Wall clock time and date at job start Tue Mar 31 2020 18:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47036 * 2 1 4 4 N 1.46501 * 109.46552 * 180.02562 * 3 2 1 5 5 C 1.37100 * 119.99961 * 264.76449 * 4 3 2 6 6 H 1.07999 * 119.99606 * 138.85854 * 5 4 3 7 7 C 1.38950 * 119.99788 * 318.86336 * 5 4 3 8 8 N 1.31404 * 120.00531 * 341.82598 * 7 5 4 9 9 Si 1.86802 * 119.99647 * 161.82577 * 7 5 4 10 10 H 1.48504 * 109.46908 * 60.00051 * 9 7 5 11 11 H 1.48494 * 109.47233 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47190 * 300.00320 * 9 7 5 13 13 C 1.34770 * 120.00058 * 84.77199 * 4 3 2 14 14 O 1.21291 * 120.00286 * 179.97438 * 13 4 3 15 15 C 1.50708 * 119.99960 * 359.97438 * 13 4 3 16 16 N 1.46500 * 109.47040 * 179.97438 * 15 13 4 17 17 C 1.46497 * 120.00099 * 270.00015 * 16 15 13 18 18 C 1.34777 * 119.99921 * 89.99927 * 16 15 13 19 19 O 1.21509 * 120.00295 * 359.97438 * 18 16 15 20 20 O 1.34642 * 119.99981 * 180.02562 * 18 16 15 21 21 C 1.45198 * 116.99936 * 180.02562 * 20 18 16 22 22 C 1.50698 * 109.47181 * 179.97438 * 21 20 18 23 23 C 1.38234 * 119.99994 * 89.99497 * 22 21 20 24 24 C 1.38234 * 120.00254 * 179.97438 * 23 22 21 25 25 C 1.38240 * 119.99954 * 359.97438 * 24 23 22 26 26 C 1.38238 * 119.99730 * 0.27323 * 25 24 23 27 27 C 1.38234 * 119.99945 * 359.51441 * 26 25 24 28 28 H 1.09001 * 109.47000 * 300.00279 * 1 2 3 29 29 H 1.09000 * 109.47447 * 59.99538 * 1 2 3 30 30 H 1.09000 * 109.47589 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46644 * 240.00364 * 2 1 3 32 32 H 1.09001 * 109.46846 * 120.00004 * 2 1 3 33 33 H 1.08997 * 109.46743 * 59.99961 * 3 2 1 34 34 H 1.08998 * 109.46992 * 300.00139 * 3 2 1 35 35 H 0.96995 * 120.00201 * 179.97438 * 8 7 5 36 36 H 1.08991 * 109.47138 * 59.99848 * 15 13 4 37 37 H 1.09004 * 109.46669 * 299.99758 * 15 13 4 38 38 H 1.09005 * 109.46682 * 269.99968 * 17 16 15 39 39 H 1.09001 * 109.47141 * 29.99516 * 17 16 15 40 40 H 1.08997 * 109.47352 * 149.99989 * 17 16 15 41 41 H 1.09000 * 109.47756 * 59.99154 * 21 20 18 42 42 H 1.09010 * 109.47153 * 299.99366 * 21 20 18 43 43 H 1.08002 * 120.00189 * 359.97438 * 23 22 21 44 44 H 1.07997 * 120.00343 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.00069 * 180.02562 * 25 24 23 46 46 H 1.07995 * 120.00097 * 179.72726 * 26 25 24 47 47 H 1.07995 * 120.00121 * 180.27136 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.5505 1.1815 6 1 5.0710 0.9481 1.3521 7 6 3.7540 2.4350 2.1599 8 7 2.9285 3.4077 1.8451 9 14 4.3400 2.2413 3.9231 10 1 5.8197 2.3584 3.9685 11 1 3.7338 3.3031 4.7657 12 1 3.9330 0.9085 4.4364 13 6 4.1784 1.3362 -1.1632 14 8 5.3913 1.3365 -1.1638 15 6 3.4243 1.2169 -2.4626 16 7 4.3758 1.1163 -3.5719 17 6 4.8507 2.3294 -4.2420 18 6 4.8144 -0.0924 -3.9760 19 8 4.4209 -1.0986 -3.4200 20 8 5.6893 -0.1849 -4.9952 21 6 6.1179 -1.5185 -5.3771 22 6 7.0882 -1.4246 -6.5263 23 6 8.4435 -1.3105 -6.2791 24 6 9.3336 -1.2249 -7.3332 25 6 8.8685 -1.2538 -8.6347 26 6 7.5128 -1.3627 -8.8819 27 6 6.6231 -1.4528 -7.8278 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 2.6231 4.0249 2.5283 36 1 2.7973 2.0977 -2.6009 37 1 2.7980 0.3251 -2.4386 38 1 4.1870 2.5689 -5.0729 39 1 4.8581 3.1570 -3.5328 40 1 5.8601 2.1648 -4.6190 41 1 5.2513 -2.1058 -5.6807 42 1 6.6043 -2.0006 -4.5290 43 1 8.8070 -1.2883 -5.2623 44 1 10.3925 -1.1362 -7.1400 45 1 9.5640 -1.1873 -9.4583 46 1 7.1490 -1.3809 -9.8985 47 1 5.5643 -1.5423 -8.0209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277560065.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:03 Heat of formation + Delta-G solvation = -98.790468 kcal Electronic energy + Delta-G solvation = -28829.417672 eV Core-core repulsion = 24784.105973 eV Total energy + Delta-G solvation = -4045.311699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.79168 -40.52835 -40.00450 -37.88332 -37.11105 -36.46754 -34.57005 -33.14628 -32.99533 -31.85606 -30.14699 -28.05039 -27.59993 -26.86051 -25.92790 -23.53978 -22.77598 -22.40935 -22.07626 -20.68373 -19.18067 -18.87300 -18.40083 -18.18120 -17.54921 -17.42261 -16.83160 -16.36064 -16.16850 -15.98823 -15.73370 -15.45371 -15.34266 -14.89172 -14.62765 -14.34972 -14.17135 -14.04961 -13.90242 -13.75152 -13.48699 -13.39737 -13.34877 -13.22610 -13.00568 -12.80857 -12.63808 -12.25942 -12.12011 -12.10988 -12.08455 -11.98365 -11.73106 -11.70964 -11.51200 -10.89151 -10.76517 -9.87742 -9.87084 -9.74440 -9.40186 -8.34937 -6.11362 0.11255 0.44984 1.13657 1.37644 1.39503 1.49335 1.68008 2.01143 2.28583 2.66856 2.97678 3.02319 3.13449 3.66760 3.77206 3.95577 4.03648 4.09162 4.12532 4.20156 4.23066 4.25096 4.28852 4.31832 4.41655 4.58261 4.61430 4.64714 4.68378 4.76292 4.85786 4.97703 4.98862 5.10475 5.13367 5.16290 5.19474 5.29806 5.39972 5.45671 5.49869 5.55997 5.58121 5.59141 6.03269 6.17797 6.22457 6.53389 7.10629 7.18820 7.43124 8.04108 8.68062 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.002547 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.395396 B =10989.476353 C =11729.836759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 C 0.109 3.891 4 N -0.451 5.451 5 C -0.342 4.342 6 H 0.052 0.948 7 C 0.010 3.990 8 N -0.884 5.884 9 Si 0.977 3.023 10 H -0.280 1.280 11 H -0.267 1.267 12 H -0.266 1.266 13 C 0.432 3.568 14 O -0.623 6.623 15 C 0.127 3.873 16 N -0.577 5.577 17 C 0.088 3.912 18 C 0.649 3.351 19 O -0.607 6.607 20 O -0.359 6.359 21 C 0.125 3.875 22 C -0.113 4.113 23 C -0.112 4.112 24 C -0.129 4.129 25 C -0.109 4.109 26 C -0.125 4.125 27 C -0.101 4.101 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.275 0.725 36 H 0.138 0.862 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.118 0.882 44 H 0.144 0.856 45 H 0.152 0.848 46 H 0.152 0.848 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.853 -5.339 -20.044 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.174 4.174 3 C -0.014 4.014 4 N -0.170 5.170 5 C -0.471 4.471 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.521 5.521 9 Si 0.801 3.199 10 H -0.206 1.206 11 H -0.191 1.191 12 H -0.191 1.191 13 C 0.221 3.779 14 O -0.509 6.509 15 C 0.001 3.999 16 N -0.316 5.316 17 C -0.053 4.053 18 C 0.404 3.596 19 O -0.498 6.498 20 O -0.273 6.273 21 C 0.051 3.949 22 C -0.114 4.114 23 C -0.130 4.130 24 C -0.147 4.147 25 C -0.127 4.127 26 C -0.143 4.143 27 C -0.119 4.119 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.155 0.845 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.136 0.864 44 H 0.161 0.839 45 H 0.170 0.830 46 H 0.170 0.830 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.246 -5.493 -19.826 20.610 hybrid contribution 0.558 -0.103 1.512 1.615 sum 1.803 -5.596 -18.314 19.234 Atomic orbital electron populations 1.21625 0.92863 1.02357 1.02526 1.21912 0.97760 0.96869 1.00873 1.21697 0.79823 0.96269 1.03617 1.43707 1.06053 1.62986 1.04252 1.19198 1.12371 1.22454 0.93056 0.92967 1.26062 0.96913 0.92751 1.03593 1.69945 1.33490 1.13359 1.35323 0.85260 0.78297 0.78594 0.77766 1.20591 1.19108 1.19120 1.21694 0.88397 0.81061 0.86792 1.90477 1.16318 1.56476 1.87619 1.21427 0.90058 1.06003 0.82383 1.46271 1.46499 1.04767 1.34013 1.21922 1.00887 0.84945 0.97583 1.18114 0.78180 0.84230 0.79058 1.90932 1.62646 1.36437 1.59825 1.86293 1.57457 1.35169 1.48385 1.21841 0.97384 0.79939 0.95729 1.19525 0.93518 1.04675 0.93640 1.21288 0.92886 0.98646 1.00225 1.21451 1.00557 1.00014 0.92680 1.21638 0.96318 0.97442 0.97262 1.21512 0.93371 0.99527 0.99872 1.21313 1.01042 0.98103 0.91451 0.92744 0.91088 0.91567 0.92964 0.93995 0.89694 0.90908 0.91552 0.84484 0.87357 0.88827 0.91232 0.90885 0.89553 0.91708 0.86369 0.83860 0.83007 0.83011 0.84623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.97 16 2 C -0.14 -4.95 6.17 30.60 0.19 -4.77 16 3 C 0.11 4.64 4.69 86.38 0.41 5.04 16 4 N -0.45 -23.60 2.50 -635.53 -1.59 -25.19 16 5 C -0.34 -19.98 8.84 84.04 0.74 -19.23 16 6 H 0.05 3.32 7.82 -2.91 -0.02 3.30 16 7 C 0.01 0.55 4.95 84.93 0.42 0.97 16 8 N -0.88 -47.23 11.61 21.66 0.25 -46.98 16 9 Si 0.98 43.13 29.59 68.60 2.03 45.16 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 13 C 0.43 22.24 7.66 87.66 0.67 22.92 16 14 O -0.62 -37.65 16.34 -3.06 -0.05 -37.70 16 15 C 0.13 4.86 4.49 85.64 0.38 5.24 16 16 N -0.58 -21.25 2.36 -981.65 -2.32 -23.56 16 17 C 0.09 2.52 10.44 127.77 1.33 3.85 16 18 C 0.65 25.63 8.39 129.79 1.09 26.72 16 19 O -0.61 -27.48 15.71 19.81 0.31 -27.17 16 20 O -0.36 -12.05 9.03 -55.51 -0.50 -12.55 16 21 C 0.13 3.53 5.60 71.24 0.40 3.93 16 22 C -0.11 -2.64 5.52 -19.87 -0.11 -2.75 16 23 C -0.11 -2.48 9.70 22.27 0.22 -2.26 16 24 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 25 C -0.11 -1.51 10.05 22.27 0.22 -1.28 16 26 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 27 C -0.10 -1.88 9.70 22.27 0.22 -1.66 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.91 6.59 -2.39 -0.02 1.90 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 3.99 5.76 -2.39 -0.01 3.97 16 34 H 0.07 2.65 6.66 -2.39 -0.02 2.64 16 35 H 0.27 13.69 8.31 -92.71 -0.77 12.91 16 36 H 0.14 4.22 7.34 -2.39 -0.02 4.20 16 37 H 0.11 4.05 5.82 -2.38 -0.01 4.03 16 38 H 0.09 1.93 8.14 -2.38 -0.02 1.92 16 39 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 40 H 0.07 2.10 7.37 -2.39 -0.02 2.08 16 41 H 0.09 2.23 8.08 -2.39 -0.02 2.21 16 42 H 0.06 1.97 8.08 -2.38 -0.02 1.95 16 43 H 0.12 2.67 8.06 -2.91 -0.02 2.64 16 44 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 45 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 46 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 47 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -78.73 395.58 6.44 -72.30 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.96 Total: 25.52 kcal Atomic # 6 Polarization: 22.84 SS G_CDS: 7.34 Total: 30.18 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -3.66 Total: -95.74 kcal Atomic # 8 Polarization: -77.18 SS G_CDS: -0.24 Total: -77.42 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -78.73 6.44 -72.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277560065.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.495 kcal (2) G-P(sol) polarization free energy of solvation -78.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds