Wall clock time and date at job start Tue Mar 31 2020 18:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47568 * 2 1 4 4 N 1.46507 * 109.47360 * 120.00027 * 2 1 3 5 5 C 1.34774 * 119.99752 * 84.99659 * 4 2 1 6 6 O 1.21277 * 120.00336 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99704 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47105 * 180.02562 * 7 5 4 9 9 N 1.46495 * 109.47156 * 179.97438 * 8 7 5 10 10 C 1.34775 * 120.00172 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 9 8 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47264 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47375 * 119.99795 * 22 20 18 25 25 H 1.48506 * 109.47301 * 239.99793 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.08995 * 109.47276 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47365 * 300.00370 * 1 2 3 30 30 H 1.08998 * 109.47237 * 59.99689 * 1 2 3 31 31 H 1.09003 * 109.47365 * 239.99630 * 2 1 3 32 32 H 1.08998 * 109.47609 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47096 * 300.00398 * 3 2 1 34 34 H 1.09003 * 109.47080 * 59.99456 * 3 2 1 35 35 H 0.96998 * 119.99848 * 265.00455 * 4 2 1 36 36 H 1.08998 * 109.47596 * 59.99474 * 7 5 4 37 37 H 1.09005 * 109.46667 * 299.99662 * 7 5 4 38 38 H 1.08998 * 109.47672 * 59.99093 * 8 7 5 39 39 H 1.09005 * 109.46733 * 299.99195 * 8 7 5 40 40 H 0.97005 * 120.00223 * 359.97438 * 9 8 7 41 41 H 1.08998 * 109.46621 * 60.00483 * 12 10 9 42 42 H 1.08996 * 109.47266 * 300.00146 * 12 10 9 43 43 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 44 44 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 47 47 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -2.0322 1.1944 6 8 1.8580 -2.6678 0.2027 7 6 2.6488 -2.7427 2.4250 8 6 2.7010 -4.2485 2.1590 9 7 3.1894 -4.9391 3.3551 10 6 3.3182 -6.2807 3.3533 11 8 3.0302 -6.9162 2.3613 12 6 3.8212 -6.9910 4.5836 13 6 3.8724 -8.4742 4.3215 14 6 5.0214 -9.0443 3.8044 15 6 5.0717 -10.4032 3.5636 16 6 3.9666 -11.1974 3.8409 17 8 4.0132 -12.5336 3.6058 18 6 5.1968 -13.0449 3.2116 19 1 6.0312 -12.3874 3.0173 20 6 5.3427 -14.4149 3.0557 21 7 4.3265 -15.2160 3.2929 22 14 6.9828 -15.1234 2.5102 23 1 7.9568 -14.0203 2.3109 24 1 7.4919 -16.0517 3.5514 25 1 6.8035 -15.8614 1.2341 26 6 2.8121 -10.6210 4.3543 27 6 2.7701 -9.2623 4.5981 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 2.2490 -0.1823 1.9895 36 1 1.9761 -2.5438 3.2592 37 1 3.6481 -2.3826 2.6703 38 1 3.3739 -4.4471 1.3249 39 1 1.7019 -4.6088 1.9135 40 1 3.4201 -4.4308 4.1484 41 1 3.1490 -6.7922 5.4182 42 1 4.8205 -6.6309 4.8280 43 1 5.8806 -8.4262 3.5893 44 1 5.9694 -10.8478 3.1601 45 1 4.4284 -16.1743 3.1834 46 1 1.9496 -11.2353 4.5667 47 1 1.8741 -8.8141 5.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264774107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:16 Heat of formation + Delta-G solvation = -120.525023 kcal Electronic energy + Delta-G solvation = -26844.349870 eV Core-core repulsion = 22798.095689 eV Total energy + Delta-G solvation = -4046.254180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17584 -40.85887 -40.27932 -38.23452 -37.12247 -36.07664 -34.39653 -33.24781 -32.72204 -31.77126 -31.17666 -28.23185 -28.10664 -27.05932 -25.00450 -23.62808 -22.55728 -22.17014 -21.56781 -21.14629 -19.83943 -18.85779 -18.30308 -17.88364 -17.13382 -16.91632 -16.84452 -16.50449 -16.28549 -15.89631 -15.74484 -15.49939 -15.24507 -15.06347 -14.75149 -14.57941 -14.53030 -14.37820 -14.08233 -13.79769 -13.59097 -13.23667 -13.07100 -12.98082 -12.83738 -12.78623 -12.46893 -12.43066 -12.30177 -12.25319 -12.23590 -12.09214 -11.92131 -11.17247 -11.07212 -10.86462 -10.72240 -10.15611 -10.04993 -9.75217 -8.89131 -8.47388 -6.15629 0.62541 0.68130 1.33749 1.42496 1.52762 1.62565 1.76491 1.96216 2.17688 2.52357 2.86874 3.19390 3.52506 3.64350 3.89033 3.89144 4.05862 4.07486 4.10251 4.16751 4.19453 4.28777 4.31949 4.52757 4.54163 4.61188 4.73078 4.75263 4.75661 4.82000 4.87324 4.93169 4.99069 5.03913 5.11139 5.15566 5.26097 5.31555 5.31930 5.47774 5.55961 5.57754 5.72479 5.79236 6.03242 6.24911 6.56694 6.69198 6.97127 7.28738 7.42478 7.78820 8.76410 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026026 B = 0.001575 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.580478 B =17770.830613 C =18079.777081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.129 3.871 3 C -0.151 4.151 4 N -0.712 5.712 5 C 0.509 3.491 6 O -0.592 6.592 7 C -0.135 4.135 8 C 0.136 3.864 9 N -0.714 5.714 10 C 0.506 3.494 11 O -0.586 6.586 12 C -0.074 4.074 13 C -0.148 4.148 14 C -0.061 4.061 15 C -0.246 4.246 16 C 0.111 3.889 17 O -0.235 6.235 18 C -0.415 4.415 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.021 2.979 23 H -0.252 1.252 24 H -0.265 1.265 25 H -0.269 1.269 26 C -0.208 4.208 27 C -0.058 4.058 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.419 0.581 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.423 0.577 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.116 0.884 45 H 0.273 0.727 46 H 0.111 0.889 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.116 39.432 4.125 39.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 C -0.209 4.209 4 N -0.365 5.365 5 C 0.296 3.704 6 O -0.472 6.472 7 C -0.175 4.175 8 C 0.011 3.989 9 N -0.369 5.369 10 C 0.294 3.706 11 O -0.465 6.465 12 C -0.113 4.113 13 C -0.149 4.149 14 C -0.079 4.079 15 C -0.265 4.265 16 C 0.061 3.939 17 O -0.142 6.142 18 C -0.491 4.491 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.840 3.160 23 H -0.176 1.176 24 H -0.189 1.189 25 H -0.194 1.194 26 C -0.227 4.227 27 C -0.076 4.076 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.257 0.743 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.262 0.738 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.134 0.866 45 H 0.082 0.918 46 H 0.129 0.871 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.749 38.199 2.729 38.336 hybrid contribution 0.440 -0.811 -0.187 0.942 sum -1.309 37.388 2.542 37.497 Atomic orbital electron populations 1.22152 0.95225 1.01137 1.03382 1.20986 0.94278 0.94200 0.88058 1.22013 1.01825 0.92877 1.04174 1.46007 1.66761 1.06212 1.17537 1.21014 0.76752 0.82988 0.89611 1.90766 1.51914 1.67132 1.37416 1.21754 1.06641 0.92310 0.96758 1.20790 0.98819 0.91695 0.87590 1.45721 1.67789 1.06276 1.17092 1.21332 0.76814 0.82458 0.89988 1.90782 1.50969 1.67303 1.37434 1.20535 1.06046 0.89120 0.95617 1.19326 0.94126 0.95631 1.05775 1.20957 0.98502 0.92869 0.95547 1.21236 0.99346 0.95585 1.10309 1.19955 0.95470 0.84465 0.94042 1.83934 1.35224 1.18336 1.76726 1.21873 0.88416 0.92188 1.46591 0.88270 1.26625 1.03792 0.94893 0.96819 1.70196 1.33142 1.04577 1.48094 0.84503 0.74792 0.78540 0.78158 1.17562 1.18941 1.19427 1.20454 0.96958 0.96595 1.08732 1.20906 0.98387 0.91174 0.97153 0.95009 0.90819 0.90744 0.92326 0.91678 0.90365 0.90230 0.74295 0.84519 0.84507 0.93936 0.93908 0.73800 0.84630 0.84877 0.84287 0.86571 0.91840 0.87058 0.83436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.48 71.98 0.68 -0.99 16 2 C 0.13 1.29 3.18 44.99 0.14 1.43 16 3 C -0.15 -0.52 9.38 71.98 0.68 0.16 16 4 N -0.71 -5.63 5.08 -442.54 -2.25 -7.87 16 5 C 0.51 7.60 7.79 87.66 0.68 8.28 16 6 O -0.59 -16.22 15.64 -3.02 -0.05 -16.27 16 7 C -0.13 -0.97 5.81 29.85 0.17 -0.80 16 8 C 0.14 2.53 4.96 86.38 0.43 2.96 16 9 N -0.71 -10.44 5.56 -463.05 -2.57 -13.01 16 10 C 0.51 12.47 7.82 87.66 0.69 13.15 16 11 O -0.59 -22.78 16.03 -3.05 -0.05 -22.83 16 12 C -0.07 -1.42 5.83 29.10 0.17 -1.25 16 13 C -0.15 -4.81 4.38 -19.84 -0.09 -4.90 16 14 C -0.06 -2.27 9.69 22.25 0.22 -2.05 16 15 C -0.25 -11.65 9.17 22.39 0.21 -11.45 16 16 C 0.11 5.98 6.65 22.58 0.15 6.13 16 17 O -0.24 -15.10 9.76 -22.72 -0.22 -15.33 16 18 C -0.41 -25.52 9.49 67.92 0.64 -24.87 16 19 H 0.10 5.65 5.20 -2.91 -0.02 5.64 16 20 C -0.02 -1.44 5.49 84.84 0.47 -0.97 16 21 N -0.92 -58.78 13.67 21.62 0.30 -58.49 16 22 Si 1.02 44.80 29.55 68.60 2.03 46.83 16 23 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 C -0.21 -9.68 9.99 22.39 0.22 -9.46 16 27 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 28 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.95 7.58 -2.39 -0.02 0.93 16 32 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.42 -0.02 8.60 -92.71 -0.80 -0.82 16 36 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.14 0.08 8.14 -2.38 -0.02 0.06 16 38 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 39 H 0.04 1.08 8.10 -2.38 -0.02 1.06 16 40 H 0.42 1.74 8.47 -92.70 -0.79 0.96 16 41 H 0.14 1.59 8.08 -2.39 -0.02 1.57 16 42 H 0.13 1.62 8.08 -2.39 -0.02 1.60 16 43 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 44 H 0.12 5.60 5.64 -2.91 -0.02 5.58 16 45 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 46 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 47 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -98.14 400.92 2.28 -95.86 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -0.59 Total: 17.63 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 5.68 Total: -26.53 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -4.52 Total: -79.37 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -0.32 Total: -54.42 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -98.14 2.28 -95.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264774107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.661 kcal (2) G-P(sol) polarization free energy of solvation -98.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds