Wall clock time and date at job start Tue Mar 31 2020 18:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47499 * 2 1 4 4 H 1.09004 * 109.47266 * 54.99578 * 3 2 1 5 5 C 1.53003 * 109.47363 * 174.99707 * 3 2 1 6 6 O 1.42895 * 109.47012 * 294.99914 * 3 2 1 7 7 C 1.35902 * 117.00050 * 155.95208 * 6 3 2 8 8 C 1.38816 * 120.01601 * 355.56524 * 7 6 3 9 9 C 1.38179 * 120.09516 * 180.28147 * 8 7 6 10 10 C 1.38152 * 120.13278 * 359.48444 * 9 8 7 11 11 C 1.38947 * 120.02964 * 0.51728 * 10 9 8 12 12 N 1.39726 * 120.04751 * 179.72285 * 11 10 9 13 13 C 1.34779 * 119.99546 * 215.23080 * 12 11 10 14 14 O 1.21369 * 120.00385 * 355.80419 * 13 12 11 15 15 C 1.49359 * 119.99508 * 175.80233 * 13 12 11 16 16 O 1.21361 * 120.00186 * 0.02562 * 15 13 12 17 17 N 1.34769 * 119.99896 * 179.97438 * 15 13 12 18 18 C 1.46502 * 120.00114 * 179.97438 * 17 15 13 19 19 H 1.08996 * 109.47005 * 325.00480 * 18 17 15 20 20 C 1.53001 * 109.46974 * 85.00540 * 18 17 15 21 21 C 1.50703 * 109.47383 * 205.00354 * 18 17 15 22 22 H 1.07999 * 119.99793 * 359.97438 * 21 18 17 23 23 C 1.37877 * 120.00027 * 180.02562 * 21 18 17 24 24 N 1.31509 * 120.00071 * 359.97438 * 23 21 18 25 25 Si 1.86795 * 119.99943 * 180.02562 * 23 21 18 26 26 H 1.48498 * 109.47245 * 59.99452 * 25 23 21 27 27 H 1.48498 * 109.47426 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47254 * 299.99538 * 25 23 21 29 29 C 1.38572 * 120.01624 * 175.59219 * 7 6 3 30 30 H 1.09010 * 109.46608 * 59.99828 * 1 2 3 31 31 H 1.08993 * 109.47384 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47159 * 300.00723 * 1 2 3 33 33 H 1.09003 * 109.47482 * 240.00170 * 2 1 3 34 34 H 1.09001 * 109.47177 * 120.00281 * 2 1 3 35 35 H 1.09008 * 109.46770 * 60.00132 * 5 3 2 36 36 H 1.08995 * 109.47069 * 179.97438 * 5 3 2 37 37 H 1.08997 * 109.47150 * 300.00439 * 5 3 2 38 38 H 1.08001 * 119.95203 * 359.97438 * 8 7 6 39 39 H 1.08005 * 119.93898 * 179.72229 * 9 8 7 40 40 H 1.08001 * 119.98557 * 180.28081 * 10 9 8 41 41 H 0.96998 * 119.99762 * 35.23429 * 12 11 10 42 42 H 0.97004 * 120.00137 * 0.02562 * 17 15 13 43 43 H 1.08998 * 109.47032 * 180.02562 * 20 18 17 44 44 H 1.09007 * 109.47047 * 299.99951 * 20 18 17 45 45 H 1.08996 * 109.47759 * 59.99844 * 20 18 17 46 46 H 0.96998 * 120.00356 * 180.02562 * 24 23 21 47 47 H 1.07991 * 120.06684 * 359.94917 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4443 0.1258 6 8 1.6621 2.0813 -1.2210 7 6 1.5717 3.4372 -1.2057 8 6 1.7512 4.1317 -0.0172 9 6 1.6539 5.5100 0.0014 10 6 1.3882 6.2023 -1.1642 11 6 1.2075 5.5126 -2.3568 12 7 0.9331 6.2120 -3.5349 13 6 0.1061 5.6806 -4.4569 14 8 -0.3400 4.5628 -4.2998 15 6 -0.2615 6.4673 -5.6722 16 8 0.1849 7.5848 -5.8295 17 7 -1.0880 5.9358 -6.5944 18 6 -1.4491 6.7076 -7.7861 19 1 -1.5258 7.7633 -7.5258 20 6 -0.3730 6.5237 -8.8582 21 6 -2.7741 6.2233 -8.3161 22 1 -3.2949 5.4204 -7.8155 23 6 -3.3208 6.8043 -9.4406 24 7 -2.6863 7.7815 -10.0504 25 14 -4.9635 6.2044 -10.0970 26 1 -6.0077 6.3839 -9.0566 27 1 -5.3294 6.9866 -11.3051 28 1 -4.8596 4.7659 -10.4510 29 6 1.2997 4.1271 -2.3762 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9995 0.9052 -0.7161 36 1 3.9283 2.4718 0.1253 37 1 3.8532 0.9569 1.0571 38 1 1.9623 3.5937 0.8952 39 1 1.7896 6.0475 0.9283 40 1 1.3172 7.2798 -1.1478 41 1 1.3379 7.0799 -3.6891 42 1 -1.4446 5.0424 -6.4688 43 1 -0.6414 7.0983 -9.7446 44 1 0.5854 6.8741 -8.4749 45 1 -0.2961 5.4681 -9.1185 46 1 -3.0711 8.1906 -10.8413 47 1 1.1601 3.5885 -3.3018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275991186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:34 Heat of formation + Delta-G solvation = -88.650393 kcal Electronic energy + Delta-G solvation = -28147.679545 eV Core-core repulsion = 24102.807553 eV Total energy + Delta-G solvation = -4044.871993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96897 -40.11663 -38.57404 -37.52187 -35.35145 -34.71483 -34.14484 -32.42168 -30.78237 -29.96759 -29.57870 -29.08168 -25.37633 -25.00721 -24.34338 -23.00170 -22.65308 -21.20038 -20.37627 -19.64340 -18.99388 -18.24706 -16.69609 -16.47929 -16.26896 -15.99004 -15.58279 -15.48242 -15.39295 -14.99947 -14.40990 -14.27879 -14.01300 -13.79079 -13.70126 -13.50601 -13.36373 -13.18520 -12.67381 -12.49041 -12.37075 -12.07416 -11.97188 -11.81658 -11.68302 -11.42466 -11.21807 -11.11308 -11.01915 -11.00127 -10.83146 -10.72248 -10.38198 -10.30681 -10.27295 -9.17097 -9.09300 -8.63166 -8.54956 -8.20125 -8.13276 -6.17818 -4.27534 1.01240 1.31152 1.87893 2.58900 3.01381 3.25470 3.30105 3.32607 3.53826 3.75847 4.08543 4.29254 4.33585 4.51384 4.59254 4.69592 4.85420 4.97620 5.01855 5.06296 5.10309 5.15263 5.20362 5.21550 5.32460 5.38198 5.50647 5.61937 5.67715 5.74157 5.81034 6.00256 6.07027 6.12846 6.23706 6.30118 6.67599 6.71268 6.83606 7.00868 7.07712 7.20551 7.31166 7.39365 7.61027 7.76521 7.89819 8.04190 8.41995 8.59467 8.83703 9.39446 10.88183 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.002280 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.018151 B =12277.613552 C =13352.502602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.075 0.925 5 C -0.180 4.180 6 O -0.304 6.304 7 C 0.151 3.849 8 C -0.229 4.229 9 C -0.061 4.061 10 C -0.181 4.181 11 C 0.187 3.813 12 N -0.651 5.651 13 C 0.507 3.493 14 O -0.500 6.500 15 C 0.495 3.505 16 O -0.535 6.535 17 N -0.667 5.667 18 C 0.262 3.738 19 H 0.054 0.946 20 C -0.149 4.149 21 C -0.537 4.537 22 H 0.064 0.936 23 C 0.068 3.932 24 N -0.883 5.883 25 Si 0.905 3.095 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 C -0.157 4.157 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.425 0.575 42 H 0.403 0.597 43 H 0.095 0.905 44 H 0.016 0.984 45 H 0.030 0.970 46 H 0.266 0.734 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.408 -10.119 22.371 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.093 0.907 5 C -0.237 4.237 6 O -0.218 6.218 7 C 0.105 3.895 8 C -0.249 4.249 9 C -0.080 4.080 10 C -0.202 4.202 11 C 0.092 3.908 12 N -0.298 5.298 13 C 0.290 3.710 14 O -0.373 6.373 15 C 0.274 3.726 16 O -0.414 6.414 17 N -0.316 5.316 18 C 0.161 3.839 19 H 0.072 0.928 20 C -0.207 4.207 21 C -0.576 4.576 22 H 0.082 0.918 23 C -0.136 4.136 24 N -0.520 5.520 25 Si 0.732 3.268 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.200 1.200 29 C -0.178 4.178 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.263 0.737 42 H 0.237 0.763 43 H 0.113 0.887 44 H 0.036 0.964 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.280 -10.108 21.917 26.641 hybrid contribution -0.769 -0.192 -0.146 0.806 sum 10.512 -10.301 21.771 26.278 Atomic orbital electron populations 1.21774 0.94969 1.01961 1.02600 1.21627 0.97009 0.93803 1.03148 1.22539 0.94968 0.94007 0.86273 0.90726 1.22358 0.95247 1.03174 1.02915 1.86156 1.83386 1.16433 1.35775 1.18699 0.94798 0.82600 0.93416 1.21214 1.10914 0.95383 0.97352 1.20666 0.96627 0.93238 0.97487 1.20854 1.07923 1.00350 0.91025 1.17420 0.96968 0.90696 0.85673 1.43231 1.46164 1.23454 1.16992 1.21014 0.78485 0.86881 0.84599 1.90745 1.51709 1.18545 1.76283 1.19635 0.82234 0.86815 0.83939 1.90730 1.54042 1.18992 1.77616 1.46511 1.43473 1.20106 1.21493 1.18985 0.93458 0.92592 0.78859 0.92771 1.22102 0.96155 1.00144 1.02320 1.21154 1.03946 1.20357 1.12110 0.91780 1.24873 0.97949 0.94650 0.96099 1.69877 1.38432 1.23732 1.20006 0.86445 0.83181 0.78841 0.78303 1.20085 1.21082 1.20031 1.20467 1.06388 0.92494 0.98427 0.91651 0.92410 0.92868 0.90691 0.90155 0.91373 0.91770 0.91081 0.85388 0.85402 0.85277 0.73679 0.76283 0.88691 0.96448 0.95065 0.92379 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.81 37.15 0.36 -0.85 16 2 C -0.12 -0.83 5.64 -26.73 -0.15 -0.98 16 3 C 0.08 0.64 2.25 -26.73 -0.06 0.58 16 4 H 0.07 0.54 5.88 -51.93 -0.31 0.23 16 5 C -0.18 -1.21 9.31 37.16 0.35 -0.87 16 6 O -0.30 -3.60 9.34 -19.43 -0.18 -3.78 16 7 C 0.15 1.87 6.55 -39.24 -0.26 1.61 16 8 C -0.23 -2.29 8.44 -39.39 -0.33 -2.62 16 9 C -0.06 -0.58 10.03 -39.63 -0.40 -0.97 16 10 C -0.18 -1.95 9.96 -39.35 -0.39 -2.34 16 11 C 0.19 2.51 6.29 -83.77 -0.53 1.98 16 12 N -0.65 -9.22 5.32 -10.31 -0.05 -9.28 16 13 C 0.51 8.77 7.72 -11.63 -0.09 8.68 16 14 O -0.50 -9.33 13.93 5.48 0.08 -9.25 16 15 C 0.50 9.95 7.85 -11.63 -0.09 9.86 16 16 O -0.54 -11.75 16.14 5.49 0.09 -11.66 16 17 N -0.67 -14.35 5.06 -55.39 -0.28 -14.63 16 18 C 0.26 6.58 2.56 -69.08 -0.18 6.40 16 19 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 20 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 21 C -0.54 -14.20 8.73 -34.44 -0.30 -14.50 16 22 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 23 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 24 N -0.88 -24.41 11.32 55.43 0.63 -23.79 16 25 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 C -0.16 -2.25 8.63 -39.23 -0.34 -2.59 16 30 H 0.06 0.65 7.82 -51.92 -0.41 0.24 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.13 0.98 5.75 -52.49 -0.30 0.68 16 39 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.42 5.26 8.30 -40.82 -0.34 4.92 16 42 H 0.40 8.10 8.01 -40.82 -0.33 7.78 16 43 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 44 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 47 H 0.15 2.39 6.25 -52.49 -0.33 2.06 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -30.26 390.79 -7.89 -38.14 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -6.88 Total: 10.95 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.15 Total: 1.83 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.29 Total: -47.70 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.02 Total: -24.69 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.26 -7.89 -38.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275991186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.508 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds