 16 39 H 0.11 1.59 8.10 -2.39 -0.02 1.57 16 40 H 0.41 7.04 8.46 -92.71 -0.78 6.26 16 41 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 42 H 0.07 1.59 8.08 -2.38 -0.02 1.57 16 43 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 44 H 0.11 5.05 5.64 -2.91 -0.02 5.04 16 45 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 47 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -73.69 400.56 1.84 -71.85 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -0.57 Total: 21.60 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 5.60 Total: -16.37 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -4.86 Total: -80.90 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.29 Total: -42.82 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.96 Total: 46.63 kcal Total: -73.69 1.84 -71.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264648690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.058 kcal (2) G-P(sol) polarization free energy of solvation -73.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds