Wall clock time and date at job start Tue Mar 31 2020 18:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42894 * 109.47530 * 2 1 4 4 C 1.35895 * 117.00616 * 180.02562 * 3 2 1 5 5 C 1.38617 * 120.01248 * 359.97438 * 4 3 2 6 6 C 1.38813 * 119.86668 * 179.97438 * 5 4 3 7 7 N 1.39724 * 120.04651 * 180.02562 * 6 5 4 8 8 C 1.34778 * 120.00161 * 146.73782 * 7 6 5 9 9 O 1.21373 * 119.99606 * 354.73433 * 8 7 6 10 10 C 1.49349 * 120.00294 * 174.44851 * 8 7 6 11 11 O 1.21363 * 119.99564 * 0.28550 * 10 8 7 12 12 N 1.34773 * 120.00205 * 180.27742 * 10 8 7 13 13 C 1.46500 * 119.99854 * 180.02562 * 12 10 8 14 14 H 1.08998 * 109.47342 * 35.00508 * 13 12 10 15 15 C 1.50707 * 109.47002 * 155.00258 * 13 12 10 16 16 H 1.08001 * 119.99786 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99834 * 180.02562 * 15 13 12 18 18 N 1.31506 * 120.00157 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99710 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47074 * 59.99912 * 19 17 15 21 21 H 1.48498 * 109.46910 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47325 * 299.99979 * 19 17 15 23 23 C 1.53002 * 109.47474 * 275.00222 * 13 12 10 24 24 C 1.52996 * 109.47003 * 64.99875 * 23 13 12 25 25 C 1.38987 * 119.90779 * 0.27381 * 6 5 4 26 26 C 1.38108 * 120.03297 * 359.45050 * 25 6 5 27 27 C 1.38231 * 120.12489 * 0.54944 * 26 25 6 28 28 C 1.50708 * 119.94752 * 179.70324 * 27 26 25 29 29 H 1.09001 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46604 * 300.00196 * 1 2 3 31 31 H 1.09000 * 109.47156 * 59.99923 * 1 2 3 32 32 H 1.09008 * 109.46991 * 239.99669 * 2 1 3 33 33 H 1.09000 * 109.47156 * 120.00077 * 2 1 3 34 34 H 1.07997 * 120.06536 * 0.02562 * 5 4 3 35 35 H 0.97002 * 120.00320 * 326.74784 * 7 6 5 36 36 H 0.97000 * 119.99881 * 0.02562 * 12 10 8 37 37 H 0.97006 * 120.00068 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.47250 * 185.00568 * 23 13 12 39 39 H 1.09006 * 109.46815 * 305.00453 * 23 13 12 40 40 H 1.08994 * 109.47406 * 179.97438 * 24 23 13 41 41 H 1.08998 * 109.47683 * 300.00428 * 24 23 13 42 42 H 1.09006 * 109.47216 * 60.00195 * 24 23 13 43 43 H 1.08002 * 119.98361 * 179.72608 * 25 6 5 44 44 H 1.07999 * 119.93918 * 180.25458 * 26 25 6 45 45 H 1.09005 * 109.46417 * 270.02392 * 28 27 26 46 46 H 1.08998 * 109.46907 * 30.01742 * 28 27 26 47 47 H 1.08997 * 109.47135 * 150.02285 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1984 0.4262 -0.0005 6 6 5.5740 0.6116 -0.0016 7 7 6.4289 -0.4935 -0.0021 8 6 7.6127 -0.4295 -0.6432 9 8 7.8951 0.5516 -1.2995 10 6 8.5797 -1.5631 -0.5409 11 8 8.2973 -2.5442 0.1153 12 7 9.7658 -1.4967 -1.1774 13 6 10.7140 -2.6090 -1.0775 14 1 10.1666 -3.5506 -1.0370 15 6 11.6203 -2.6062 -2.2816 16 1 11.5020 -1.8511 -3.0447 17 6 12.6004 -3.5675 -2.4089 18 7 12.7447 -4.4866 -1.4794 19 14 13.7242 -3.5636 -3.9011 20 1 14.4706 -2.2809 -3.9553 21 1 14.6853 -4.6911 -3.7998 22 1 12.9106 -3.7153 -5.1339 23 6 11.5528 -2.4516 0.1925 24 6 10.6484 -2.5792 1.4199 25 6 6.0999 1.8982 0.0030 26 6 5.2547 2.9904 -0.0027 27 6 3.8845 2.8074 -0.0017 28 6 2.9659 4.0021 -0.0012 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7870 -0.5723 -0.0005 35 1 6.1704 -1.3070 0.4588 36 1 9.9916 -0.7125 -1.7017 37 1 13.4345 -5.1627 -1.5689 38 1 12.3169 -3.2283 0.2218 39 1 12.0304 -1.4718 0.1933 40 1 11.2459 -2.4676 2.3246 41 1 9.8843 -1.8025 1.3906 42 1 10.1707 -3.5590 1.4191 43 1 7.1700 2.0439 0.0067 44 1 5.6649 3.9894 -0.0033 45 1 2.7456 4.2905 1.0266 46 1 3.4495 4.8324 -0.5158 47 1 2.0384 3.7475 -0.5139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275857314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:40 Heat of formation + Delta-G solvation = -109.299847 kcal Electronic energy + Delta-G solvation = -28390.344901 eV Core-core repulsion = 24344.577481 eV Total energy + Delta-G solvation = -4045.767420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.20867 -41.15689 -39.97621 -38.46592 -37.23173 -36.19898 -34.34625 -32.92854 -32.82986 -32.39902 -30.78038 -29.25199 -27.80605 -25.84623 -25.03547 -24.64431 -23.15774 -22.31184 -21.75322 -21.21560 -20.12612 -19.38680 -18.24033 -17.70431 -17.45695 -17.09668 -17.05265 -16.81834 -16.64590 -16.31851 -15.89629 -15.49947 -15.07830 -14.74691 -14.68251 -14.62010 -14.42849 -13.87444 -13.61782 -13.54706 -13.48881 -13.31245 -13.20709 -13.05517 -12.94018 -12.90024 -12.68536 -12.62585 -12.31814 -12.16055 -12.12350 -11.98021 -11.80241 -11.61246 -11.15673 -11.12489 -10.65367 -10.54159 -9.86724 -9.63032 -8.91013 -8.19287 -6.36384 -0.11376 0.37088 0.59499 1.27582 1.46128 1.46509 1.54771 2.12153 2.21941 2.38786 2.69513 2.71707 3.10553 3.46985 3.77586 3.91322 4.05896 4.09670 4.14043 4.23753 4.38170 4.39901 4.47450 4.51147 4.53832 4.70107 4.76471 4.88214 4.90355 4.95745 5.00184 5.01651 5.06411 5.21127 5.24666 5.32833 5.33930 5.36096 5.37784 5.51467 5.54988 5.65699 5.75384 5.79797 5.98899 6.10260 6.36688 6.52559 6.65509 6.76341 7.07966 7.35406 8.85649 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.002250 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.223481 B =12441.578326 C =12730.815190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.042 3.958 3 O -0.317 6.317 4 C 0.141 3.859 5 C -0.228 4.228 6 C 0.162 3.838 7 N -0.636 5.636 8 C 0.517 3.483 9 O -0.516 6.516 10 C 0.496 3.504 11 O -0.545 6.545 12 N -0.670 5.670 13 C 0.276 3.724 14 H 0.016 0.984 15 C -0.555 4.555 16 H 0.068 0.932 17 C 0.022 3.978 18 N -0.909 5.909 19 Si 0.968 3.032 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.273 1.273 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.169 4.169 26 C -0.062 4.062 27 C -0.138 4.138 28 C -0.098 4.098 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.149 0.851 35 H 0.429 0.571 36 H 0.408 0.592 37 H 0.267 0.733 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.049 0.951 41 H 0.039 0.961 42 H 0.036 0.964 43 H 0.123 0.877 44 H 0.156 0.844 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.577 12.768 4.777 25.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 O -0.231 6.231 4 C 0.094 3.906 5 C -0.249 4.249 6 C 0.068 3.932 7 N -0.283 5.283 8 C 0.299 3.701 9 O -0.390 6.390 10 C 0.276 3.724 11 O -0.424 6.424 12 N -0.319 5.319 13 C 0.174 3.826 14 H 0.033 0.967 15 C -0.593 4.593 16 H 0.086 0.914 17 C -0.179 4.179 18 N -0.547 5.547 19 Si 0.793 3.207 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.162 4.162 24 C -0.184 4.184 25 C -0.190 4.190 26 C -0.081 4.081 27 C -0.139 4.139 28 C -0.155 4.155 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.166 0.834 35 H 0.269 0.731 36 H 0.244 0.756 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.141 0.859 44 H 0.174 0.826 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.548 12.682 4.821 25.464 hybrid contribution 1.005 -0.847 -0.704 1.491 sum -20.544 11.834 4.116 24.063 Atomic orbital electron populations 1.21786 0.91180 1.04081 1.03382 1.23080 0.97123 0.80958 1.02123 1.86066 1.17874 1.30821 1.88370 1.18589 0.82648 0.93141 0.96195 1.21025 0.91412 0.99967 1.12447 1.17598 0.89095 0.86787 0.99758 1.43085 1.16543 1.16792 1.51908 1.20345 0.82927 0.87455 0.79393 1.90745 1.76236 1.33150 1.38901 1.19948 0.83617 0.87241 0.81584 1.90733 1.77187 1.33225 1.41290 1.46241 1.15635 1.22381 1.47663 1.18649 0.85671 0.83769 0.94499 0.96660 1.21486 1.16916 1.14683 1.06194 0.91400 1.25673 0.98391 0.94506 0.99315 1.69998 1.33997 1.15914 1.34778 0.85456 0.78241 0.77924 0.79089 1.19215 1.20845 1.19798 1.21824 0.99450 1.00902 0.94062 1.21708 0.98658 1.00418 0.97578 1.21135 1.00959 0.91317 1.05546 1.20994 0.91339 0.99338 0.96404 1.19617 0.94573 0.93359 1.06345 1.20601 0.97922 0.94032 1.02918 0.88564 0.91465 0.91722 0.91702 0.91126 0.83358 0.73132 0.75606 0.92341 0.90242 0.94149 0.93212 0.94165 0.94531 0.85921 0.82622 0.90562 0.90254 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 71.98 0.74 -0.62 16 2 C 0.04 0.55 5.46 71.98 0.39 0.95 16 3 O -0.32 -5.95 9.17 -92.37 -0.85 -6.80 16 4 C 0.14 2.99 6.66 22.49 0.15 3.13 16 5 C -0.23 -4.98 8.95 22.50 0.20 -4.78 16 6 C 0.16 4.20 6.27 38.20 0.24 4.44 16 7 N -0.64 -17.51 5.32 -304.89 -1.62 -19.14 16 8 C 0.52 17.37 7.62 87.24 0.66 18.03 16 9 O -0.52 -18.67 14.17 -3.32 -0.05 -18.72 16 10 C 0.50 19.42 6.46 87.24 0.56 19.98 16 11 O -0.55 -23.07 13.62 -3.29 -0.04 -23.11 16 12 N -0.67 -28.34 5.01 -447.52 -2.24 -30.59 16 13 C 0.28 13.79 2.24 44.25 0.10 13.89 16 14 H 0.02 0.89 7.58 -2.39 -0.02 0.87 16 15 C -0.55 -29.08 8.73 25.60 0.22 -28.85 16 16 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 17 C 0.02 1.17 5.29 84.66 0.45 1.62 16 18 N -0.91 -50.28 11.29 21.45 0.24 -50.04 16 19 Si 0.97 41.66 29.54 68.60 2.03 43.69 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 C -0.12 -5.88 5.45 30.59 0.17 -5.71 16 24 C -0.13 -5.35 8.51 71.98 0.61 -4.73 16 25 C -0.17 -4.42 8.65 22.42 0.19 -4.23 16 26 C -0.06 -1.30 9.69 22.24 0.22 -1.09 16 27 C -0.14 -2.77 5.90 -19.74 -0.12 -2.88 16 28 C -0.10 -1.44 9.79 71.24 0.70 -0.74 16 29 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.83 7.66 -2.38 -0.02 0.81 16 33 H 0.07 0.82 7.66 -2.39 -0.02 0.81 16 34 H 0.15 2.61 6.30 -2.91 -0.02 2.60 16 35 H 0.43 10.37 8.30 -92.71 -0.77 9.60 16 36 H 0.41 16.17 8.01 -92.71 -0.74 15.43 16 37 H 0.27 14.04 8.31 -92.70 -0.77 13.27 16 38 H 0.08 4.21 5.95 -2.39 -0.01 4.19 16 39 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.04 1.63 5.64 -2.39 -0.01 1.62 16 42 H 0.04 1.63 7.85 -2.38 -0.02 1.61 16 43 H 0.12 3.54 6.42 -2.91 -0.02 3.52 16 44 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 45 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 46 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 47 H 0.07 1.01 7.52 -2.39 -0.02 0.99 16 Total: -1.00 -62.93 385.32 2.46 -60.47 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.50 Total: 35.82 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.49 Total: 8.41 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -3.62 Total: -99.76 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -0.94 Total: -48.63 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -62.93 2.46 -60.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275857314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.829 kcal (2) G-P(sol) polarization free energy of solvation -62.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds