Wall clock time and date at job start Tue Mar 31 2020 18:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47127 * 2 1 4 4 H 1.09002 * 109.46672 * 304.99879 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99706 * 3 2 1 6 6 O 1.42902 * 109.46901 * 64.99458 * 3 2 1 7 7 C 1.35955 * 117.00031 * 204.04221 * 6 3 2 8 8 C 1.38745 * 119.98165 * 184.70631 * 7 6 3 9 9 C 1.38058 * 120.01939 * 180.28007 * 8 7 6 10 10 C 1.38917 * 119.98182 * 359.44579 * 9 8 7 11 11 N 1.39861 * 120.02387 * 180.29838 * 10 9 8 12 12 C 1.34775 * 120.00058 * 324.78654 * 11 10 9 13 13 O 1.21391 * 119.99690 * 4.19470 * 12 11 10 14 14 C 1.49328 * 120.00048 * 184.18711 * 12 11 10 15 15 O 1.21367 * 120.00260 * 0.02562 * 14 12 11 16 16 N 1.34783 * 120.00068 * 180.02562 * 14 12 11 17 17 C 1.46498 * 120.00141 * 180.02562 * 16 14 12 18 18 C 1.53000 * 109.47401 * 179.97438 * 17 16 14 19 19 C 1.50691 * 109.47333 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00382 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99993 * 179.97438 * 19 18 17 22 22 N 1.31506 * 119.99850 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99854 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47315 * 90.00274 * 23 21 19 25 25 H 1.48502 * 109.47254 * 209.99937 * 23 21 19 26 26 H 1.48502 * 109.47675 * 330.00172 * 23 21 19 27 27 C 1.38921 * 119.95772 * 0.27901 * 10 9 8 28 28 C 1.38066 * 119.97914 * 359.97438 * 27 10 9 29 29 H 1.08994 * 109.47499 * 299.99978 * 1 2 3 30 30 H 1.09000 * 109.47114 * 60.00264 * 1 2 3 31 31 H 1.09006 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47499 * 240.00022 * 2 1 3 33 33 H 1.09000 * 109.47114 * 119.99736 * 2 1 3 34 34 H 1.09003 * 109.46647 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47037 * 299.99740 * 5 3 2 36 36 H 1.09000 * 109.47080 * 60.00136 * 5 3 2 37 37 H 1.08000 * 119.99393 * 0.02777 * 8 7 6 38 38 H 1.08002 * 120.00773 * 179.72387 * 9 8 7 39 39 H 0.96999 * 119.99929 * 144.78717 * 11 10 9 40 40 H 0.97000 * 119.99876 * 0.02562 * 16 14 12 41 41 H 1.09000 * 109.47122 * 300.00074 * 17 16 14 42 42 H 1.09006 * 109.46950 * 59.99755 * 17 16 14 43 43 H 1.09003 * 109.46723 * 300.00168 * 18 17 16 44 44 H 1.08999 * 109.46764 * 59.99806 * 18 17 16 45 45 H 0.97002 * 119.99850 * 179.97438 * 22 21 19 46 46 H 1.07997 * 120.01119 * 180.02562 * 27 10 9 47 47 H 1.07996 * 119.99090 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1256 6 8 1.6618 2.0814 1.2210 7 6 1.5714 3.4379 1.2056 8 6 1.3050 4.1284 2.3792 9 6 1.2073 5.5054 2.3635 10 6 1.3872 6.2005 1.1742 11 7 1.2946 7.5960 1.1584 12 6 0.4113 8.2219 1.9613 13 8 -0.2497 7.5810 2.7524 14 6 0.2460 9.7036 1.8777 15 8 0.9067 10.3443 1.0865 16 7 -0.6369 10.3296 2.6809 17 6 -0.7995 11.7832 2.5985 18 6 -1.8553 12.2365 3.6089 19 6 -2.0220 13.7317 3.5246 20 1 -1.4341 14.3019 2.8205 21 6 -2.9260 14.3720 4.3456 22 7 -3.6422 13.6778 5.2026 23 14 -3.1322 16.2256 4.2416 24 1 -4.1840 16.5516 3.2452 25 1 -3.5288 16.7550 5.5711 26 1 -1.8477 16.8441 3.8257 27 6 1.6595 5.5087 0.0007 28 6 1.7517 4.1313 0.0174 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9280 2.4721 -0.1261 35 1 3.9994 0.9054 0.7162 36 1 3.8532 0.9571 -1.0570 37 1 1.1700 3.5882 3.3047 38 1 0.9956 6.0424 3.2763 39 1 1.8660 8.1133 0.5696 40 1 -1.1647 9.8176 3.3135 41 1 0.1505 12.2683 2.8228 42 1 -1.1186 12.0567 1.5927 43 1 -2.8051 11.7513 3.3841 44 1 -1.5366 11.9629 4.6147 45 1 -4.2779 14.1282 5.7805 46 1 1.7999 6.0483 -0.9242 47 1 1.9638 3.5933 -0.8947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273070325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:07 Heat of formation + Delta-G solvation = -114.711320 kcal Electronic energy + Delta-G solvation = -27186.812071 eV Core-core repulsion = 23140.809992 eV Total energy + Delta-G solvation = -4046.002079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.17848 -41.19833 -40.02881 -38.60472 -36.93281 -35.89779 -34.90175 -34.63162 -32.15929 -31.72027 -30.81956 -30.00567 -27.43574 -25.69364 -24.82627 -24.31264 -23.21727 -22.73997 -21.93070 -21.09735 -19.88705 -19.34500 -18.61735 -18.37474 -17.46151 -17.27010 -16.87264 -16.51839 -16.38602 -16.26674 -15.91393 -15.58317 -15.22034 -14.96923 -14.84334 -14.67294 -14.32485 -14.30359 -14.24890 -13.94731 -13.79540 -13.46034 -13.26290 -12.94842 -12.84920 -12.78427 -12.70731 -12.52717 -12.28833 -12.21777 -11.97750 -11.74603 -11.67752 -11.44272 -11.38087 -11.00351 -10.74301 -10.61693 -10.23854 -10.04607 -8.80697 -8.23378 -6.34580 -0.06919 0.29916 0.54026 1.20924 1.43875 1.44085 1.55628 2.01812 2.24614 2.39400 2.59699 2.72673 3.11814 3.31884 3.71077 3.80175 3.85991 3.99879 4.11219 4.17648 4.35226 4.37385 4.40454 4.44908 4.50041 4.58081 4.69506 4.71010 4.80938 4.89440 4.97654 4.99672 5.03749 5.09094 5.19666 5.19981 5.27119 5.27818 5.31491 5.41658 5.42669 5.54667 5.71859 5.76532 5.90021 6.12543 6.29171 6.47799 6.64340 6.78534 6.85073 7.35070 8.88559 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.033422 B = 0.001615 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.563532 B =17332.744916 C =17794.325309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C 0.070 3.930 4 H 0.084 0.916 5 C -0.177 4.177 6 O -0.320 6.320 7 C 0.121 3.879 8 C -0.148 4.148 9 C -0.091 4.091 10 C 0.081 3.919 11 N -0.628 5.628 12 C 0.514 3.486 13 O -0.521 6.521 14 C 0.506 3.494 15 O -0.544 6.544 16 N -0.686 5.686 17 C 0.138 3.862 18 C 0.017 3.983 19 C -0.545 4.545 20 H 0.066 0.934 21 C 0.005 3.995 22 N -0.928 5.928 23 Si 0.968 3.032 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.263 1.263 27 C -0.088 4.088 28 C -0.189 4.189 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.431 0.569 40 H 0.415 0.585 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.265 0.735 46 H 0.157 0.843 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.453 -28.222 -13.965 34.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C 0.014 3.986 4 H 0.102 0.898 5 C -0.234 4.234 6 O -0.235 6.235 7 C 0.075 3.925 8 C -0.167 4.167 9 C -0.111 4.111 10 C -0.012 4.012 11 N -0.275 5.275 12 C 0.296 3.704 13 O -0.397 6.397 14 C 0.286 3.714 15 O -0.423 6.423 16 N -0.337 5.337 17 C 0.015 3.985 18 C -0.020 4.020 19 C -0.584 4.584 20 H 0.084 0.916 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.792 3.208 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.187 1.187 27 C -0.108 4.108 28 C -0.208 4.208 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.271 0.729 40 H 0.252 0.748 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.026 0.974 44 H 0.027 0.973 45 H 0.074 0.926 46 H 0.175 0.825 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 14.270 -28.279 -13.676 34.502 hybrid contribution -0.447 1.151 0.399 1.298 sum 13.823 -27.128 -13.277 33.216 Atomic orbital electron populations 1.21772 0.95657 1.02265 1.01636 1.21666 0.96325 0.93274 1.04087 1.22824 0.95885 0.94408 0.85464 0.89776 1.22345 0.94163 1.03028 1.03866 1.86143 1.83600 1.16055 1.37671 1.19101 0.96121 0.83137 0.94150 1.20417 1.05664 0.92891 0.97766 1.21090 0.98513 0.93761 0.97696 1.17820 1.06681 0.81760 0.94932 1.42943 1.37461 1.05564 1.41582 1.20130 0.80433 0.88223 0.81661 1.90770 1.45634 1.66929 1.36347 1.20008 0.81301 0.88116 0.81958 1.90737 1.46209 1.67489 1.37863 1.46062 1.39448 1.09804 1.38378 1.21512 0.99849 0.76731 1.00396 1.19190 0.93176 0.96011 0.93662 1.21453 1.22646 0.93088 1.21165 0.91622 1.25913 0.95138 1.03674 0.94642 1.70076 1.25398 1.37825 1.23427 0.85403 0.78866 0.79023 0.77489 1.19813 1.20825 1.18725 1.21000 0.99303 0.93889 0.96582 1.21317 1.07187 0.94206 0.98101 0.93913 0.92433 0.91563 0.87780 0.91221 0.92328 0.91995 0.88882 0.84485 0.85203 0.72907 0.74830 0.91786 0.91818 0.97393 0.97349 0.92602 0.82492 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.81 71.98 0.71 -0.90 16 2 C -0.12 -0.97 5.64 30.59 0.17 -0.79 16 3 C 0.07 0.73 2.25 30.60 0.07 0.80 16 4 H 0.08 0.71 5.89 -2.39 -0.01 0.70 16 5 C -0.18 -1.43 9.31 71.98 0.67 -0.76 16 6 O -0.32 -5.52 9.34 -93.04 -0.87 -6.39 16 7 C 0.12 2.26 6.55 22.51 0.15 2.41 16 8 C -0.15 -3.19 9.98 22.35 0.22 -2.97 16 9 C -0.09 -2.19 8.69 22.39 0.19 -1.99 16 10 C 0.08 1.77 6.29 38.19 0.24 2.01 16 11 N -0.63 -14.32 5.32 -304.76 -1.62 -15.94 16 12 C 0.51 14.93 7.72 87.23 0.67 15.60 16 13 O -0.52 -17.11 13.93 -3.38 -0.05 -17.16 16 14 C 0.51 16.70 7.89 87.23 0.69 17.39 16 15 O -0.54 -19.46 16.48 -3.30 -0.05 -19.51 16 16 N -0.69 -24.49 5.55 -464.52 -2.58 -27.07 16 17 C 0.14 5.67 5.61 86.38 0.48 6.15 16 18 C 0.02 0.86 5.09 29.85 0.15 1.01 16 19 C -0.55 -29.89 9.11 25.60 0.23 -29.66 16 20 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 21 C 0.01 0.28 5.46 84.66 0.46 0.75 16 22 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16 23 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 27 C -0.09 -1.42 9.96 22.39 0.22 -1.20 16 28 C -0.19 -2.84 8.44 22.35 0.19 -2.65 16 29 H 0.04 0.61 7.82 -2.39 -0.02 0.59 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.55 7.52 -2.39 -0.02 0.53 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 38 H 0.13 3.53 6.24 -2.91 -0.02 3.51 16 39 H 0.43 8.06 8.30 -92.71 -0.77 7.29 16 40 H 0.42 14.29 7.94 -92.71 -0.74 13.56 16 41 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 46 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 47 H 0.16 1.49 5.75 -2.91 -0.02 1.47 16 Total: -1.00 -67.14 395.60 2.16 -64.98 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.50 Total: 25.06 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.53 Total: 5.20 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -3.92 Total: -97.39 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.97 Total: -43.06 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -67.14 2.16 -64.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.732 kcal (2) G-P(sol) polarization free energy of solvation -67.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds