Wall clock time and date at job start Tue Mar 31 2020 18:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46760 * 2 1 4 4 H 1.08994 * 109.47389 * 54.99800 * 3 2 1 5 5 C 1.53001 * 109.47022 * 175.00289 * 3 2 1 6 6 O 1.42904 * 109.46823 * 294.99700 * 3 2 1 7 7 C 1.35901 * 117.00152 * 155.95736 * 6 3 2 8 8 C 1.38821 * 120.01325 * 355.57249 * 7 6 3 9 9 C 1.38187 * 120.09454 * 180.02562 * 8 7 6 10 10 C 1.38148 * 120.13035 * 0.02562 * 9 8 7 11 11 C 1.38951 * 120.03414 * 359.97438 * 10 9 8 12 12 N 1.39722 * 120.04763 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99720 * 215.19814 * 12 11 10 14 14 O 1.21378 * 120.00301 * 355.80515 * 13 12 11 15 15 C 1.49355 * 119.99823 * 175.80753 * 13 12 11 16 16 O 1.21361 * 119.99966 * 359.97438 * 15 13 12 17 17 N 1.34779 * 120.00274 * 179.97438 * 15 13 12 18 18 C 1.46495 * 120.00262 * 179.97438 * 17 15 13 19 19 H 1.09004 * 109.47119 * 35.00350 * 18 17 15 20 20 C 1.52999 * 109.47286 * 275.00539 * 18 17 15 21 21 C 1.50701 * 109.46995 * 155.00452 * 18 17 15 22 22 H 1.07998 * 120.00153 * 0.02562 * 21 18 17 23 23 C 1.37885 * 119.99853 * 180.02562 * 21 18 17 24 24 N 1.31511 * 119.99833 * 0.02562 * 23 21 18 25 25 Si 1.86795 * 119.99864 * 180.02562 * 23 21 18 26 26 H 1.48499 * 109.47195 * 59.99966 * 25 23 21 27 27 H 1.48496 * 109.47211 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46814 * 299.99999 * 25 23 21 29 29 C 1.38563 * 120.02252 * 175.58572 * 7 6 3 30 30 H 1.08995 * 109.47515 * 60.00508 * 1 2 3 31 31 H 1.09005 * 109.46863 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47452 * 300.00308 * 1 2 3 33 33 H 1.09000 * 109.47306 * 240.00224 * 2 1 3 34 34 H 1.08995 * 109.47515 * 119.99492 * 2 1 3 35 35 H 1.08994 * 109.47438 * 59.99540 * 5 3 2 36 36 H 1.09000 * 109.46687 * 180.02562 * 5 3 2 37 37 H 1.08995 * 109.46898 * 299.99151 * 5 3 2 38 38 H 1.08000 * 119.95408 * 359.74308 * 8 7 6 39 39 H 1.08001 * 119.93588 * 179.97438 * 9 8 7 40 40 H 1.07990 * 119.98397 * 180.02562 * 10 9 8 41 41 H 0.97000 * 119.99903 * 35.19725 * 12 11 10 42 42 H 0.97004 * 119.99587 * 0.02562 * 17 15 13 43 43 H 1.09003 * 109.47316 * 60.00217 * 20 18 17 44 44 H 1.09004 * 109.47165 * 179.97438 * 20 18 17 45 45 H 1.08998 * 109.47549 * 300.00021 * 20 18 17 46 46 H 0.97001 * 119.99565 * 179.97438 * 24 23 21 47 47 H 1.08006 * 120.06198 * 359.96799 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5647 1.4445 0.1257 6 8 1.6618 2.0814 -1.2211 7 6 1.5713 3.4373 -1.2059 8 6 1.7510 4.1319 -0.0174 9 6 1.6588 5.5106 0.0001 10 6 1.3872 6.2023 -1.1645 11 6 1.2064 5.5125 -2.3570 12 7 0.9321 6.2118 -3.5351 13 6 0.1056 5.6802 -4.4574 14 8 -0.3403 4.5623 -4.3004 15 6 -0.2617 6.4668 -5.6728 16 8 0.1837 7.5847 -5.8296 17 7 -1.0879 5.9350 -6.5954 18 6 -1.4486 6.7068 -7.7872 19 1 -0.5980 7.3130 -8.0988 20 6 -2.6340 7.6188 -7.4648 21 6 -1.8282 5.7642 -8.9001 22 1 -1.8036 4.6970 -8.7359 23 6 -2.2069 6.2642 -10.1280 24 7 -2.2363 7.5637 -10.3281 25 14 -2.6781 5.0959 -11.5072 26 1 -3.8376 4.2709 -11.0827 27 1 -3.0424 5.8780 -12.7158 28 1 -1.5281 4.2097 -11.8198 29 6 1.2995 4.1272 -2.3764 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.9994 0.9054 -0.7161 36 1 3.9279 2.4722 0.1261 37 1 3.8531 0.9573 1.0570 38 1 1.9586 3.5937 0.8956 39 1 1.7986 6.0483 0.9262 40 1 1.3161 7.2797 -1.1481 41 1 1.3366 7.0799 -3.6892 42 1 -1.4442 5.0416 -6.4699 43 1 -2.3594 8.3006 -6.6599 44 1 -2.9021 8.1934 -8.3515 45 1 -3.4846 7.0127 -7.1532 46 1 -2.5024 7.9154 -11.1921 47 1 1.1597 3.5884 -3.3020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275991189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:39 Heat of formation + Delta-G solvation = -108.022129 kcal Electronic energy + Delta-G solvation = -28149.820998 eV Core-core repulsion = 24104.108984 eV Total energy + Delta-G solvation = -4045.712014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.18546 -41.16458 -39.98029 -38.63410 -37.05068 -35.90045 -34.97712 -34.34328 -31.60691 -31.12256 -30.64096 -30.41696 -27.39739 -26.42788 -24.99024 -24.10001 -23.48489 -22.64165 -21.49280 -21.14993 -20.27694 -19.40545 -18.17545 -17.92864 -17.34785 -17.06667 -16.98781 -16.93571 -16.45888 -16.23867 -15.92880 -15.28428 -15.12605 -14.95754 -14.60442 -14.53187 -14.46046 -14.28376 -14.19155 -13.77447 -13.38120 -13.16625 -13.07925 -12.93071 -12.86200 -12.76398 -12.72714 -12.64693 -12.32072 -12.22979 -12.12895 -12.03830 -11.74311 -11.43723 -11.25804 -11.19103 -10.70310 -10.61004 -10.01936 -9.53788 -9.07663 -8.21633 -6.39026 -0.09200 0.44146 0.56396 1.26093 1.45338 1.46442 1.54723 2.08148 2.19907 2.38770 2.74720 2.77197 3.09041 3.43916 3.70922 3.88543 3.94425 4.00006 4.16815 4.21084 4.28662 4.40779 4.49374 4.56507 4.64880 4.67251 4.67927 4.82680 4.86719 4.96722 4.99420 5.05471 5.15929 5.18174 5.21462 5.23905 5.27756 5.31131 5.39672 5.41739 5.45315 5.57535 5.72584 5.78780 5.97823 6.01510 6.49958 6.51715 6.62137 6.73977 7.02413 7.32891 8.84365 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015744 B = 0.002319 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.995347 B =12069.979277 C =13382.006123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C 0.070 3.930 4 H 0.089 0.911 5 C -0.176 4.176 6 O -0.328 6.328 7 C 0.140 3.860 8 C -0.219 4.219 9 C -0.052 4.052 10 C -0.176 4.176 11 C 0.163 3.837 12 N -0.634 5.634 13 C 0.516 3.484 14 O -0.517 6.517 15 C 0.497 3.503 16 O -0.555 6.555 17 N -0.670 5.670 18 C 0.268 3.732 19 H 0.016 0.984 20 C -0.136 4.136 21 C -0.555 4.555 22 H 0.069 0.931 23 C 0.021 3.979 24 N -0.911 5.911 25 Si 0.972 3.028 26 H -0.267 1.267 27 H -0.282 1.282 28 H -0.272 1.272 29 C -0.186 4.186 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.169 0.831 40 H 0.153 0.847 41 H 0.433 0.567 42 H 0.409 0.591 43 H 0.021 0.979 44 H 0.075 0.925 45 H 0.039 0.961 46 H 0.268 0.732 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.874 -9.891 26.573 30.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C 0.014 3.986 4 H 0.107 0.893 5 C -0.233 4.233 6 O -0.242 6.242 7 C 0.094 3.906 8 C -0.238 4.238 9 C -0.070 4.070 10 C -0.196 4.196 11 C 0.069 3.931 12 N -0.281 5.281 13 C 0.298 3.702 14 O -0.392 6.392 15 C 0.277 3.723 16 O -0.434 6.434 17 N -0.320 5.320 18 C 0.166 3.834 19 H 0.034 0.966 20 C -0.195 4.195 21 C -0.593 4.593 22 H 0.087 0.913 23 C -0.180 4.180 24 N -0.549 5.549 25 Si 0.796 3.204 26 H -0.191 1.191 27 H -0.207 1.207 28 H -0.197 1.197 29 C -0.207 4.207 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.174 0.826 39 H 0.186 0.814 40 H 0.170 0.830 41 H 0.273 0.727 42 H 0.245 0.755 43 H 0.040 0.960 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.748 -9.873 26.183 29.632 hybrid contribution -0.294 -0.239 -1.256 1.312 sum 9.454 -10.112 24.928 28.514 Atomic orbital electron populations 1.21768 0.95748 1.02271 1.01520 1.21683 0.96293 0.93413 1.04044 1.22863 0.96024 0.94332 0.85341 0.89323 1.22340 0.94022 1.03087 1.03834 1.86147 1.83576 1.16415 1.38092 1.18807 0.95022 0.83075 0.93665 1.21569 1.09062 0.95920 0.97227 1.21157 0.94454 0.93047 0.98377 1.21167 1.06651 1.01565 0.90232 1.17623 0.98961 0.90514 0.85984 1.43047 1.44839 1.23528 1.16707 1.20306 0.79359 0.86294 0.84251 1.90756 1.52919 1.18932 1.76615 1.20064 0.81005 0.86672 0.84557 1.90709 1.54919 1.19994 1.77821 1.46285 1.44600 1.20136 1.20941 1.18638 0.93578 0.90572 0.80615 0.96583 1.21930 0.98297 0.98922 1.00344 1.21454 1.47696 0.93434 0.96707 0.91287 1.25722 0.94614 0.96907 1.00782 1.70006 1.47250 1.12877 1.24775 0.85401 0.78870 0.78420 0.77695 1.19147 1.20681 1.19730 1.20383 1.08717 0.93230 0.98328 0.94612 0.91471 0.91969 0.91723 0.87249 0.92441 0.92174 0.88458 0.82580 0.81387 0.82980 0.72717 0.75479 0.95985 0.90679 0.94195 0.92242 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.81 71.98 0.71 -1.60 16 2 C -0.12 -1.47 5.64 30.60 0.17 -1.30 16 3 C 0.07 1.02 2.25 30.60 0.07 1.09 16 4 H 0.09 1.01 5.88 -2.39 -0.01 1.00 16 5 C -0.18 -2.01 9.31 71.98 0.67 -1.34 16 6 O -0.33 -7.81 9.34 -92.43 -0.86 -8.68 16 7 C 0.14 3.42 6.55 22.49 0.15 3.57 16 8 C -0.22 -3.73 8.44 22.40 0.19 -3.54 16 9 C -0.05 -0.77 10.03 22.24 0.22 -0.55 16 10 C -0.18 -3.32 9.96 22.42 0.22 -3.10 16 11 C 0.16 4.29 6.29 38.20 0.24 4.53 16 12 N -0.63 -18.06 5.32 -304.88 -1.62 -19.68 16 13 C 0.52 18.34 7.72 87.24 0.67 19.01 16 14 O -0.52 -20.09 13.93 -3.33 -0.05 -20.14 16 15 C 0.50 20.56 7.85 87.24 0.68 21.25 16 16 O -0.55 -25.01 16.14 -3.28 -0.05 -25.06 16 17 N -0.67 -29.73 5.06 -447.53 -2.27 -32.00 16 18 C 0.27 13.91 2.56 44.25 0.11 14.02 16 19 H 0.02 0.96 7.58 -2.38 -0.02 0.94 16 20 C -0.14 -6.80 9.26 71.98 0.67 -6.13 16 21 C -0.55 -29.79 8.73 25.60 0.22 -29.57 16 22 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 23 C 0.02 1.11 5.30 84.66 0.45 1.56 16 24 N -0.91 -51.28 11.32 21.45 0.24 -51.03 16 25 Si 0.97 42.28 29.54 68.60 2.03 44.31 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 29 C -0.19 -5.50 8.63 22.49 0.19 -5.30 16 30 H 0.03 0.73 7.82 -2.39 -0.02 0.71 16 31 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 0.74 7.53 -2.39 -0.02 0.72 16 37 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.16 1.73 5.76 -2.91 -0.02 1.71 16 39 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.15 2.13 8.06 -2.92 -0.02 2.11 16 41 H 0.43 10.63 8.30 -92.71 -0.77 9.86 16 42 H 0.41 16.97 8.01 -92.71 -0.74 16.22 16 43 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 4.05 6.07 -2.38 -0.01 4.04 16 45 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.12 4.11 6.25 -2.91 -0.02 4.09 16 Total: -1.00 -67.90 390.81 2.56 -65.34 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -0.50 Total: 34.33 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 5.65 Total: 12.61 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -3.64 Total: -102.71 kcal Atomic # 8 Polarization: -52.91 SS G_CDS: -0.96 Total: -53.88 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -67.90 2.56 -65.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275991189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.682 kcal (2) G-P(sol) polarization free energy of solvation -67.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds