Wall clock time and date at job start Tue Mar 31 2020 18:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47499 * 2 1 4 4 H 1.09004 * 109.47266 * 54.99578 * 3 2 1 5 5 C 1.53003 * 109.47363 * 174.99707 * 3 2 1 6 6 O 1.42895 * 109.47012 * 294.99914 * 3 2 1 7 7 C 1.35902 * 117.00050 * 155.95208 * 6 3 2 8 8 C 1.38816 * 120.01601 * 355.56524 * 7 6 3 9 9 C 1.38179 * 120.09516 * 180.28147 * 8 7 6 10 10 C 1.38152 * 120.13278 * 359.48444 * 9 8 7 11 11 C 1.38947 * 120.02964 * 0.51728 * 10 9 8 12 12 N 1.39726 * 120.04751 * 179.72285 * 11 10 9 13 13 C 1.34779 * 119.99546 * 215.23080 * 12 11 10 14 14 O 1.21369 * 120.00385 * 355.80419 * 13 12 11 15 15 C 1.49359 * 119.99508 * 175.80233 * 13 12 11 16 16 O 1.21361 * 120.00186 * 0.02562 * 15 13 12 17 17 N 1.34769 * 119.99896 * 179.97438 * 15 13 12 18 18 C 1.46502 * 120.00114 * 179.97438 * 17 15 13 19 19 H 1.08996 * 109.47005 * 325.00480 * 18 17 15 20 20 C 1.53001 * 109.46974 * 85.00540 * 18 17 15 21 21 C 1.50703 * 109.47383 * 205.00354 * 18 17 15 22 22 H 1.07999 * 119.99793 * 359.97438 * 21 18 17 23 23 C 1.37877 * 120.00027 * 180.02562 * 21 18 17 24 24 N 1.31509 * 120.00071 * 359.97438 * 23 21 18 25 25 Si 1.86795 * 119.99943 * 180.02562 * 23 21 18 26 26 H 1.48498 * 109.47245 * 59.99452 * 25 23 21 27 27 H 1.48498 * 109.47426 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47254 * 299.99538 * 25 23 21 29 29 C 1.38572 * 120.01624 * 175.59219 * 7 6 3 30 30 H 1.09010 * 109.46608 * 59.99828 * 1 2 3 31 31 H 1.08993 * 109.47384 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47159 * 300.00723 * 1 2 3 33 33 H 1.09003 * 109.47482 * 240.00170 * 2 1 3 34 34 H 1.09001 * 109.47177 * 120.00281 * 2 1 3 35 35 H 1.09008 * 109.46770 * 60.00132 * 5 3 2 36 36 H 1.08995 * 109.47069 * 179.97438 * 5 3 2 37 37 H 1.08997 * 109.47150 * 300.00439 * 5 3 2 38 38 H 1.08001 * 119.95203 * 359.97438 * 8 7 6 39 39 H 1.08005 * 119.93898 * 179.72229 * 9 8 7 40 40 H 1.08001 * 119.98557 * 180.28081 * 10 9 8 41 41 H 0.96998 * 119.99762 * 35.23429 * 12 11 10 42 42 H 0.97004 * 120.00137 * 0.02562 * 17 15 13 43 43 H 1.08998 * 109.47032 * 180.02562 * 20 18 17 44 44 H 1.09007 * 109.47047 * 299.99951 * 20 18 17 45 45 H 1.08996 * 109.47759 * 59.99844 * 20 18 17 46 46 H 0.96998 * 120.00356 * 180.02562 * 24 23 21 47 47 H 1.07991 * 120.06684 * 359.94917 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4443 0.1258 6 8 1.6621 2.0813 -1.2210 7 6 1.5717 3.4372 -1.2057 8 6 1.7512 4.1317 -0.0172 9 6 1.6539 5.5100 0.0014 10 6 1.3882 6.2023 -1.1642 11 6 1.2075 5.5126 -2.3568 12 7 0.9331 6.2120 -3.5349 13 6 0.1061 5.6806 -4.4569 14 8 -0.3400 4.5628 -4.2998 15 6 -0.2615 6.4673 -5.6722 16 8 0.1849 7.5848 -5.8295 17 7 -1.0880 5.9358 -6.5944 18 6 -1.4491 6.7076 -7.7861 19 1 -1.5258 7.7633 -7.5258 20 6 -0.3730 6.5237 -8.8582 21 6 -2.7741 6.2233 -8.3161 22 1 -3.2949 5.4204 -7.8155 23 6 -3.3208 6.8043 -9.4406 24 7 -2.6863 7.7815 -10.0504 25 14 -4.9635 6.2044 -10.0970 26 1 -6.0077 6.3839 -9.0566 27 1 -5.3294 6.9866 -11.3051 28 1 -4.8596 4.7659 -10.4510 29 6 1.2997 4.1271 -2.3762 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9995 0.9052 -0.7161 36 1 3.9283 2.4718 0.1253 37 1 3.8532 0.9569 1.0571 38 1 1.9623 3.5937 0.8952 39 1 1.7896 6.0475 0.9283 40 1 1.3172 7.2798 -1.1478 41 1 1.3379 7.0799 -3.6891 42 1 -1.4446 5.0424 -6.4688 43 1 -0.6414 7.0983 -9.7446 44 1 0.5854 6.8741 -8.4749 45 1 -0.2961 5.4681 -9.1185 46 1 -3.0711 8.1906 -10.8413 47 1 1.1601 3.5885 -3.3018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275991186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:34 Heat of formation + Delta-G solvation = -107.995565 kcal Electronic energy + Delta-G solvation = -28148.518415 eV Core-core repulsion = 24102.807553 eV Total energy + Delta-G solvation = -4045.710862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.18593 -41.16495 -39.98067 -38.63475 -37.05062 -35.90045 -34.97673 -34.34338 -31.60699 -31.12282 -30.63984 -30.41751 -27.39816 -26.42770 -24.98973 -24.09839 -23.48562 -22.64464 -21.49294 -21.14760 -20.27636 -19.40331 -18.17548 -17.93919 -17.30251 -17.09412 -17.00529 -16.92668 -16.49730 -16.24276 -15.83467 -15.38838 -15.02095 -15.00724 -14.60357 -14.55668 -14.43576 -14.29177 -14.19451 -13.76760 -13.38037 -13.16350 -13.08689 -12.92289 -12.86067 -12.77155 -12.72765 -12.64509 -12.31934 -12.22709 -12.12957 -12.03716 -11.74231 -11.43571 -11.26099 -11.19079 -10.70336 -10.61001 -10.01982 -9.53689 -9.07702 -8.21452 -6.38938 -0.09143 0.44089 0.56379 1.25903 1.45531 1.46566 1.54890 2.08002 2.20259 2.38776 2.74792 2.77034 3.09188 3.43928 3.70996 3.88595 3.94496 4.00062 4.16807 4.20939 4.28632 4.40783 4.49370 4.56490 4.64953 4.67339 4.67809 4.82741 4.86545 4.96842 4.99367 5.05537 5.15863 5.18140 5.21356 5.24000 5.27654 5.31052 5.39670 5.41732 5.45294 5.57579 5.72454 5.78669 5.97847 6.01492 6.49959 6.51645 6.62209 6.73995 7.02450 7.33001 8.84526 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.002280 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.018151 B =12277.613552 C =13352.502602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C 0.070 3.930 4 H 0.089 0.911 5 C -0.175 4.175 6 O -0.327 6.327 7 C 0.141 3.859 8 C -0.219 4.219 9 C -0.052 4.052 10 C -0.177 4.177 11 C 0.163 3.837 12 N -0.634 5.634 13 C 0.516 3.484 14 O -0.517 6.517 15 C 0.497 3.503 16 O -0.555 6.555 17 N -0.670 5.670 18 C 0.268 3.732 19 H 0.017 0.983 20 C -0.137 4.137 21 C -0.555 4.555 22 H 0.069 0.931 23 C 0.021 3.979 24 N -0.912 5.912 25 Si 0.972 3.028 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.267 1.267 29 C -0.185 4.185 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.168 0.832 40 H 0.152 0.848 41 H 0.433 0.567 42 H 0.410 0.590 43 H 0.075 0.925 44 H 0.021 0.979 45 H 0.039 0.961 46 H 0.268 0.732 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.747 -10.830 25.392 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C 0.014 3.986 4 H 0.106 0.894 5 C -0.233 4.233 6 O -0.242 6.242 7 C 0.094 3.906 8 C -0.238 4.238 9 C -0.071 4.071 10 C -0.197 4.197 11 C 0.069 3.931 12 N -0.281 5.281 13 C 0.298 3.702 14 O -0.392 6.392 15 C 0.277 3.723 16 O -0.434 6.434 17 N -0.320 5.320 18 C 0.166 3.834 19 H 0.034 0.966 20 C -0.195 4.195 21 C -0.593 4.593 22 H 0.087 0.913 23 C -0.180 4.180 24 N -0.549 5.549 25 Si 0.796 3.204 26 H -0.197 1.197 27 H -0.207 1.207 28 H -0.192 1.192 29 C -0.206 4.206 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.174 0.826 39 H 0.186 0.814 40 H 0.170 0.830 41 H 0.273 0.727 42 H 0.245 0.755 43 H 0.093 0.907 44 H 0.040 0.960 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.653 -10.827 24.982 29.616 hybrid contribution -0.787 0.009 -0.945 1.229 sum 10.866 -10.818 24.038 28.512 Atomic orbital electron populations 1.21770 0.95775 1.02267 1.01510 1.21681 0.96265 0.93410 1.04059 1.22862 0.96042 0.94330 0.85340 0.89368 1.22341 0.93995 1.03088 1.03845 1.86144 1.83575 1.16390 1.38083 1.18807 0.95013 0.83081 0.93662 1.21566 1.09056 0.95914 0.97254 1.21154 0.94477 0.93064 0.98359 1.21167 1.06700 1.01551 0.90249 1.17625 0.98951 0.90534 0.85980 1.43048 1.44828 1.23531 1.16721 1.20305 0.79335 0.86310 0.84250 1.90753 1.52876 1.18999 1.76583 1.20062 0.81185 0.86633 0.84416 1.90709 1.54526 1.19980 1.78233 1.46284 1.44271 1.20210 1.21194 1.18638 0.93712 0.90944 0.80098 0.96555 1.21934 0.96053 1.00232 1.01309 1.21451 1.04623 1.20659 1.12529 0.91273 1.25722 1.01380 0.94663 0.96275 1.70002 1.39940 1.24641 1.20338 0.85398 0.78779 0.78577 0.77614 1.19684 1.20701 1.19173 1.20382 1.08694 0.93186 0.98345 0.94609 0.91465 0.92007 0.91681 0.87257 0.92408 0.92177 0.88464 0.82584 0.81420 0.83027 0.72721 0.75476 0.90659 0.96021 0.94214 0.92242 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.81 71.98 0.71 -1.60 16 2 C -0.12 -1.46 5.64 30.59 0.17 -1.28 16 3 C 0.07 1.01 2.25 30.59 0.07 1.08 16 4 H 0.09 1.01 5.88 -2.39 -0.01 1.00 16 5 C -0.18 -1.98 9.31 71.98 0.67 -1.31 16 6 O -0.33 -7.76 9.34 -92.44 -0.86 -8.62 16 7 C 0.14 3.41 6.55 22.49 0.15 3.56 16 8 C -0.22 -3.74 8.44 22.39 0.19 -3.55 16 9 C -0.05 -0.78 10.03 22.24 0.22 -0.56 16 10 C -0.18 -3.36 9.96 22.42 0.22 -3.14 16 11 C 0.16 4.29 6.29 38.20 0.24 4.53 16 12 N -0.63 -18.06 5.32 -304.87 -1.62 -19.68 16 13 C 0.52 18.34 7.72 87.24 0.67 19.01 16 14 O -0.52 -20.07 13.93 -3.31 -0.05 -20.12 16 15 C 0.50 20.56 7.85 87.24 0.68 21.24 16 16 O -0.55 -25.01 16.14 -3.28 -0.05 -25.06 16 17 N -0.67 -29.72 5.06 -447.53 -2.27 -31.98 16 18 C 0.27 13.91 2.56 44.25 0.11 14.02 16 19 H 0.02 0.98 7.58 -2.39 -0.02 0.96 16 20 C -0.14 -6.83 9.26 71.98 0.67 -6.16 16 21 C -0.55 -29.74 8.73 25.60 0.22 -29.51 16 22 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 23 C 0.02 1.10 5.30 84.66 0.45 1.55 16 24 N -0.91 -51.26 11.32 21.45 0.24 -51.02 16 25 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 29 C -0.19 -5.46 8.63 22.50 0.19 -5.27 16 30 H 0.03 0.73 7.82 -2.38 -0.02 0.71 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.06 0.73 7.52 -2.39 -0.02 0.71 16 37 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.16 1.74 5.75 -2.91 -0.02 1.72 16 39 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.43 10.62 8.30 -92.71 -0.77 9.85 16 42 H 0.41 16.96 8.01 -92.71 -0.74 16.21 16 43 H 0.07 4.07 6.07 -2.39 -0.01 4.06 16 44 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.12 4.10 6.25 -2.92 -0.02 4.08 16 Total: -1.00 -67.78 390.79 2.56 -65.22 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: -0.50 Total: 34.40 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 5.65 Total: 12.61 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -3.64 Total: -102.68 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -0.96 Total: -53.79 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -67.78 2.56 -65.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275991186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.775 kcal (2) G-P(sol) polarization free energy of solvation -67.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds