Wall clock time and date at job start Tue Mar 31 2020 18:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46807 * 2 1 4 4 H 1.08995 * 109.47350 * 305.00477 * 3 2 1 5 5 C 1.53005 * 109.47071 * 185.00167 * 3 2 1 6 6 O 1.42896 * 109.47029 * 65.00248 * 3 2 1 7 7 C 1.35902 * 117.00071 * 205.07112 * 6 3 2 8 8 C 1.38820 * 120.01725 * 354.71687 * 7 6 3 9 9 C 1.38177 * 120.09550 * 180.02562 * 8 7 6 10 10 C 1.38147 * 120.13453 * 0.26024 * 9 8 7 11 11 C 1.38954 * 120.03019 * 359.48713 * 10 9 8 12 12 N 1.39717 * 120.04648 * 180.25304 * 11 10 9 13 13 C 1.34779 * 119.99865 * 216.25869 * 12 11 10 14 14 O 1.21369 * 120.00422 * 355.21345 * 13 12 11 15 15 C 1.49361 * 119.99727 * 175.20221 * 13 12 11 16 16 O 1.21358 * 119.99769 * 0.02562 * 15 13 12 17 17 N 1.34773 * 119.99688 * 180.02562 * 15 13 12 18 18 C 1.46495 * 119.99665 * 180.02562 * 17 15 13 19 19 H 1.09005 * 109.47750 * 34.99947 * 18 17 15 20 20 C 1.53006 * 109.47224 * 274.99659 * 18 17 15 21 21 C 1.50702 * 109.47392 * 154.99815 * 18 17 15 22 22 H 1.08002 * 119.99696 * 359.97438 * 21 18 17 23 23 C 1.37871 * 120.00513 * 179.97438 * 21 18 17 24 24 N 1.31523 * 119.99919 * 0.02562 * 23 21 18 25 25 Si 1.86802 * 120.00477 * 179.97438 * 23 21 18 26 26 H 1.48505 * 109.46604 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46889 * 119.99893 * 25 23 21 28 28 H 1.48494 * 109.47438 * 240.00013 * 25 23 21 29 29 C 1.38567 * 120.01918 * 174.74565 * 7 6 3 30 30 H 1.08998 * 109.47665 * 59.99761 * 1 2 3 31 31 H 1.08995 * 109.46847 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47062 * 299.99511 * 1 2 3 33 33 H 1.08997 * 109.46991 * 240.00786 * 2 1 3 34 34 H 1.08996 * 109.47480 * 119.99732 * 2 1 3 35 35 H 1.08998 * 109.47063 * 60.00219 * 5 3 2 36 36 H 1.08997 * 109.46745 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.46824 * 299.99819 * 5 3 2 38 38 H 1.08000 * 119.94688 * 0.02562 * 8 7 6 39 39 H 1.08005 * 119.93071 * 179.97438 * 9 8 7 40 40 H 1.08000 * 119.98634 * 179.72313 * 10 9 8 41 41 H 0.97004 * 119.99908 * 36.26860 * 12 11 10 42 42 H 0.96997 * 120.00311 * 0.02562 * 17 15 13 43 43 H 1.08994 * 109.46783 * 300.00064 * 20 18 17 44 44 H 1.09002 * 109.46981 * 60.00092 * 20 18 17 45 45 H 1.09002 * 109.47283 * 179.97438 * 20 18 17 46 46 H 0.96996 * 119.99968 * 180.02562 * 24 23 21 47 47 H 1.08000 * 120.06366 * 359.94758 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4445 -0.1258 6 8 1.6619 2.0814 1.2210 7 6 1.5505 3.4357 1.2001 8 6 1.9056 4.1442 0.0603 9 6 1.7935 5.5212 0.0375 10 6 1.3329 6.1981 1.1501 11 6 0.9710 5.4940 2.2921 12 7 0.5001 6.1778 3.4158 13 6 0.8191 5.7440 4.6513 14 8 1.4418 4.7115 4.7901 15 6 0.4065 6.5341 5.8498 16 8 -0.2163 7.5664 5.7111 17 7 0.7259 6.1006 7.0853 18 6 0.3207 6.8752 8.2608 19 1 -0.6502 7.3350 8.0761 20 6 1.3579 7.9662 8.5350 21 6 0.2247 5.9618 9.4557 22 1 0.4432 4.9095 9.3498 23 6 -0.1421 6.4696 10.6839 24 7 -0.4087 7.7510 10.8127 25 14 -0.2618 5.3373 12.1648 26 1 0.0854 3.9519 11.7579 27 1 0.6821 5.7954 13.2157 28 1 -1.6474 5.3646 12.6981 29 6 1.0830 4.1102 2.3166 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8532 0.9572 -1.0572 36 1 3.9281 2.4722 -0.1253 37 1 3.9994 0.9055 0.7161 38 1 2.2700 3.6182 -0.8097 39 1 2.0710 6.0698 -0.8506 40 1 1.2505 7.2748 1.1312 41 1 -0.0565 6.9648 3.3067 42 1 1.2241 5.2757 7.1962 43 1 2.3286 7.5064 8.7198 44 1 1.4273 8.6269 7.6708 45 1 1.0561 8.5429 9.4094 46 1 -0.6664 8.1083 11.6769 47 1 0.8060 3.5606 3.2041 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275991185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:32 Heat of formation + Delta-G solvation = -89.741774 kcal Electronic energy + Delta-G solvation = -28135.883358 eV Core-core repulsion = 24090.964040 eV Total energy + Delta-G solvation = -4044.919318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96648 -40.11738 -38.57329 -37.52164 -35.35088 -34.71645 -34.14976 -32.42132 -30.82684 -29.95137 -29.57557 -29.07683 -25.37682 -24.98421 -24.34528 -22.98025 -22.65864 -21.20916 -20.40880 -19.64863 -18.97452 -18.25043 -16.68813 -16.48328 -16.26696 -15.93324 -15.76518 -15.47249 -15.19800 -15.07545 -14.42828 -14.27332 -14.07668 -13.77654 -13.64560 -13.48814 -13.37882 -13.20095 -12.76175 -12.50150 -12.28923 -12.12407 -11.85095 -11.82255 -11.67611 -11.42373 -11.22137 -11.13550 -11.05041 -11.01082 -10.86036 -10.75730 -10.36063 -10.29169 -10.26317 -9.16093 -9.08783 -8.63879 -8.55823 -8.20047 -8.14116 -6.18298 -4.27777 1.01190 1.30870 1.87639 2.59288 3.01127 3.22797 3.30865 3.34908 3.53948 3.75679 4.08635 4.29588 4.33539 4.51051 4.61872 4.69652 4.84394 4.94657 5.02013 5.06397 5.10307 5.15024 5.19566 5.21101 5.32383 5.38132 5.50264 5.59649 5.67133 5.75272 5.81538 5.96236 6.07332 6.12422 6.23638 6.29946 6.67685 6.71148 6.83560 7.00830 7.07671 7.20495 7.31170 7.39354 7.61295 7.76467 7.89943 8.03976 8.41980 8.59650 8.83925 9.39367 10.87810 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002296 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.594501 B =12191.916306 C =13418.795764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.080 3.920 4 H 0.074 0.926 5 C -0.182 4.182 6 O -0.304 6.304 7 C 0.150 3.850 8 C -0.228 4.228 9 C -0.063 4.063 10 C -0.180 4.180 11 C 0.187 3.813 12 N -0.652 5.652 13 C 0.507 3.493 14 O -0.500 6.500 15 C 0.495 3.505 16 O -0.535 6.535 17 N -0.667 5.667 18 C 0.261 3.739 19 H 0.055 0.945 20 C -0.149 4.149 21 C -0.536 4.536 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.883 5.883 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.282 1.282 28 H -0.282 1.282 29 C -0.156 4.156 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.425 0.575 42 H 0.403 0.597 43 H 0.030 0.970 44 H 0.016 0.984 45 H 0.095 0.905 46 H 0.265 0.735 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -9.585 -24.940 27.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C 0.024 3.976 4 H 0.092 0.908 5 C -0.239 4.239 6 O -0.218 6.218 7 C 0.104 3.896 8 C -0.247 4.247 9 C -0.081 4.081 10 C -0.201 4.201 11 C 0.092 3.908 12 N -0.299 5.299 13 C 0.290 3.710 14 O -0.373 6.373 15 C 0.274 3.726 16 O -0.414 6.414 17 N -0.316 5.316 18 C 0.160 3.840 19 H 0.073 0.927 20 C -0.207 4.207 21 C -0.574 4.574 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.521 5.521 25 Si 0.732 3.268 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.176 4.176 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.263 0.737 42 H 0.237 0.763 43 H 0.049 0.951 44 H 0.035 0.965 45 H 0.113 0.887 46 H 0.075 0.925 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.621 -9.565 -24.492 26.696 hybrid contribution 0.063 -0.424 0.585 0.725 sum 4.684 -9.989 -23.906 26.329 Atomic orbital electron populations 1.21768 0.95048 1.01935 1.02475 1.21638 0.96938 0.93880 1.03212 1.22517 0.95047 0.93985 0.86043 0.90833 1.22393 0.95257 1.03295 1.02961 1.86150 1.83579 1.16635 1.35396 1.18709 0.94650 0.82625 0.93603 1.21242 1.09581 0.95345 0.98575 1.20670 0.96609 0.93352 0.97495 1.20865 1.05556 1.00077 0.93560 1.17412 0.96267 0.90399 0.86747 1.43226 1.51314 1.31680 1.03676 1.21017 0.79449 0.85742 0.84772 1.90748 1.37659 1.22812 1.86071 1.19637 0.82369 0.86029 0.84585 1.90729 1.40644 1.24033 1.85970 1.46509 1.52994 1.26772 1.05312 1.18998 0.95146 0.89778 0.80053 0.92750 1.22101 0.98301 0.98998 1.01322 1.21231 1.48358 0.94860 0.92947 0.91667 1.24882 0.94551 0.95323 0.98877 1.69904 1.45296 1.11975 1.24881 0.86336 0.77795 0.80688 0.81991 1.19588 1.20798 1.20810 1.20469 1.05784 0.92415 0.98977 0.92871 0.92418 0.91772 0.90132 0.90639 0.91089 0.91658 0.91274 0.85388 0.85405 0.85286 0.73675 0.76278 0.95074 0.96451 0.88690 0.92500 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.81 37.16 0.36 -0.77 16 2 C -0.12 -0.82 5.64 -26.73 -0.15 -0.97 16 3 C 0.08 0.65 2.22 -26.72 -0.06 0.60 16 4 H 0.07 0.53 6.29 -51.93 -0.33 0.20 16 5 C -0.18 -1.29 9.18 37.16 0.34 -0.95 16 6 O -0.30 -3.61 9.33 -19.43 -0.18 -3.79 16 7 C 0.15 1.86 6.60 -39.24 -0.26 1.61 16 8 C -0.23 -2.27 8.25 -39.39 -0.32 -2.60 16 9 C -0.06 -0.58 10.03 -39.64 -0.40 -0.98 16 10 C -0.18 -1.93 9.97 -39.35 -0.39 -2.32 16 11 C 0.19 2.49 6.28 -83.77 -0.53 1.97 16 12 N -0.65 -9.23 5.31 -10.31 -0.05 -9.28 16 13 C 0.51 8.78 7.73 -11.63 -0.09 8.69 16 14 O -0.50 -9.35 13.96 5.48 0.08 -9.28 16 15 C 0.50 9.95 7.85 -11.63 -0.09 9.86 16 16 O -0.53 -11.75 16.14 5.49 0.09 -11.66 16 17 N -0.67 -14.36 5.06 -55.39 -0.28 -14.64 16 18 C 0.26 6.56 2.56 -69.08 -0.18 6.38 16 19 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 20 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 21 C -0.54 -14.14 8.73 -34.44 -0.30 -14.44 16 22 H 0.07 1.67 7.74 -52.49 -0.41 1.27 16 23 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 24 N -0.88 -24.41 11.32 55.43 0.63 -23.79 16 25 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 C -0.16 -2.24 8.63 -39.23 -0.34 -2.57 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.50 6.94 -51.93 -0.36 0.14 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.13 0.98 5.43 -52.49 -0.28 0.70 16 39 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.42 5.26 8.30 -40.82 -0.34 4.92 16 42 H 0.40 8.12 8.01 -40.82 -0.33 7.79 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.15 2.40 6.29 -52.49 -0.33 2.07 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -30.32 390.04 -7.87 -38.19 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.85 Total: 10.89 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -2.15 Total: 1.90 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.29 Total: -47.71 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.02 Total: -24.72 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.32 -7.87 -38.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275991185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.552 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds