Wall clock time and date at job start Tue Mar 31 2020 18:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46760 * 2 1 4 4 H 1.08994 * 109.47389 * 54.99800 * 3 2 1 5 5 C 1.53001 * 109.47022 * 175.00289 * 3 2 1 6 6 O 1.42904 * 109.46823 * 294.99700 * 3 2 1 7 7 C 1.35901 * 117.00152 * 155.95736 * 6 3 2 8 8 C 1.38821 * 120.01325 * 355.57249 * 7 6 3 9 9 C 1.38187 * 120.09454 * 180.02562 * 8 7 6 10 10 C 1.38148 * 120.13035 * 0.02562 * 9 8 7 11 11 C 1.38951 * 120.03414 * 359.97438 * 10 9 8 12 12 N 1.39722 * 120.04763 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99720 * 215.19814 * 12 11 10 14 14 O 1.21378 * 120.00301 * 355.80515 * 13 12 11 15 15 C 1.49355 * 119.99823 * 175.80753 * 13 12 11 16 16 O 1.21361 * 119.99966 * 359.97438 * 15 13 12 17 17 N 1.34779 * 120.00274 * 179.97438 * 15 13 12 18 18 C 1.46495 * 120.00262 * 179.97438 * 17 15 13 19 19 H 1.09004 * 109.47119 * 35.00350 * 18 17 15 20 20 C 1.52999 * 109.47286 * 275.00539 * 18 17 15 21 21 C 1.50701 * 109.46995 * 155.00452 * 18 17 15 22 22 H 1.07998 * 120.00153 * 0.02562 * 21 18 17 23 23 C 1.37885 * 119.99853 * 180.02562 * 21 18 17 24 24 N 1.31511 * 119.99833 * 0.02562 * 23 21 18 25 25 Si 1.86795 * 119.99864 * 180.02562 * 23 21 18 26 26 H 1.48499 * 109.47195 * 59.99966 * 25 23 21 27 27 H 1.48496 * 109.47211 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46814 * 299.99999 * 25 23 21 29 29 C 1.38563 * 120.02252 * 175.58572 * 7 6 3 30 30 H 1.08995 * 109.47515 * 60.00508 * 1 2 3 31 31 H 1.09005 * 109.46863 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47452 * 300.00308 * 1 2 3 33 33 H 1.09000 * 109.47306 * 240.00224 * 2 1 3 34 34 H 1.08995 * 109.47515 * 119.99492 * 2 1 3 35 35 H 1.08994 * 109.47438 * 59.99540 * 5 3 2 36 36 H 1.09000 * 109.46687 * 180.02562 * 5 3 2 37 37 H 1.08995 * 109.46898 * 299.99151 * 5 3 2 38 38 H 1.08000 * 119.95408 * 359.74308 * 8 7 6 39 39 H 1.08001 * 119.93588 * 179.97438 * 9 8 7 40 40 H 1.07990 * 119.98397 * 180.02562 * 10 9 8 41 41 H 0.97000 * 119.99903 * 35.19725 * 12 11 10 42 42 H 0.97004 * 119.99587 * 0.02562 * 17 15 13 43 43 H 1.09003 * 109.47316 * 60.00217 * 20 18 17 44 44 H 1.09004 * 109.47165 * 179.97438 * 20 18 17 45 45 H 1.08998 * 109.47549 * 300.00021 * 20 18 17 46 46 H 0.97001 * 119.99565 * 179.97438 * 24 23 21 47 47 H 1.08006 * 120.06198 * 359.96799 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5647 1.4445 0.1257 6 8 1.6618 2.0814 -1.2211 7 6 1.5713 3.4373 -1.2059 8 6 1.7510 4.1319 -0.0174 9 6 1.6588 5.5106 0.0001 10 6 1.3872 6.2023 -1.1645 11 6 1.2064 5.5125 -2.3570 12 7 0.9321 6.2118 -3.5351 13 6 0.1056 5.6802 -4.4574 14 8 -0.3403 4.5623 -4.3004 15 6 -0.2617 6.4668 -5.6728 16 8 0.1837 7.5847 -5.8296 17 7 -1.0879 5.9350 -6.5954 18 6 -1.4486 6.7068 -7.7872 19 1 -0.5980 7.3130 -8.0988 20 6 -2.6340 7.6188 -7.4648 21 6 -1.8282 5.7642 -8.9001 22 1 -1.8036 4.6970 -8.7359 23 6 -2.2069 6.2642 -10.1280 24 7 -2.2363 7.5637 -10.3281 25 14 -2.6781 5.0959 -11.5072 26 1 -3.8376 4.2709 -11.0827 27 1 -3.0424 5.8780 -12.7158 28 1 -1.5281 4.2097 -11.8198 29 6 1.2995 4.1272 -2.3764 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.9994 0.9054 -0.7161 36 1 3.9279 2.4722 0.1261 37 1 3.8531 0.9573 1.0570 38 1 1.9586 3.5937 0.8956 39 1 1.7986 6.0483 0.9262 40 1 1.3161 7.2797 -1.1481 41 1 1.3366 7.0799 -3.6892 42 1 -1.4442 5.0416 -6.4699 43 1 -2.3594 8.3006 -6.6599 44 1 -2.9021 8.1934 -8.3515 45 1 -3.4846 7.0127 -7.1532 46 1 -2.5024 7.9154 -11.1921 47 1 1.1597 3.5884 -3.3020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275991189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:40 Heat of formation + Delta-G solvation = -88.660292 kcal Electronic energy + Delta-G solvation = -28148.981406 eV Core-core repulsion = 24104.108984 eV Total energy + Delta-G solvation = -4044.872422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96844 -40.11506 -38.57351 -37.52104 -35.35133 -34.71421 -34.14414 -32.42064 -30.78159 -29.96639 -29.57923 -29.08161 -25.37597 -25.00740 -24.34166 -23.00293 -22.65226 -21.19924 -20.37271 -19.64695 -18.99324 -18.24791 -16.68940 -16.49124 -16.25639 -15.96604 -15.70335 -15.48122 -15.22672 -15.05805 -14.42205 -14.26415 -14.07112 -13.77205 -13.67914 -13.49929 -13.36915 -13.16920 -12.67775 -12.49325 -12.36829 -12.07445 -11.97333 -11.81132 -11.68875 -11.42413 -11.21835 -11.11540 -11.01578 -10.99814 -10.83098 -10.72514 -10.38483 -10.30153 -10.27205 -9.17176 -9.09248 -8.63055 -8.55096 -8.19395 -8.13948 -6.17853 -4.27508 1.01135 1.31123 1.87899 2.58953 3.01540 3.25529 3.30153 3.32629 3.53812 3.75790 4.08474 4.29443 4.33692 4.51496 4.59395 4.69520 4.85463 4.97765 5.01851 5.06286 5.10294 5.15260 5.20459 5.21778 5.32646 5.38240 5.50801 5.61960 5.67880 5.74524 5.81237 6.00258 6.06958 6.12868 6.23793 6.30096 6.67630 6.71210 6.83553 7.00865 7.07688 7.20550 7.31333 7.39333 7.61032 7.76465 7.89793 8.04090 8.42000 8.59483 8.83721 9.39449 10.88173 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015744 B = 0.002319 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.995347 B =12069.979277 C =13382.006123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.075 0.925 5 C -0.180 4.180 6 O -0.304 6.304 7 C 0.151 3.849 8 C -0.229 4.229 9 C -0.062 4.062 10 C -0.181 4.181 11 C 0.187 3.813 12 N -0.651 5.651 13 C 0.507 3.493 14 O -0.500 6.500 15 C 0.495 3.505 16 O -0.535 6.535 17 N -0.667 5.667 18 C 0.262 3.738 19 H 0.055 0.945 20 C -0.149 4.149 21 C -0.537 4.537 22 H 0.064 0.936 23 C 0.068 3.932 24 N -0.883 5.883 25 Si 0.905 3.095 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 C -0.157 4.157 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.425 0.575 42 H 0.403 0.597 43 H 0.016 0.984 44 H 0.095 0.905 45 H 0.030 0.970 46 H 0.266 0.734 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.287 -9.097 23.677 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.093 0.907 5 C -0.237 4.237 6 O -0.217 6.217 7 C 0.105 3.895 8 C -0.249 4.249 9 C -0.080 4.080 10 C -0.202 4.202 11 C 0.092 3.908 12 N -0.298 5.298 13 C 0.290 3.710 14 O -0.373 6.373 15 C 0.274 3.726 16 O -0.414 6.414 17 N -0.316 5.316 18 C 0.161 3.839 19 H 0.072 0.928 20 C -0.207 4.207 21 C -0.576 4.576 22 H 0.082 0.918 23 C -0.136 4.136 24 N -0.520 5.520 25 Si 0.732 3.268 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.201 1.201 29 C -0.178 4.178 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.263 0.737 42 H 0.237 0.763 43 H 0.035 0.965 44 H 0.113 0.887 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.133 -9.074 23.239 26.567 hybrid contribution -0.195 -0.468 -0.499 0.711 sum 8.938 -9.543 22.740 26.231 Atomic orbital electron populations 1.21773 0.94977 1.01960 1.02587 1.21628 0.97004 0.93807 1.03157 1.22540 0.94974 0.94004 0.86261 0.90732 1.22356 0.95244 1.03179 1.02919 1.86160 1.83380 1.16433 1.35771 1.18698 0.94788 0.82606 0.93410 1.21218 1.10932 0.95370 0.97346 1.20665 0.96635 0.93238 0.97495 1.20851 1.07924 1.00342 0.91047 1.17417 0.96982 0.90701 0.85661 1.43229 1.46177 1.23454 1.16973 1.21014 0.78500 0.86861 0.84609 1.90747 1.51748 1.18478 1.76318 1.19637 0.82051 0.86836 0.84101 1.90730 1.54494 1.18976 1.77177 1.46511 1.43748 1.20001 1.21323 1.18984 0.94904 0.90650 0.79354 0.92758 1.22102 0.98290 0.99131 1.01198 1.21156 1.47473 0.93004 0.95941 0.91771 1.24877 0.94838 0.95387 0.98473 1.69881 1.46763 1.11251 1.24150 0.86444 0.79050 0.80493 0.80781 1.20034 1.21083 1.20074 1.20473 1.06344 0.92509 0.98442 0.91654 0.92412 0.92875 0.90679 0.90154 0.91357 0.91769 0.91090 0.85389 0.85408 0.85293 0.73673 0.76284 0.96456 0.88699 0.95074 0.92382 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.81 37.16 0.36 -0.85 16 2 C -0.12 -0.84 5.64 -26.73 -0.15 -0.99 16 3 C 0.08 0.64 2.25 -26.73 -0.06 0.58 16 4 H 0.07 0.54 5.88 -51.93 -0.31 0.23 16 5 C -0.18 -1.22 9.31 37.16 0.35 -0.88 16 6 O -0.30 -3.61 9.34 -19.43 -0.18 -3.79 16 7 C 0.15 1.88 6.55 -39.25 -0.26 1.62 16 8 C -0.23 -2.29 8.44 -39.38 -0.33 -2.62 16 9 C -0.06 -0.57 10.03 -39.63 -0.40 -0.97 16 10 C -0.18 -1.94 9.96 -39.35 -0.39 -2.33 16 11 C 0.19 2.51 6.29 -83.77 -0.53 1.98 16 12 N -0.65 -9.22 5.32 -10.31 -0.05 -9.28 16 13 C 0.51 8.77 7.72 -11.63 -0.09 8.68 16 14 O -0.50 -9.33 13.93 5.47 0.08 -9.25 16 15 C 0.50 9.95 7.85 -11.63 -0.09 9.86 16 16 O -0.53 -11.75 16.14 5.49 0.09 -11.66 16 17 N -0.67 -14.35 5.06 -55.40 -0.28 -14.63 16 18 C 0.26 6.58 2.56 -69.08 -0.18 6.40 16 19 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 20 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 21 C -0.54 -14.19 8.73 -34.44 -0.30 -14.49 16 22 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 23 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 24 N -0.88 -24.41 11.32 55.43 0.63 -23.79 16 25 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 C -0.16 -2.26 8.63 -39.23 -0.34 -2.60 16 30 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.47 7.53 -51.93 -0.39 0.08 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.13 0.98 5.76 -52.49 -0.30 0.68 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.42 5.26 8.30 -40.82 -0.34 4.93 16 42 H 0.40 8.10 8.01 -40.82 -0.33 7.78 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.15 2.41 6.25 -52.48 -0.33 2.09 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -30.25 390.81 -7.89 -38.14 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.88 Total: 10.98 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -2.15 Total: 1.83 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.29 Total: -47.70 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.02 Total: -24.71 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.25 -7.89 -38.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275991189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.524 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds