Wall clock time and date at job start Tue Mar 31 2020 18:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47127 * 2 1 4 4 H 1.09002 * 109.46672 * 304.99879 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99706 * 3 2 1 6 6 O 1.42902 * 109.46901 * 64.99458 * 3 2 1 7 7 C 1.35955 * 117.00031 * 204.04221 * 6 3 2 8 8 C 1.38745 * 119.98165 * 184.70631 * 7 6 3 9 9 C 1.38058 * 120.01939 * 180.28007 * 8 7 6 10 10 C 1.38917 * 119.98182 * 359.44579 * 9 8 7 11 11 N 1.39861 * 120.02387 * 180.29838 * 10 9 8 12 12 C 1.34775 * 120.00058 * 324.78654 * 11 10 9 13 13 O 1.21391 * 119.99690 * 4.19470 * 12 11 10 14 14 C 1.49328 * 120.00048 * 184.18711 * 12 11 10 15 15 O 1.21367 * 120.00260 * 0.02562 * 14 12 11 16 16 N 1.34783 * 120.00068 * 180.02562 * 14 12 11 17 17 C 1.46498 * 120.00141 * 180.02562 * 16 14 12 18 18 C 1.53000 * 109.47401 * 179.97438 * 17 16 14 19 19 C 1.50691 * 109.47333 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00382 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99993 * 179.97438 * 19 18 17 22 22 N 1.31506 * 119.99850 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99854 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47315 * 90.00274 * 23 21 19 25 25 H 1.48502 * 109.47254 * 209.99937 * 23 21 19 26 26 H 1.48502 * 109.47675 * 330.00172 * 23 21 19 27 27 C 1.38921 * 119.95772 * 0.27901 * 10 9 8 28 28 C 1.38066 * 119.97914 * 359.97438 * 27 10 9 29 29 H 1.08994 * 109.47499 * 299.99978 * 1 2 3 30 30 H 1.09000 * 109.47114 * 60.00264 * 1 2 3 31 31 H 1.09006 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47499 * 240.00022 * 2 1 3 33 33 H 1.09000 * 109.47114 * 119.99736 * 2 1 3 34 34 H 1.09003 * 109.46647 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47037 * 299.99740 * 5 3 2 36 36 H 1.09000 * 109.47080 * 60.00136 * 5 3 2 37 37 H 1.08000 * 119.99393 * 0.02777 * 8 7 6 38 38 H 1.08002 * 120.00773 * 179.72387 * 9 8 7 39 39 H 0.96999 * 119.99929 * 144.78717 * 11 10 9 40 40 H 0.97000 * 119.99876 * 0.02562 * 16 14 12 41 41 H 1.09000 * 109.47122 * 300.00074 * 17 16 14 42 42 H 1.09006 * 109.46950 * 59.99755 * 17 16 14 43 43 H 1.09003 * 109.46723 * 300.00168 * 18 17 16 44 44 H 1.08999 * 109.46764 * 59.99806 * 18 17 16 45 45 H 0.97002 * 119.99850 * 179.97438 * 22 21 19 46 46 H 1.07997 * 120.01119 * 180.02562 * 27 10 9 47 47 H 1.07996 * 119.99090 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1256 6 8 1.6618 2.0814 1.2210 7 6 1.5714 3.4379 1.2056 8 6 1.3050 4.1284 2.3792 9 6 1.2073 5.5054 2.3635 10 6 1.3872 6.2005 1.1742 11 7 1.2946 7.5960 1.1584 12 6 0.4113 8.2219 1.9613 13 8 -0.2497 7.5810 2.7524 14 6 0.2460 9.7036 1.8777 15 8 0.9067 10.3443 1.0865 16 7 -0.6369 10.3296 2.6809 17 6 -0.7995 11.7832 2.5985 18 6 -1.8553 12.2365 3.6089 19 6 -2.0220 13.7317 3.5246 20 1 -1.4341 14.3019 2.8205 21 6 -2.9260 14.3720 4.3456 22 7 -3.6422 13.6778 5.2026 23 14 -3.1322 16.2256 4.2416 24 1 -4.1840 16.5516 3.2452 25 1 -3.5288 16.7550 5.5711 26 1 -1.8477 16.8441 3.8257 27 6 1.6595 5.5087 0.0007 28 6 1.7517 4.1313 0.0174 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9280 2.4721 -0.1261 35 1 3.9994 0.9054 0.7162 36 1 3.8532 0.9571 -1.0570 37 1 1.1700 3.5882 3.3047 38 1 0.9956 6.0424 3.2763 39 1 1.8660 8.1133 0.5696 40 1 -1.1647 9.8176 3.3135 41 1 0.1505 12.2683 2.8228 42 1 -1.1186 12.0567 1.5927 43 1 -2.8051 11.7513 3.3841 44 1 -1.5366 11.9629 4.6147 45 1 -4.2779 14.1282 5.7805 46 1 1.7999 6.0483 -0.9242 47 1 1.9638 3.5933 -0.8947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273070325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:08 Heat of formation + Delta-G solvation = -94.899274 kcal Electronic energy + Delta-G solvation = -27185.952957 eV Core-core repulsion = 23140.809992 eV Total energy + Delta-G solvation = -4045.142964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.12085 -40.33789 -38.85712 -37.66510 -35.51705 -34.86158 -33.99181 -32.87635 -31.41347 -30.34912 -29.90069 -29.09164 -25.82376 -24.62129 -23.88923 -23.57984 -22.20898 -21.30333 -20.90509 -20.06316 -18.78852 -18.55468 -17.45186 -16.61585 -16.27116 -16.05361 -15.98446 -15.57095 -15.12560 -14.90638 -14.59041 -14.49182 -14.40429 -14.12961 -13.81776 -13.62056 -13.54913 -13.37820 -13.05626 -12.98555 -12.75784 -12.34168 -12.27513 -12.22638 -11.67983 -11.53347 -11.47438 -11.26598 -11.16088 -11.08025 -10.82409 -10.68311 -10.43043 -10.14723 -9.83240 -9.50680 -9.29841 -9.20531 -8.76065 -8.44092 -7.98067 -6.11805 -4.15640 0.93424 1.07724 1.62007 2.39977 2.86494 3.25867 3.28083 3.34484 3.37968 3.55588 3.76323 4.17040 4.37874 4.38384 4.45902 4.54469 4.62452 4.67442 4.81194 4.94076 5.03566 5.09531 5.11204 5.20666 5.25198 5.30342 5.41642 5.48877 5.56028 5.63758 5.71751 5.76129 5.85097 6.03262 6.04338 6.13632 6.18625 6.19854 6.52406 6.57905 6.64487 6.94464 7.15436 7.42032 7.55005 7.57917 7.81219 7.85069 8.15117 8.27741 8.89856 9.49415 10.99619 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.033422 B = 0.001615 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.563532 B =17332.744916 C =17794.325309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.075 0.925 5 C -0.180 4.180 6 O -0.307 6.307 7 C 0.120 3.880 8 C -0.134 4.134 9 C -0.077 4.077 10 C 0.105 3.895 11 N -0.646 5.646 12 C 0.508 3.492 13 O -0.502 6.502 14 C 0.500 3.500 15 O -0.531 6.531 16 N -0.683 5.683 17 C 0.118 3.882 18 C 0.010 3.990 19 C -0.524 4.524 20 H 0.060 0.940 21 C 0.060 3.940 22 N -0.892 5.892 23 Si 0.898 3.102 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.272 1.272 27 C -0.099 4.099 28 C -0.194 4.194 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.135 0.865 38 H 0.147 0.853 39 H 0.422 0.578 40 H 0.411 0.589 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.025 0.975 44 H 0.026 0.974 45 H 0.263 0.737 46 H 0.130 0.870 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.286 -27.458 -11.706 32.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.092 0.908 5 C -0.237 4.237 6 O -0.221 6.221 7 C 0.074 3.926 8 C -0.153 4.153 9 C -0.097 4.097 10 C 0.011 3.989 11 N -0.294 5.294 12 C 0.290 3.710 13 O -0.375 6.375 14 C 0.279 3.721 15 O -0.409 6.409 16 N -0.334 5.334 17 C -0.003 4.003 18 C -0.027 4.027 19 C -0.563 4.563 20 H 0.079 0.921 21 C -0.142 4.142 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.119 4.119 28 C -0.213 4.213 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.260 0.740 40 H 0.247 0.753 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.148 0.852 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.066 -27.482 -11.385 32.490 hybrid contribution -0.133 1.092 -0.258 1.130 sum 12.934 -26.390 -11.643 31.612 Atomic orbital electron populations 1.21769 0.95000 1.01945 1.02532 1.21627 0.96953 0.93824 1.03175 1.22531 0.94996 0.93982 0.86312 0.90751 1.22356 0.95201 1.03203 1.02957 1.86140 1.83697 1.16492 1.35811 1.18990 0.96958 0.82567 0.94045 1.20351 1.04959 0.93153 0.96879 1.21168 0.97530 0.93199 0.97841 1.17655 1.04816 0.82294 0.94135 1.43105 1.38576 1.05094 1.42606 1.20629 0.79785 0.89465 0.81093 1.90762 1.44469 1.67033 1.35275 1.19747 0.82290 0.87156 0.82896 1.90750 1.45871 1.66811 1.37449 1.46241 1.38656 1.10840 1.37639 1.21972 1.01372 0.75078 1.01899 1.19364 0.92850 0.96988 0.93500 1.21003 1.22579 0.91612 1.21113 0.92149 1.25000 0.95485 0.98690 0.95068 1.69955 1.24671 1.35810 1.22556 0.86493 0.78553 0.84989 0.77388 1.20547 1.21143 1.19722 1.20720 1.01065 0.93610 0.96492 1.21018 1.08389 0.94341 0.97574 0.91825 0.92787 0.92415 0.90112 0.90753 0.91762 0.91395 0.91043 0.84756 0.83500 0.74016 0.75285 0.91718 0.91754 0.95624 0.95605 0.92752 0.85172 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 9.81 37.16 0.36 -0.54 16 2 C -0.12 -0.61 5.64 -26.73 -0.15 -0.77 16 3 C 0.08 0.49 2.25 -26.73 -0.06 0.43 16 4 H 0.07 0.43 5.89 -51.93 -0.31 0.12 16 5 C -0.18 -0.95 9.31 37.16 0.35 -0.60 16 6 O -0.31 -2.82 9.34 -19.60 -0.18 -3.00 16 7 C 0.12 1.19 6.55 -39.20 -0.26 0.93 16 8 C -0.13 -1.44 9.98 -39.46 -0.39 -1.83 16 9 C -0.08 -0.92 8.69 -39.40 -0.34 -1.26 16 10 C 0.10 1.19 6.29 -83.69 -0.53 0.67 16 11 N -0.65 -7.66 5.32 -10.27 -0.05 -7.72 16 12 C 0.51 7.42 7.72 -11.64 -0.09 7.33 16 13 O -0.50 -8.09 13.93 5.46 0.08 -8.02 16 14 C 0.50 8.31 7.89 -11.64 -0.09 8.22 16 15 O -0.53 -9.69 16.48 5.48 0.09 -9.60 16 16 N -0.68 -12.07 5.55 -60.77 -0.34 -12.41 16 17 C 0.12 2.42 5.61 -4.04 -0.02 2.39 16 18 C 0.01 0.25 5.09 -27.89 -0.14 0.11 16 19 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 23 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 27 C -0.10 -0.92 9.96 -39.39 -0.39 -1.31 16 28 C -0.19 -1.69 8.44 -39.46 -0.33 -2.03 16 29 H 0.06 0.47 7.82 -51.93 -0.41 0.06 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.38 7.52 -51.93 -0.39 -0.01 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.15 1.89 6.24 -52.49 -0.33 1.56 16 39 H 0.42 4.26 8.30 -40.82 -0.34 3.92 16 40 H 0.41 6.90 7.94 -40.82 -0.32 6.58 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.13 0.86 5.75 -52.49 -0.30 0.56 16 LS Contribution 395.60 15.07 5.96 5.96 Total: -1.00 -31.25 395.60 -8.24 -39.50 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.01 Total: 5.63 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.50 Total: -1.27 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.34 Total: -45.29 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.02 Total: -20.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.25 -8.24 -39.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.403 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds