Wall clock time and date at job start Tue Mar 31 2020 18:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42894 * 109.47530 * 2 1 4 4 C 1.35895 * 117.00616 * 180.02562 * 3 2 1 5 5 C 1.38617 * 120.01248 * 359.97438 * 4 3 2 6 6 C 1.38813 * 119.86668 * 179.97438 * 5 4 3 7 7 N 1.39724 * 120.04651 * 180.02562 * 6 5 4 8 8 C 1.34778 * 120.00161 * 146.73782 * 7 6 5 9 9 O 1.21373 * 119.99606 * 354.73433 * 8 7 6 10 10 C 1.49349 * 120.00294 * 174.44851 * 8 7 6 11 11 O 1.21363 * 119.99564 * 0.28550 * 10 8 7 12 12 N 1.34773 * 120.00205 * 180.27742 * 10 8 7 13 13 C 1.46500 * 119.99854 * 180.02562 * 12 10 8 14 14 H 1.08998 * 109.47342 * 35.00508 * 13 12 10 15 15 C 1.50707 * 109.47002 * 155.00258 * 13 12 10 16 16 H 1.08001 * 119.99786 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99834 * 180.02562 * 15 13 12 18 18 N 1.31506 * 120.00157 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99710 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47074 * 59.99912 * 19 17 15 21 21 H 1.48498 * 109.46910 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47325 * 299.99979 * 19 17 15 23 23 C 1.53002 * 109.47474 * 275.00222 * 13 12 10 24 24 C 1.52996 * 109.47003 * 64.99875 * 23 13 12 25 25 C 1.38987 * 119.90779 * 0.27381 * 6 5 4 26 26 C 1.38108 * 120.03297 * 359.45050 * 25 6 5 27 27 C 1.38231 * 120.12489 * 0.54944 * 26 25 6 28 28 C 1.50708 * 119.94752 * 179.70324 * 27 26 25 29 29 H 1.09001 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46604 * 300.00196 * 1 2 3 31 31 H 1.09000 * 109.47156 * 59.99923 * 1 2 3 32 32 H 1.09008 * 109.46991 * 239.99669 * 2 1 3 33 33 H 1.09000 * 109.47156 * 120.00077 * 2 1 3 34 34 H 1.07997 * 120.06536 * 0.02562 * 5 4 3 35 35 H 0.97002 * 120.00320 * 326.74784 * 7 6 5 36 36 H 0.97000 * 119.99881 * 0.02562 * 12 10 8 37 37 H 0.97006 * 120.00068 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.47250 * 185.00568 * 23 13 12 39 39 H 1.09006 * 109.46815 * 305.00453 * 23 13 12 40 40 H 1.08994 * 109.47406 * 179.97438 * 24 23 13 41 41 H 1.08998 * 109.47683 * 300.00428 * 24 23 13 42 42 H 1.09006 * 109.47216 * 60.00195 * 24 23 13 43 43 H 1.08002 * 119.98361 * 179.72608 * 25 6 5 44 44 H 1.07999 * 119.93918 * 180.25458 * 26 25 6 45 45 H 1.09005 * 109.46417 * 270.02392 * 28 27 26 46 46 H 1.08998 * 109.46907 * 30.01742 * 28 27 26 47 47 H 1.08997 * 109.47135 * 150.02285 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1984 0.4262 -0.0005 6 6 5.5740 0.6116 -0.0016 7 7 6.4289 -0.4935 -0.0021 8 6 7.6127 -0.4295 -0.6432 9 8 7.8951 0.5516 -1.2995 10 6 8.5797 -1.5631 -0.5409 11 8 8.2973 -2.5442 0.1153 12 7 9.7658 -1.4967 -1.1774 13 6 10.7140 -2.6090 -1.0775 14 1 10.1666 -3.5506 -1.0370 15 6 11.6203 -2.6062 -2.2816 16 1 11.5020 -1.8511 -3.0447 17 6 12.6004 -3.5675 -2.4089 18 7 12.7447 -4.4866 -1.4794 19 14 13.7242 -3.5636 -3.9011 20 1 14.4706 -2.2809 -3.9553 21 1 14.6853 -4.6911 -3.7998 22 1 12.9106 -3.7153 -5.1339 23 6 11.5528 -2.4516 0.1925 24 6 10.6484 -2.5792 1.4199 25 6 6.0999 1.8982 0.0030 26 6 5.2547 2.9904 -0.0027 27 6 3.8845 2.8074 -0.0017 28 6 2.9659 4.0021 -0.0012 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7870 -0.5723 -0.0005 35 1 6.1704 -1.3070 0.4588 36 1 9.9916 -0.7125 -1.7017 37 1 13.4345 -5.1627 -1.5689 38 1 12.3169 -3.2283 0.2218 39 1 12.0304 -1.4718 0.1933 40 1 11.2459 -2.4676 2.3246 41 1 9.8843 -1.8025 1.3906 42 1 10.1707 -3.5590 1.4191 43 1 7.1700 2.0439 0.0067 44 1 5.6649 3.9894 -0.0033 45 1 2.7456 4.2905 1.0266 46 1 3.4495 4.8324 -0.5158 47 1 2.0384 3.7475 -0.5139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275857314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:41 Heat of formation + Delta-G solvation = -91.289175 kcal Electronic energy + Delta-G solvation = -28389.563899 eV Core-core repulsion = 24344.577481 eV Total energy + Delta-G solvation = -4044.986419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.00737 -40.07450 -38.58588 -37.45898 -35.58855 -34.93091 -32.47999 -32.17533 -31.58957 -31.02644 -29.94428 -27.46639 -26.68323 -24.57266 -24.15106 -22.98358 -22.15973 -21.36941 -20.30547 -19.52455 -18.75857 -18.29383 -16.63226 -16.45298 -16.34712 -16.06644 -15.87110 -15.38340 -15.33353 -15.00742 -14.33785 -14.18815 -13.95575 -13.86760 -13.55645 -13.37680 -12.99676 -12.94521 -12.77335 -12.59050 -12.20878 -12.10831 -12.07573 -11.70124 -11.63038 -11.34766 -11.30233 -11.16267 -11.12629 -10.99612 -10.87567 -10.39666 -10.29811 -10.14226 -9.73283 -9.18123 -9.10686 -8.71696 -8.59166 -8.08240 -7.95938 -6.19830 -4.29755 0.97370 1.29414 1.87810 2.61018 2.94086 3.23665 3.28598 3.30857 3.50138 3.74165 4.03051 4.30978 4.55483 4.57907 4.66291 4.80401 4.89506 5.01631 5.03676 5.05800 5.12462 5.21562 5.36334 5.42440 5.42920 5.52232 5.56274 5.66620 5.83840 6.02683 6.15940 6.28371 6.31338 6.33210 6.39275 6.52096 6.66136 6.91193 6.97704 7.10043 7.14459 7.19314 7.23940 7.46226 7.60313 7.74580 7.86792 8.05118 8.39919 8.58132 8.82322 9.37109 10.85492 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.002250 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.223481 B =12441.578326 C =12730.815190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.312 6.312 4 C 0.147 3.853 5 C -0.231 4.231 6 C 0.186 3.814 7 N -0.653 5.653 8 C 0.507 3.493 9 O -0.501 6.501 10 C 0.495 3.505 11 O -0.529 6.529 12 N -0.666 5.666 13 C 0.268 3.732 14 H 0.055 0.945 15 C -0.538 4.538 16 H 0.064 0.936 17 C 0.069 3.931 18 N -0.882 5.882 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.276 1.276 23 C -0.129 4.129 24 C -0.139 4.139 25 C -0.153 4.153 26 C -0.063 4.063 27 C -0.136 4.136 28 C -0.100 4.100 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.132 0.868 35 H 0.422 0.578 36 H 0.402 0.598 37 H 0.266 0.734 38 H 0.104 0.896 39 H 0.035 0.965 40 H 0.026 0.974 41 H 0.035 0.965 42 H 0.051 0.949 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.183 11.396 4.904 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.225 6.225 4 C 0.101 3.899 5 C -0.253 4.253 6 C 0.091 3.909 7 N -0.299 5.299 8 C 0.290 3.710 9 O -0.374 6.374 10 C 0.273 3.727 11 O -0.408 6.408 12 N -0.315 5.315 13 C 0.167 3.833 14 H 0.073 0.927 15 C -0.576 4.576 16 H 0.082 0.918 17 C -0.135 4.135 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.168 4.168 24 C -0.196 4.196 25 C -0.173 4.173 26 C -0.081 4.081 27 C -0.138 4.138 28 C -0.157 4.157 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.150 0.850 35 H 0.260 0.740 36 H 0.236 0.764 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.155 0.845 44 H 0.151 0.849 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.102 11.293 4.930 23.578 hybrid contribution 0.736 -0.442 -0.791 1.167 sum -19.367 10.851 4.140 22.582 Atomic orbital electron populations 1.21768 0.92696 1.02904 1.03442 1.22808 0.95872 0.82041 1.01624 1.86054 1.18709 1.29150 1.88636 1.18406 0.82016 0.92960 0.96481 1.20888 0.92206 0.98849 1.13315 1.17449 0.88571 0.87187 0.97710 1.43273 1.17570 1.16147 1.52949 1.21035 0.82478 0.88660 0.78807 1.90745 1.75749 1.33054 1.37868 1.19571 0.83770 0.86772 0.82594 1.90745 1.76899 1.32289 1.40850 1.46471 1.15307 1.22940 1.46794 1.19026 0.85702 0.84274 0.94277 0.92733 1.21166 1.16518 1.14424 1.05518 0.91803 1.24868 0.97031 0.94894 0.96720 1.69868 1.33440 1.15396 1.33194 0.86460 0.80161 0.77739 0.82511 1.20035 1.21082 1.20097 1.21968 0.99792 1.01679 0.93358 1.21855 0.98850 1.01243 0.97669 1.21099 1.01287 0.90502 1.04453 1.20751 0.91340 0.98857 0.97180 1.19237 0.94245 0.92476 1.07811 1.20553 0.98462 0.94640 1.02028 0.90347 0.91546 0.91538 0.91925 0.91921 0.85013 0.73970 0.76360 0.92360 0.87809 0.94630 0.95440 0.94643 0.92947 0.84458 0.84918 0.91647 0.91781 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 37.16 0.38 -0.47 16 2 C 0.05 0.39 5.46 37.16 0.20 0.59 16 3 O -0.31 -3.21 9.17 -19.41 -0.18 -3.39 16 4 C 0.15 1.69 6.66 -39.25 -0.26 1.43 16 5 C -0.23 -2.69 8.95 -39.23 -0.35 -3.04 16 6 C 0.19 2.48 6.27 -83.77 -0.53 1.96 16 7 N -0.65 -9.13 5.32 -10.31 -0.05 -9.18 16 8 C 0.51 8.55 7.62 -11.63 -0.09 8.46 16 9 O -0.50 -9.08 14.17 5.48 0.08 -9.01 16 10 C 0.49 9.58 6.46 -11.63 -0.08 9.50 16 11 O -0.53 -11.05 13.62 5.49 0.07 -10.98 16 12 N -0.67 -13.89 5.01 -55.39 -0.28 -14.16 16 13 C 0.27 6.52 2.24 -69.08 -0.15 6.37 16 14 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 15 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 18 N -0.88 -23.94 11.29 55.43 0.63 -23.32 16 19 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 24 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 25 C -0.15 -2.05 8.65 -39.35 -0.34 -2.39 16 26 C -0.06 -0.70 9.69 -39.63 -0.38 -1.09 16 27 C -0.14 -1.50 5.90 -104.43 -0.62 -2.12 16 28 C -0.10 -0.86 9.79 36.01 0.35 -0.50 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.46 7.66 -51.92 -0.40 0.06 16 33 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 34 H 0.13 1.27 6.30 -52.49 -0.33 0.94 16 35 H 0.42 5.22 8.30 -40.82 -0.34 4.88 16 36 H 0.40 7.88 8.01 -40.82 -0.33 7.55 16 37 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.03 0.72 5.64 -51.93 -0.29 0.43 16 42 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 43 H 0.14 1.98 6.42 -52.49 -0.34 1.64 16 44 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 47 H 0.07 0.59 7.52 -51.93 -0.39 0.20 16 LS Contribution 385.32 15.07 5.81 5.81 Total: -1.00 -29.25 385.32 -7.87 -37.13 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.84 Total: 11.41 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.08 Total: 0.39 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.29 Total: -46.66 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.03 Total: -23.37 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.25 -7.87 -37.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275857314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.163 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds