Wall clock time and date at job start Tue Mar 31 2020 17:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47153 * 2 1 4 4 H 1.09002 * 109.47560 * 54.99420 * 3 2 1 5 5 C 1.53005 * 109.46722 * 294.99491 * 3 2 1 6 6 C 1.52999 * 109.47126 * 174.99567 * 3 2 1 7 7 N 1.46497 * 109.47102 * 184.99610 * 6 3 2 8 8 C 1.46498 * 119.99812 * 90.00255 * 7 6 3 9 9 C 1.34777 * 120.00030 * 270.00068 * 7 6 3 10 10 O 1.21356 * 120.00026 * 5.12621 * 9 7 6 11 11 C 1.49352 * 119.99951 * 185.12484 * 9 7 6 12 12 O 1.21378 * 120.00320 * 5.78425 * 11 9 7 13 13 N 1.34780 * 120.00186 * 185.78565 * 11 9 7 14 14 C 1.39725 * 120.00077 * 175.87788 * 13 11 9 15 15 C 1.39017 * 120.03928 * 215.25881 * 14 13 11 16 16 C 1.38148 * 120.05866 * 179.74952 * 15 14 13 17 17 C 1.38176 * 120.14307 * 0.54860 * 16 15 14 18 18 C 1.38922 * 120.08404 * 359.70557 * 17 16 15 19 19 O 1.35752 * 120.03078 * 180.02562 * 18 17 16 20 20 C 1.34826 * 117.00133 * 6.43818 * 19 18 17 21 21 H 1.08000 * 120.00428 * 5.68697 * 20 19 18 22 22 C 1.38652 * 120.00036 * 185.67495 * 20 19 18 23 23 N 1.31560 * 120.00080 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99762 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46975 * 90.00513 * 24 22 20 26 26 H 1.48506 * 109.47099 * 210.00276 * 24 22 20 27 27 H 1.48497 * 109.47295 * 330.00141 * 24 22 20 28 28 C 1.38755 * 119.93755 * 0.02562 * 18 17 16 29 29 H 1.09005 * 109.46530 * 60.00429 * 1 2 3 30 30 H 1.08996 * 109.46849 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46899 * 300.00587 * 1 2 3 32 32 H 1.08992 * 109.47339 * 239.99702 * 2 1 3 33 33 H 1.09005 * 109.46530 * 119.99571 * 2 1 3 34 34 H 1.09000 * 109.47070 * 299.99692 * 5 3 2 35 35 H 1.09000 * 109.47151 * 60.00713 * 5 3 2 36 36 H 1.09005 * 109.46711 * 179.97438 * 5 3 2 37 37 H 1.08994 * 109.46929 * 304.99768 * 6 3 2 38 38 H 1.09008 * 109.46676 * 64.99916 * 6 3 2 39 39 H 1.08993 * 109.47421 * 95.95869 * 8 7 6 40 40 H 1.09002 * 109.47081 * 215.95276 * 8 7 6 41 41 H 1.09004 * 109.47342 * 335.95449 * 8 7 6 42 42 H 0.96996 * 119.99930 * 355.87514 * 13 11 9 43 43 H 1.07991 * 119.97063 * 0.02562 * 15 14 13 44 44 H 1.07993 * 119.92748 * 180.27779 * 16 15 14 45 45 H 1.08001 * 119.96142 * 179.72714 * 17 16 15 46 46 H 0.96999 * 119.99731 * 179.97438 * 23 22 20 47 47 H 1.07997 * 120.07127 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9817 0.8417 5 6 1.6353 2.1264 -1.3075 6 6 3.5649 1.4443 0.1258 7 7 4.0433 2.8238 0.2458 8 6 4.1785 3.4397 1.5681 9 6 4.3591 3.5261 -0.8603 10 8 4.1598 3.0503 -1.9587 11 6 4.9544 4.8901 -0.7342 12 8 5.2511 5.3240 0.3599 13 7 5.1622 5.6392 -1.8352 14 6 5.6383 6.9469 -1.7108 15 6 5.2040 7.9322 -2.5902 16 6 5.6706 9.2264 -2.4644 17 6 6.5783 9.5434 -1.4720 18 6 7.0203 8.5623 -0.5933 19 8 7.9118 8.8750 0.3815 20 6 8.2266 10.1778 0.5281 21 1 7.7080 10.9273 -0.0513 22 6 9.2161 10.5555 1.4230 23 7 9.8481 9.6426 2.1286 24 14 9.6518 12.3605 1.6265 25 1 8.8071 12.9564 2.6926 26 1 11.0833 12.4850 2.0016 27 1 9.4114 13.0751 0.3472 28 6 6.5497 7.2625 -0.7131 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0701 1.5874 -2.1492 35 1 0.5490 2.1252 -1.3971 36 1 1.9983 3.1543 -1.3073 37 1 3.8570 0.8801 1.0114 38 1 4.0030 0.9835 -0.7596 39 1 5.2089 3.3437 1.9101 40 1 3.9132 4.4952 1.5061 41 1 3.5138 2.9388 2.2720 42 1 4.9813 5.2704 -2.7139 43 1 4.4980 7.6866 -3.3695 44 1 5.3283 9.9911 -3.1458 45 1 6.9445 10.5552 -1.3791 46 1 10.5406 9.9068 2.7544 47 1 6.8916 6.4982 -0.0309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264834987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:22 Heat of formation + Delta-G solvation = -64.525333 kcal Electronic energy + Delta-G solvation = -28532.009887 eV Core-core repulsion = 24488.184036 eV Total energy + Delta-G solvation = -4043.825852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08597 -39.50693 -38.46191 -37.14617 -36.67633 -35.22418 -33.97878 -32.26906 -30.42015 -29.64337 -28.66871 -27.59704 -26.92304 -25.41732 -24.85049 -23.20162 -21.92134 -21.14746 -20.28691 -19.71829 -18.36360 -17.81832 -17.07542 -16.96677 -16.41931 -15.67775 -15.34802 -15.24048 -15.11020 -14.97687 -14.34592 -14.28136 -14.10848 -13.66234 -13.58693 -13.52366 -13.19361 -12.94259 -12.84127 -12.66691 -12.44242 -12.23069 -12.13950 -11.75828 -11.62022 -11.59459 -11.45812 -11.22640 -11.09922 -11.03520 -10.92385 -10.85214 -10.73009 -10.47270 -9.86318 -9.54853 -9.13926 -8.92865 -8.83159 -7.78366 -7.23611 -6.44538 -4.03492 1.28595 2.09320 2.29542 2.33704 3.12827 3.13789 3.18896 3.23161 3.42426 3.96585 4.30398 4.46567 4.52966 4.56096 4.61962 4.90679 5.05873 5.10554 5.16910 5.20402 5.27507 5.34989 5.38534 5.43179 5.57388 5.59463 5.69499 5.73496 5.76460 5.77889 5.82966 5.86875 6.04823 6.06733 6.13155 6.18473 6.22778 6.31894 6.56807 6.70551 6.90283 6.97804 7.04121 7.30339 7.38801 7.43785 7.67401 7.75882 7.99922 8.09206 9.00459 9.70838 10.73229 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.002299 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.723780 B =12177.234148 C =13043.896162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.109 4.109 4 H 0.072 0.928 5 C -0.140 4.140 6 C 0.117 3.883 7 N -0.586 5.586 8 C 0.075 3.925 9 C 0.510 3.490 10 O -0.518 6.518 11 C 0.497 3.503 12 O -0.486 6.486 13 N -0.638 5.638 14 C 0.168 3.832 15 C -0.229 4.229 16 C -0.058 4.058 17 C -0.241 4.241 18 C 0.165 3.835 19 O -0.172 6.172 20 C -0.391 4.391 21 H 0.093 0.907 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.273 1.273 26 H -0.278 1.278 27 H -0.267 1.267 28 C -0.184 4.184 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.417 0.583 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.129 0.871 46 H 0.270 0.730 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.187 -15.448 -4.715 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.128 4.128 4 H 0.090 0.910 5 C -0.197 4.197 6 C -0.005 4.005 7 N -0.319 5.319 8 C -0.067 4.067 9 C 0.293 3.707 10 O -0.394 6.394 11 C 0.278 3.722 12 O -0.359 6.359 13 N -0.284 5.284 14 C 0.075 3.925 15 C -0.250 4.250 16 C -0.077 4.077 17 C -0.260 4.260 18 C 0.110 3.890 19 O -0.075 6.075 20 C -0.467 4.467 21 H 0.110 0.890 22 C -0.166 4.166 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.205 4.205 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.254 0.746 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.147 0.853 46 H 0.080 0.920 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.773 -15.579 -4.121 21.862 hybrid contribution 0.129 0.777 -0.272 0.834 sum -14.643 -14.802 -4.393 21.280 Atomic orbital electron populations 1.21801 0.95646 1.01509 1.02048 1.21502 0.96201 0.95664 1.02111 1.21598 0.94963 0.96767 0.99488 0.90968 1.21864 1.00352 1.00879 0.96628 1.21732 0.94130 0.81239 1.03429 1.47672 1.63248 1.13899 1.07092 1.22223 1.02496 1.00262 0.81769 1.20066 0.79494 0.86390 0.84783 1.90746 1.52570 1.70418 1.25679 1.20136 0.80622 0.86276 0.85125 1.90826 1.47866 1.71612 1.25609 1.43022 1.63184 1.12535 1.09658 1.17171 0.95197 0.82321 0.97763 1.20304 1.07577 0.92926 1.04233 1.20520 0.95592 0.94934 0.96666 1.21223 1.04575 1.00778 0.99463 1.19124 0.89549 0.92397 0.87882 1.84003 1.51032 1.28316 1.44181 1.21334 1.20449 0.80092 1.24828 0.89003 1.25312 0.95314 1.00233 0.95713 1.70050 1.22780 1.33367 1.23240 0.85702 0.78143 0.80439 0.79073 1.19864 1.20278 1.19176 1.20131 1.01381 0.96071 1.02956 0.92372 0.92822 0.92807 0.91694 0.91925 0.92051 0.93111 0.92871 0.89927 0.89535 0.91435 0.88743 0.91481 0.74614 0.87127 0.86847 0.85331 0.91994 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.67 37.16 0.36 -0.57 16 2 C -0.12 -0.74 5.40 -26.73 -0.14 -0.89 16 3 C -0.11 -0.87 2.59 -90.62 -0.24 -1.10 16 4 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 5 C -0.14 -1.35 7.62 37.16 0.28 -1.06 16 6 C 0.12 1.02 4.96 -4.04 -0.02 1.00 16 7 N -0.59 -6.55 2.76 -182.13 -0.50 -7.05 16 8 C 0.07 0.79 9.22 59.85 0.55 1.34 16 9 C 0.51 6.89 6.48 -11.63 -0.08 6.82 16 10 O -0.52 -7.33 13.90 5.49 0.08 -7.25 16 11 C 0.50 7.86 7.54 -11.63 -0.09 7.77 16 12 O -0.49 -8.89 10.85 5.47 0.06 -8.83 16 13 N -0.64 -9.90 5.32 -10.31 -0.05 -9.95 16 14 C 0.17 3.14 6.28 -83.77 -0.53 2.61 16 15 C -0.23 -3.92 9.97 -39.33 -0.39 -4.31 16 16 C -0.06 -1.05 10.03 -39.64 -0.40 -1.44 16 17 C -0.24 -5.20 9.13 -39.35 -0.36 -5.56 16 18 C 0.17 4.08 6.64 -39.14 -0.26 3.82 16 19 O -0.17 -4.99 9.75 0.05 0.00 -4.99 16 20 C -0.39 -10.95 9.43 30.89 0.29 -10.65 16 21 H 0.09 2.36 5.31 -52.49 -0.28 2.08 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 23 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16 24 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 28 C -0.18 -4.13 8.63 -39.19 -0.34 -4.47 16 29 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.63 7.93 -51.93 -0.41 0.22 16 35 H 0.05 0.43 6.57 -51.93 -0.34 0.09 16 36 H 0.05 0.62 5.96 -51.93 -0.31 0.31 16 37 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 38 H 0.09 0.82 7.50 -51.92 -0.39 0.43 16 39 H 0.07 0.76 8.09 -51.93 -0.42 0.33 16 40 H 0.09 1.19 5.98 -51.93 -0.31 0.88 16 41 H 0.07 0.52 8.03 -51.93 -0.42 0.10 16 42 H 0.42 5.38 8.30 -40.82 -0.34 5.04 16 43 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 44 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 45 H 0.13 2.76 5.72 -52.49 -0.30 2.46 16 46 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.13 3.15 6.27 -52.49 -0.33 2.82 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -32.08 381.64 -7.08 -39.17 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.70 Total: 8.03 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.45 Total: -5.74 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.20 Total: -41.60 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.14 Total: -21.08 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.08 -7.08 -39.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264834987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.360 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds