Wall clock time and date at job start Tue Mar 31 2020 17:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47153 * 2 1 4 4 H 1.09002 * 109.47560 * 54.99420 * 3 2 1 5 5 C 1.53005 * 109.46722 * 294.99491 * 3 2 1 6 6 C 1.52999 * 109.47126 * 174.99567 * 3 2 1 7 7 N 1.46497 * 109.47102 * 184.99610 * 6 3 2 8 8 C 1.46498 * 119.99812 * 90.00255 * 7 6 3 9 9 C 1.34777 * 120.00030 * 270.00068 * 7 6 3 10 10 O 1.21356 * 120.00026 * 5.12621 * 9 7 6 11 11 C 1.49352 * 119.99951 * 185.12484 * 9 7 6 12 12 O 1.21378 * 120.00320 * 5.78425 * 11 9 7 13 13 N 1.34780 * 120.00186 * 185.78565 * 11 9 7 14 14 C 1.39725 * 120.00077 * 175.87788 * 13 11 9 15 15 C 1.39017 * 120.03928 * 215.25881 * 14 13 11 16 16 C 1.38148 * 120.05866 * 179.74952 * 15 14 13 17 17 C 1.38176 * 120.14307 * 0.54860 * 16 15 14 18 18 C 1.38922 * 120.08404 * 359.70557 * 17 16 15 19 19 O 1.35752 * 120.03078 * 180.02562 * 18 17 16 20 20 C 1.34826 * 117.00133 * 6.43818 * 19 18 17 21 21 H 1.08000 * 120.00428 * 5.68697 * 20 19 18 22 22 C 1.38652 * 120.00036 * 185.67495 * 20 19 18 23 23 N 1.31560 * 120.00080 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99762 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46975 * 90.00513 * 24 22 20 26 26 H 1.48506 * 109.47099 * 210.00276 * 24 22 20 27 27 H 1.48497 * 109.47295 * 330.00141 * 24 22 20 28 28 C 1.38755 * 119.93755 * 0.02562 * 18 17 16 29 29 H 1.09005 * 109.46530 * 60.00429 * 1 2 3 30 30 H 1.08996 * 109.46849 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46899 * 300.00587 * 1 2 3 32 32 H 1.08992 * 109.47339 * 239.99702 * 2 1 3 33 33 H 1.09005 * 109.46530 * 119.99571 * 2 1 3 34 34 H 1.09000 * 109.47070 * 299.99692 * 5 3 2 35 35 H 1.09000 * 109.47151 * 60.00713 * 5 3 2 36 36 H 1.09005 * 109.46711 * 179.97438 * 5 3 2 37 37 H 1.08994 * 109.46929 * 304.99768 * 6 3 2 38 38 H 1.09008 * 109.46676 * 64.99916 * 6 3 2 39 39 H 1.08993 * 109.47421 * 95.95869 * 8 7 6 40 40 H 1.09002 * 109.47081 * 215.95276 * 8 7 6 41 41 H 1.09004 * 109.47342 * 335.95449 * 8 7 6 42 42 H 0.96996 * 119.99930 * 355.87514 * 13 11 9 43 43 H 1.07991 * 119.97063 * 0.02562 * 15 14 13 44 44 H 1.07993 * 119.92748 * 180.27779 * 16 15 14 45 45 H 1.08001 * 119.96142 * 179.72714 * 17 16 15 46 46 H 0.96999 * 119.99731 * 179.97438 * 23 22 20 47 47 H 1.07997 * 120.07127 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9817 0.8417 5 6 1.6353 2.1264 -1.3075 6 6 3.5649 1.4443 0.1258 7 7 4.0433 2.8238 0.2458 8 6 4.1785 3.4397 1.5681 9 6 4.3591 3.5261 -0.8603 10 8 4.1598 3.0503 -1.9587 11 6 4.9544 4.8901 -0.7342 12 8 5.2511 5.3240 0.3599 13 7 5.1622 5.6392 -1.8352 14 6 5.6383 6.9469 -1.7108 15 6 5.2040 7.9322 -2.5902 16 6 5.6706 9.2264 -2.4644 17 6 6.5783 9.5434 -1.4720 18 6 7.0203 8.5623 -0.5933 19 8 7.9118 8.8750 0.3815 20 6 8.2266 10.1778 0.5281 21 1 7.7080 10.9273 -0.0513 22 6 9.2161 10.5555 1.4230 23 7 9.8481 9.6426 2.1286 24 14 9.6518 12.3605 1.6265 25 1 8.8071 12.9564 2.6926 26 1 11.0833 12.4850 2.0016 27 1 9.4114 13.0751 0.3472 28 6 6.5497 7.2625 -0.7131 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0701 1.5874 -2.1492 35 1 0.5490 2.1252 -1.3971 36 1 1.9983 3.1543 -1.3073 37 1 3.8570 0.8801 1.0114 38 1 4.0030 0.9835 -0.7596 39 1 5.2089 3.3437 1.9101 40 1 3.9132 4.4952 1.5061 41 1 3.5138 2.9388 2.2720 42 1 4.9813 5.2704 -2.7139 43 1 4.4980 7.6866 -3.3695 44 1 5.3283 9.9911 -3.1458 45 1 6.9445 10.5552 -1.3791 46 1 10.5406 9.9068 2.7544 47 1 6.8916 6.4982 -0.0309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264834987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:21 Heat of formation + Delta-G solvation = -85.237492 kcal Electronic energy + Delta-G solvation = -28532.908034 eV Core-core repulsion = 24488.184036 eV Total energy + Delta-G solvation = -4044.723998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.30228 -40.92691 -39.97379 -38.31918 -37.98884 -36.23096 -35.31047 -34.25687 -31.36482 -30.98629 -30.25179 -28.40446 -27.94170 -27.33890 -25.90543 -24.25385 -23.38490 -22.65133 -21.17437 -20.73241 -20.03509 -19.24640 -18.66453 -18.11570 -17.49315 -17.03987 -16.78634 -16.59654 -16.29106 -15.96479 -15.89627 -15.60455 -15.49787 -15.24269 -14.72145 -14.41213 -14.29604 -14.23039 -14.14260 -13.74380 -13.57792 -13.43560 -13.23968 -12.97477 -12.84383 -12.81541 -12.69256 -12.47855 -12.32978 -12.16934 -12.11973 -11.94800 -11.56597 -11.46100 -11.41513 -11.24604 -10.77529 -10.47836 -9.85255 -9.40693 -8.94339 -8.46363 -6.15426 -0.00971 0.60983 0.69285 1.16551 1.36103 1.45937 1.54205 1.99730 2.17260 2.33508 2.81173 3.08628 3.17584 3.54379 3.81819 3.89192 3.98595 4.11104 4.26759 4.34310 4.35792 4.37962 4.52822 4.54707 4.60944 4.64127 4.69665 4.73321 4.78667 4.84285 4.91062 5.02246 5.06867 5.10743 5.13739 5.20442 5.22747 5.26729 5.35555 5.36677 5.49391 5.52023 5.60403 5.71081 5.83687 6.02078 6.09054 6.15227 6.60260 6.83152 6.97534 7.78586 8.77060 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.002299 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.723780 B =12177.234148 C =13043.896162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.075 0.925 5 C -0.137 4.137 6 C 0.113 3.887 7 N -0.577 5.577 8 C 0.076 3.924 9 C 0.514 3.486 10 O -0.525 6.525 11 C 0.493 3.507 12 O -0.515 6.515 13 N -0.630 5.630 14 C 0.176 3.824 15 C -0.200 4.200 16 C -0.047 4.047 17 C -0.248 4.248 18 C 0.128 3.872 19 O -0.231 6.231 20 C -0.412 4.412 21 H 0.106 0.894 22 C -0.026 4.026 23 N -0.922 5.922 24 Si 1.022 2.978 25 H -0.264 1.264 26 H -0.273 1.273 27 H -0.249 1.249 28 C -0.206 4.206 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.030 0.970 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.432 0.568 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.126 0.874 46 H 0.272 0.728 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.764 -15.722 -6.602 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.122 4.122 4 H 0.093 0.907 5 C -0.194 4.194 6 C -0.008 4.008 7 N -0.310 5.310 8 C -0.066 4.066 9 C 0.295 3.705 10 O -0.402 6.402 11 C 0.275 3.725 12 O -0.390 6.390 13 N -0.277 5.277 14 C 0.082 3.918 15 C -0.221 4.221 16 C -0.066 4.066 17 C -0.268 4.268 18 C 0.076 3.924 19 O -0.138 6.138 20 C -0.488 4.488 21 H 0.123 0.877 22 C -0.223 4.223 23 N -0.560 5.560 24 Si 0.841 3.159 25 H -0.189 1.189 26 H -0.197 1.197 27 H -0.172 1.172 28 C -0.227 4.227 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.128 0.872 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.272 0.728 43 H 0.178 0.822 44 H 0.179 0.821 45 H 0.144 0.856 46 H 0.081 0.919 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.412 -15.907 -6.063 24.351 hybrid contribution 0.670 0.635 0.123 0.931 sum -16.742 -15.273 -5.939 23.427 Atomic orbital electron populations 1.21803 0.95398 1.02016 1.01819 1.21473 0.96347 0.94376 1.02826 1.21563 0.94237 0.97854 0.98595 0.90664 1.21819 1.00797 0.99485 0.97288 1.21993 0.94649 0.79624 1.04529 1.47787 1.61964 1.14667 1.06541 1.22198 1.02808 0.99449 0.82107 1.19607 0.79924 0.85462 0.85460 1.90745 1.53301 1.70245 1.25936 1.20722 0.79943 0.87166 0.84629 1.90839 1.48843 1.72481 1.26798 1.42971 1.62689 1.11511 1.10577 1.17290 0.93755 0.84181 0.96597 1.20898 1.05975 0.91770 1.03425 1.21032 0.93472 0.96499 0.95569 1.21380 1.05477 0.99946 0.99987 1.19632 0.89976 0.94083 0.88675 1.83965 1.53726 1.28970 1.47094 1.21870 1.20987 0.80494 1.25433 0.87682 1.26676 0.94889 1.05747 0.95021 1.70212 1.24412 1.36232 1.25125 0.84544 0.77903 0.73654 0.79817 1.18888 1.19743 1.17220 1.20134 1.03192 0.95036 1.04346 0.92958 0.91993 0.92687 0.91730 0.90483 0.92958 0.92253 0.95098 0.87186 0.90131 0.92329 0.91036 0.87933 0.72764 0.82219 0.82100 0.85640 0.91878 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.67 71.98 0.70 -0.82 16 2 C -0.11 -1.14 5.40 30.60 0.17 -0.97 16 3 C -0.10 -1.42 2.59 -10.79 -0.03 -1.45 16 4 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 5 C -0.14 -2.44 7.62 71.98 0.55 -1.89 16 6 C 0.11 1.73 4.96 86.38 0.43 2.16 16 7 N -0.58 -12.33 2.76 -848.48 -2.34 -14.67 16 8 C 0.08 1.57 9.22 127.77 1.18 2.75 16 9 C 0.51 13.60 6.48 87.24 0.56 14.16 16 10 O -0.52 -14.30 13.90 -3.26 -0.05 -14.35 16 11 C 0.49 15.68 7.54 87.24 0.66 16.34 16 12 O -0.51 -19.72 10.85 -3.33 -0.04 -19.75 16 13 N -0.63 -18.86 5.32 -304.88 -1.62 -20.49 16 14 C 0.18 6.36 6.28 38.20 0.24 6.60 16 15 C -0.20 -6.06 9.97 22.44 0.22 -5.83 16 16 C -0.05 -1.53 10.03 22.23 0.22 -1.31 16 17 C -0.25 -10.68 9.13 22.42 0.20 -10.47 16 18 C 0.13 6.60 6.64 22.56 0.15 6.75 16 19 O -0.23 -14.40 9.75 -22.73 -0.22 -14.62 16 20 C -0.41 -24.30 9.43 67.92 0.64 -23.65 16 21 H 0.11 5.60 5.31 -2.91 -0.02 5.58 16 22 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 23 N -0.92 -57.79 13.67 21.61 0.30 -57.49 16 24 Si 1.02 43.14 29.55 68.60 2.03 45.17 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 28 C -0.21 -9.64 8.63 22.52 0.19 -9.44 16 29 H 0.05 0.58 6.57 -2.38 -0.02 0.56 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.05 1.01 7.93 -2.39 -0.02 1.00 16 35 H 0.06 0.93 6.57 -2.39 -0.02 0.91 16 36 H 0.03 0.68 5.96 -2.38 -0.01 0.67 16 37 H 0.11 1.13 8.07 -2.39 -0.02 1.11 16 38 H 0.08 1.39 7.50 -2.38 -0.02 1.37 16 39 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 40 H 0.07 1.85 5.98 -2.39 -0.01 1.84 16 41 H 0.10 1.37 8.03 -2.39 -0.02 1.35 16 42 H 0.43 10.20 8.30 -92.71 -0.77 9.43 16 43 H 0.16 3.41 8.06 -2.92 -0.02 3.38 16 44 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 45 H 0.13 5.40 5.72 -2.91 -0.02 5.38 16 46 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 47 H 0.11 5.51 6.27 -2.91 -0.02 5.49 16 Total: -1.00 -77.15 381.64 4.84 -72.31 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.23 Total: 32.01 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 6.55 Total: -8.12 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -3.67 Total: -92.64 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -0.30 Total: -48.73 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -77.15 4.84 -72.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264834987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.930 kcal (2) G-P(sol) polarization free energy of solvation -77.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds