Wall clock time and date at job start Tue Mar 31 2020 18:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46807 * 2 1 4 4 H 1.08995 * 109.47350 * 305.00477 * 3 2 1 5 5 C 1.53005 * 109.47071 * 185.00167 * 3 2 1 6 6 O 1.42896 * 109.47029 * 65.00248 * 3 2 1 7 7 C 1.35902 * 117.00071 * 205.07112 * 6 3 2 8 8 C 1.38820 * 120.01725 * 354.71687 * 7 6 3 9 9 C 1.38177 * 120.09550 * 180.02562 * 8 7 6 10 10 C 1.38147 * 120.13453 * 0.26024 * 9 8 7 11 11 C 1.38954 * 120.03019 * 359.48713 * 10 9 8 12 12 N 1.39717 * 120.04648 * 180.25304 * 11 10 9 13 13 C 1.34779 * 119.99865 * 216.25869 * 12 11 10 14 14 O 1.21369 * 120.00422 * 355.21345 * 13 12 11 15 15 C 1.49361 * 119.99727 * 175.20221 * 13 12 11 16 16 O 1.21358 * 119.99769 * 0.02562 * 15 13 12 17 17 N 1.34773 * 119.99688 * 180.02562 * 15 13 12 18 18 C 1.46495 * 119.99665 * 180.02562 * 17 15 13 19 19 H 1.09005 * 109.47750 * 34.99947 * 18 17 15 20 20 C 1.53006 * 109.47224 * 274.99659 * 18 17 15 21 21 C 1.50702 * 109.47392 * 154.99815 * 18 17 15 22 22 H 1.08002 * 119.99696 * 359.97438 * 21 18 17 23 23 C 1.37871 * 120.00513 * 179.97438 * 21 18 17 24 24 N 1.31523 * 119.99919 * 0.02562 * 23 21 18 25 25 Si 1.86802 * 120.00477 * 179.97438 * 23 21 18 26 26 H 1.48505 * 109.46604 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46889 * 119.99893 * 25 23 21 28 28 H 1.48494 * 109.47438 * 240.00013 * 25 23 21 29 29 C 1.38567 * 120.01918 * 174.74565 * 7 6 3 30 30 H 1.08998 * 109.47665 * 59.99761 * 1 2 3 31 31 H 1.08995 * 109.46847 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47062 * 299.99511 * 1 2 3 33 33 H 1.08997 * 109.46991 * 240.00786 * 2 1 3 34 34 H 1.08996 * 109.47480 * 119.99732 * 2 1 3 35 35 H 1.08998 * 109.47063 * 60.00219 * 5 3 2 36 36 H 1.08997 * 109.46745 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.46824 * 299.99819 * 5 3 2 38 38 H 1.08000 * 119.94688 * 0.02562 * 8 7 6 39 39 H 1.08005 * 119.93071 * 179.97438 * 9 8 7 40 40 H 1.08000 * 119.98634 * 179.72313 * 10 9 8 41 41 H 0.97004 * 119.99908 * 36.26860 * 12 11 10 42 42 H 0.96997 * 120.00311 * 0.02562 * 17 15 13 43 43 H 1.08994 * 109.46783 * 300.00064 * 20 18 17 44 44 H 1.09002 * 109.46981 * 60.00092 * 20 18 17 45 45 H 1.09002 * 109.47283 * 179.97438 * 20 18 17 46 46 H 0.96996 * 119.99968 * 180.02562 * 24 23 21 47 47 H 1.08000 * 120.06366 * 359.94758 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4445 -0.1258 6 8 1.6619 2.0814 1.2210 7 6 1.5505 3.4357 1.2001 8 6 1.9056 4.1442 0.0603 9 6 1.7935 5.5212 0.0375 10 6 1.3329 6.1981 1.1501 11 6 0.9710 5.4940 2.2921 12 7 0.5001 6.1778 3.4158 13 6 0.8191 5.7440 4.6513 14 8 1.4418 4.7115 4.7901 15 6 0.4065 6.5341 5.8498 16 8 -0.2163 7.5664 5.7111 17 7 0.7259 6.1006 7.0853 18 6 0.3207 6.8752 8.2608 19 1 -0.6502 7.3350 8.0761 20 6 1.3579 7.9662 8.5350 21 6 0.2247 5.9618 9.4557 22 1 0.4432 4.9095 9.3498 23 6 -0.1421 6.4696 10.6839 24 7 -0.4087 7.7510 10.8127 25 14 -0.2618 5.3373 12.1648 26 1 0.0854 3.9519 11.7579 27 1 0.6821 5.7954 13.2157 28 1 -1.6474 5.3646 12.6981 29 6 1.0830 4.1102 2.3166 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8532 0.9572 -1.0572 36 1 3.9281 2.4722 -0.1253 37 1 3.9994 0.9055 0.7161 38 1 2.2700 3.6182 -0.8097 39 1 2.0710 6.0698 -0.8506 40 1 1.2505 7.2748 1.1312 41 1 -0.0565 6.9648 3.3067 42 1 1.2241 5.2757 7.1962 43 1 2.3286 7.5064 8.7198 44 1 1.4273 8.6269 7.6708 45 1 1.0561 8.5429 9.4094 46 1 -0.6664 8.1083 11.6769 47 1 0.8060 3.5606 3.2041 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275991185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:31 Heat of formation + Delta-G solvation = -109.172047 kcal Electronic energy + Delta-G solvation = -28136.725918 eV Core-core repulsion = 24090.964040 eV Total energy + Delta-G solvation = -4045.761878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.18276 -41.16800 -39.97977 -38.63540 -37.05130 -35.89799 -34.97870 -34.34403 -31.63695 -31.12404 -30.64555 -30.39978 -27.40196 -26.41507 -24.97231 -24.07995 -23.49062 -22.63711 -21.50972 -21.17297 -20.26921 -19.40099 -18.18684 -17.91514 -17.35235 -17.05501 -16.99646 -16.94591 -16.46269 -16.23445 -15.93155 -15.25660 -15.12572 -14.98197 -14.59616 -14.51389 -14.45177 -14.31769 -14.18288 -13.78714 -13.49817 -13.13113 -13.05512 -12.92585 -12.87353 -12.76608 -12.68390 -12.57443 -12.32548 -12.22051 -12.12351 -12.00310 -11.79729 -11.51423 -11.22111 -11.16885 -10.71158 -10.61779 -10.01906 -9.54452 -9.08519 -8.22086 -6.39276 -0.08898 0.43843 0.55767 1.26435 1.43397 1.45492 1.57410 2.08253 2.19562 2.38535 2.74808 2.77050 3.08737 3.44027 3.71407 3.88139 3.97354 4.01535 4.14384 4.20894 4.27484 4.40620 4.49683 4.56148 4.64351 4.66911 4.67906 4.82248 4.86746 4.96673 4.99382 5.05813 5.15694 5.18610 5.21426 5.23969 5.27714 5.30544 5.39387 5.41680 5.45313 5.57721 5.72527 5.78773 5.97672 6.01522 6.50020 6.51576 6.62424 6.74093 7.02475 7.32808 8.84336 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002296 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.594501 B =12191.916306 C =13418.795764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.072 3.928 4 H 0.089 0.911 5 C -0.179 4.179 6 O -0.328 6.328 7 C 0.139 3.861 8 C -0.218 4.218 9 C -0.053 4.053 10 C -0.175 4.175 11 C 0.162 3.838 12 N -0.634 5.634 13 C 0.516 3.484 14 O -0.518 6.518 15 C 0.497 3.503 16 O -0.555 6.555 17 N -0.670 5.670 18 C 0.267 3.733 19 H 0.017 0.983 20 C -0.136 4.136 21 C -0.552 4.552 22 H 0.069 0.931 23 C 0.020 3.980 24 N -0.912 5.912 25 Si 0.972 3.028 26 H -0.265 1.265 27 H -0.276 1.276 28 H -0.280 1.280 29 C -0.184 4.184 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.156 0.844 39 H 0.169 0.831 40 H 0.152 0.848 41 H 0.433 0.567 42 H 0.409 0.591 43 H 0.039 0.961 44 H 0.021 0.979 45 H 0.075 0.925 46 H 0.268 0.732 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -10.315 -27.675 30.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.016 3.984 4 H 0.107 0.893 5 C -0.236 4.236 6 O -0.242 6.242 7 C 0.093 3.907 8 C -0.236 4.236 9 C -0.071 4.071 10 C -0.195 4.195 11 C 0.069 3.931 12 N -0.282 5.282 13 C 0.298 3.702 14 O -0.392 6.392 15 C 0.277 3.723 16 O -0.434 6.434 17 N -0.320 5.320 18 C 0.165 3.835 19 H 0.034 0.966 20 C -0.195 4.195 21 C -0.590 4.590 22 H 0.087 0.913 23 C -0.181 4.181 24 N -0.550 5.550 25 Si 0.797 3.203 26 H -0.189 1.189 27 H -0.202 1.202 28 H -0.206 1.206 29 C -0.205 4.205 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.127 0.873 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.174 0.826 39 H 0.186 0.814 40 H 0.170 0.830 41 H 0.273 0.727 42 H 0.245 0.755 43 H 0.058 0.942 44 H 0.040 0.960 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.698 -10.301 -27.281 29.713 hybrid contribution -0.284 -0.220 1.268 1.318 sum 5.414 -10.521 -26.013 28.578 Atomic orbital electron populations 1.21764 0.95581 1.02293 1.01584 1.21690 0.96455 0.93374 1.04000 1.22840 0.95945 0.94405 0.85166 0.89327 1.22386 0.94214 1.03144 1.03835 1.86139 1.83771 1.16616 1.37707 1.18820 0.94852 0.83129 0.93867 1.21589 1.07926 0.95850 0.98278 1.21160 0.94659 0.93190 0.98120 1.21178 1.04396 1.01262 0.92679 1.17618 0.98108 0.90244 0.87176 1.43043 1.50605 1.31562 1.02962 1.20309 0.79763 0.85230 0.84890 1.90755 1.38874 1.23341 1.86278 1.20063 0.81381 0.85816 0.85031 1.90708 1.41279 1.25018 1.86426 1.46282 1.53586 1.26907 1.05192 1.18651 0.93617 0.90089 0.81117 0.96561 1.21929 0.98361 0.98650 1.00555 1.21506 1.48666 0.95220 0.93648 0.91305 1.25725 0.94015 0.96720 1.01619 1.70021 1.45717 1.13541 1.25688 0.85292 0.77742 0.78903 0.78389 1.18937 1.20155 1.20596 1.20380 1.07953 0.93117 0.99055 0.91923 0.91484 0.94439 0.87308 0.91799 0.88380 0.92101 0.92559 0.82608 0.81391 0.82991 0.72717 0.75482 0.94182 0.95983 0.90681 0.92261 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.81 71.98 0.71 -1.44 16 2 C -0.12 -1.45 5.64 30.60 0.17 -1.28 16 3 C 0.07 1.05 2.22 30.60 0.07 1.11 16 4 H 0.09 1.00 6.29 -2.39 -0.02 0.99 16 5 C -0.18 -2.14 9.18 71.98 0.66 -1.48 16 6 O -0.33 -7.80 9.33 -92.45 -0.86 -8.67 16 7 C 0.14 3.39 6.60 22.49 0.15 3.54 16 8 C -0.22 -3.70 8.25 22.39 0.18 -3.52 16 9 C -0.05 -0.78 10.03 22.23 0.22 -0.56 16 10 C -0.18 -3.31 9.97 22.42 0.22 -3.08 16 11 C 0.16 4.27 6.28 38.20 0.24 4.51 16 12 N -0.63 -18.06 5.31 -304.88 -1.62 -19.68 16 13 C 0.52 18.34 7.73 87.24 0.67 19.02 16 14 O -0.52 -20.12 13.96 -3.31 -0.05 -20.16 16 15 C 0.50 20.55 7.85 87.24 0.68 21.24 16 16 O -0.55 -24.98 16.14 -3.27 -0.05 -25.04 16 17 N -0.67 -29.73 5.06 -447.52 -2.27 -31.99 16 18 C 0.27 13.86 2.56 44.25 0.11 13.98 16 19 H 0.02 0.97 7.58 -2.38 -0.02 0.95 16 20 C -0.14 -6.79 9.26 71.98 0.67 -6.13 16 21 C -0.55 -29.64 8.73 25.60 0.22 -29.42 16 22 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 23 C 0.02 1.07 5.30 84.65 0.45 1.52 16 24 N -0.91 -51.27 11.32 21.45 0.24 -51.03 16 25 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 28 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 29 C -0.18 -5.44 8.63 22.50 0.19 -5.25 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 0.71 7.82 -2.38 -0.02 0.69 16 33 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.78 6.94 -2.39 -0.02 0.77 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.16 1.74 5.43 -2.91 -0.02 1.72 16 39 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 41 H 0.43 10.62 8.30 -92.71 -0.77 9.85 16 42 H 0.41 16.98 8.01 -92.71 -0.74 16.24 16 43 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 4.05 6.07 -2.39 -0.01 4.04 16 46 H 0.27 14.18 8.31 -92.71 -0.77 13.40 16 47 H 0.12 4.08 6.29 -2.91 -0.02 4.07 16 Total: -1.00 -67.92 390.04 2.55 -65.37 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.50 Total: 34.09 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 5.63 Total: 12.76 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -3.64 Total: -102.70 kcal Atomic # 8 Polarization: -52.91 SS G_CDS: -0.96 Total: -53.87 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -67.92 2.55 -65.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275991185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.801 kcal (2) G-P(sol) polarization free energy of solvation -67.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds