Wall clock time and date at job start Tue Mar 31 2020 18:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47568 * 2 1 4 4 N 1.46507 * 109.47360 * 120.00027 * 2 1 3 5 5 C 1.34774 * 119.99752 * 84.99659 * 4 2 1 6 6 O 1.21277 * 120.00336 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99704 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47105 * 180.02562 * 7 5 4 9 9 N 1.46495 * 109.47156 * 179.97438 * 8 7 5 10 10 C 1.34775 * 120.00172 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 9 8 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47264 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47375 * 119.99795 * 22 20 18 25 25 H 1.48506 * 109.47301 * 239.99793 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.08995 * 109.47276 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47365 * 300.00370 * 1 2 3 30 30 H 1.08998 * 109.47237 * 59.99689 * 1 2 3 31 31 H 1.09003 * 109.47365 * 239.99630 * 2 1 3 32 32 H 1.08998 * 109.47609 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47096 * 300.00398 * 3 2 1 34 34 H 1.09003 * 109.47080 * 59.99456 * 3 2 1 35 35 H 0.96998 * 119.99848 * 265.00455 * 4 2 1 36 36 H 1.08998 * 109.47596 * 59.99474 * 7 5 4 37 37 H 1.09005 * 109.46667 * 299.99662 * 7 5 4 38 38 H 1.08998 * 109.47672 * 59.99093 * 8 7 5 39 39 H 1.09005 * 109.46733 * 299.99195 * 8 7 5 40 40 H 0.97005 * 120.00223 * 359.97438 * 9 8 7 41 41 H 1.08998 * 109.46621 * 60.00483 * 12 10 9 42 42 H 1.08996 * 109.47266 * 300.00146 * 12 10 9 43 43 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 44 44 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 47 47 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -2.0322 1.1944 6 8 1.8580 -2.6678 0.2027 7 6 2.6488 -2.7427 2.4250 8 6 2.7010 -4.2485 2.1590 9 7 3.1894 -4.9391 3.3551 10 6 3.3182 -6.2807 3.3533 11 8 3.0302 -6.9162 2.3613 12 6 3.8212 -6.9910 4.5836 13 6 3.8724 -8.4742 4.3215 14 6 5.0214 -9.0443 3.8044 15 6 5.0717 -10.4032 3.5636 16 6 3.9666 -11.1974 3.8409 17 8 4.0132 -12.5336 3.6058 18 6 5.1968 -13.0449 3.2116 19 1 6.0312 -12.3874 3.0173 20 6 5.3427 -14.4149 3.0557 21 7 4.3265 -15.2160 3.2929 22 14 6.9828 -15.1234 2.5102 23 1 7.9568 -14.0203 2.3109 24 1 7.4919 -16.0517 3.5514 25 1 6.8035 -15.8614 1.2341 26 6 2.8121 -10.6210 4.3543 27 6 2.7701 -9.2623 4.5981 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 2.2490 -0.1823 1.9895 36 1 1.9761 -2.5438 3.2592 37 1 3.6481 -2.3826 2.6703 38 1 3.3739 -4.4471 1.3249 39 1 1.7019 -4.6088 1.9135 40 1 3.4201 -4.4308 4.1484 41 1 3.1490 -6.7922 5.4182 42 1 4.8205 -6.6309 4.8280 43 1 5.8806 -8.4262 3.5893 44 1 5.9694 -10.8478 3.1601 45 1 4.4284 -16.1743 3.1834 46 1 1.9496 -11.2353 4.5667 47 1 1.8741 -8.8141 5.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264774107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:17 Heat of formation + Delta-G solvation = -90.193854 kcal Electronic energy + Delta-G solvation = -26843.034611 eV Core-core repulsion = 22798.095689 eV Total energy + Delta-G solvation = -4044.938922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.37606 -39.64553 -38.70488 -36.66284 -36.39759 -35.09905 -32.53113 -32.34499 -31.51509 -30.34761 -30.06192 -27.75661 -26.73595 -25.19389 -24.10587 -21.89670 -21.71368 -21.09655 -20.86843 -19.99460 -17.90874 -17.60592 -17.08465 -16.83035 -16.48493 -16.24271 -15.75313 -15.29792 -14.79807 -14.55360 -14.44252 -14.25937 -13.98472 -13.84009 -13.64788 -13.40303 -13.35485 -13.21896 -12.87663 -12.68564 -12.63355 -12.46799 -12.19336 -11.98098 -11.88992 -11.68200 -11.48781 -11.40481 -11.21680 -10.79150 -10.69119 -10.53719 -10.36556 -10.29324 -9.65253 -9.59484 -9.25205 -9.10982 -8.76199 -8.06897 -7.08700 -6.38499 -3.96806 2.22147 2.30889 2.33402 2.59672 2.84300 3.16281 3.18260 3.24019 3.33596 4.02572 4.20508 4.32398 4.48813 4.57167 4.63105 4.63851 4.71092 4.95995 5.03358 5.04409 5.15766 5.17796 5.25022 5.31084 5.36561 5.40020 5.40228 5.57301 5.60388 5.71342 5.75122 5.80257 5.83751 5.92866 6.02919 6.29525 6.35394 6.49788 6.78247 6.99288 7.00239 7.13104 7.31622 7.44780 7.48429 7.53103 7.79173 7.92082 8.07167 8.38776 9.07409 9.78791 10.79835 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026026 B = 0.001575 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.580478 B =17770.830613 C =18079.777081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.134 3.866 3 C -0.160 4.160 4 N -0.730 5.730 5 C 0.517 3.483 6 O -0.530 6.530 7 C -0.152 4.152 8 C 0.134 3.866 9 N -0.744 5.744 10 C 0.507 3.493 11 O -0.515 6.515 12 C -0.078 4.078 13 C -0.171 4.171 14 C -0.056 4.056 15 C -0.232 4.232 16 C 0.157 3.843 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.192 4.192 27 C -0.059 4.059 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.400 0.600 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.396 0.604 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.126 0.874 45 H 0.269 0.731 46 H 0.116 0.884 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 34.367 1.838 34.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.030 3.970 3 C -0.218 4.218 4 N -0.383 5.383 5 C 0.303 3.697 6 O -0.405 6.405 7 C -0.193 4.193 8 C 0.010 3.990 9 N -0.399 5.399 10 C 0.294 3.706 11 O -0.389 6.389 12 C -0.118 4.118 13 C -0.172 4.172 14 C -0.075 4.075 15 C -0.252 4.252 16 C 0.103 3.897 17 O -0.083 6.083 18 C -0.466 4.466 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.211 4.211 27 C -0.078 4.078 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.234 0.766 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.230 0.770 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.122 0.878 44 H 0.144 0.856 45 H 0.079 0.921 46 H 0.134 0.866 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.240 32.970 0.350 33.131 hybrid contribution 1.037 0.338 0.458 1.183 sum -2.203 33.308 0.808 33.390 Atomic orbital electron populations 1.22189 0.95155 1.02829 1.02115 1.20960 0.94302 0.92835 0.88914 1.22077 1.01741 0.94973 1.03018 1.46132 1.68231 1.07003 1.16923 1.20462 0.77498 0.82225 0.89564 1.90777 1.49009 1.65732 1.35008 1.21825 1.03771 0.96410 0.97274 1.20942 1.01419 0.88438 0.88184 1.46063 1.69848 1.07573 1.16388 1.21074 0.77668 0.81272 0.90598 1.90773 1.47578 1.65594 1.34918 1.20396 1.02409 0.93763 0.95251 1.18642 0.95934 0.92303 1.10342 1.20504 0.96364 0.94193 0.96411 1.21106 1.00322 0.93870 1.09871 1.19390 0.93312 0.85187 0.91804 1.83976 1.34420 1.16060 1.73818 1.21381 0.87977 0.91291 1.45989 0.89036 1.25284 0.99288 0.94961 0.97040 1.70051 1.30251 1.04120 1.45460 0.85647 0.80183 0.79186 0.78401 1.19125 1.20190 1.20187 1.20154 0.97846 0.94687 1.08401 1.20399 0.96398 0.92710 0.98278 0.91934 0.92500 0.91556 0.89330 0.91930 0.90838 0.92049 0.76625 0.88152 0.88164 0.90780 0.90771 0.77003 0.88981 0.89022 0.87836 0.85594 0.92149 0.86552 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.48 37.15 0.35 -0.57 16 2 C 0.13 0.74 3.18 -67.93 -0.22 0.52 16 3 C -0.16 -0.48 9.38 37.16 0.35 -0.13 16 4 N -0.73 -3.72 5.08 -53.81 -0.27 -3.99 16 5 C 0.52 4.21 7.79 -10.99 -0.09 4.12 16 6 O -0.53 -6.95 15.64 5.56 0.09 -6.86 16 7 C -0.15 -0.84 5.81 -27.88 -0.16 -1.00 16 8 C 0.13 1.36 4.96 -4.04 -0.02 1.34 16 9 N -0.74 -7.01 5.56 -60.29 -0.33 -7.35 16 10 C 0.51 7.16 7.82 -10.98 -0.09 7.07 16 11 O -0.52 -10.25 16.03 5.55 0.09 -10.16 16 12 C -0.08 -0.98 5.83 -29.04 -0.17 -1.15 16 13 C -0.17 -3.07 4.38 -104.58 -0.46 -3.52 16 14 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 15 C -0.23 -5.37 9.17 -39.39 -0.36 -5.73 16 16 C 0.16 4.01 6.65 -39.11 -0.26 3.75 16 17 O -0.18 -5.34 9.76 0.05 0.00 -5.34 16 18 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 19 H 0.09 2.47 5.20 -52.49 -0.27 2.19 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -26.00 13.67 55.48 0.76 -25.25 16 22 Si 0.94 21.15 29.55 -169.99 -5.02 16.13 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.19 -4.32 9.99 -39.39 -0.39 -4.71 16 27 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.68 7.58 -51.93 -0.39 0.29 16 32 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.40 0.80 8.60 -40.82 -0.35 0.44 16 36 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 39 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.40 2.10 8.47 -40.82 -0.35 1.76 16 41 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 42 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 43 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.13 2.90 5.64 -52.49 -0.30 2.61 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 47 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 400.92 15.07 6.04 6.04 Total: -1.00 -38.78 400.92 -7.86 -46.65 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.13 Total: 3.17 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -2.08 Total: -13.04 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.15 Total: -36.58 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.18 Total: -22.36 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.78 -7.86 -46.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264774107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.549 kcal (2) G-P(sol) polarization free energy of solvation -38.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds