Wall clock time and date at job start Tue Mar 31 2020 18:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47299 * 2 1 4 4 H 1.09003 * 109.47325 * 304.99908 * 3 2 1 5 5 C 1.50696 * 109.47522 * 184.99875 * 3 2 1 6 6 H 1.08004 * 120.00090 * 240.00252 * 5 3 2 7 7 C 1.37881 * 119.99882 * 59.99601 * 5 3 2 8 8 N 1.31504 * 119.99984 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99815 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47525 * 60.00224 * 9 7 5 11 11 H 1.48500 * 109.46897 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47121 * 299.99827 * 9 7 5 13 13 N 1.46505 * 109.47206 * 64.99669 * 3 2 1 14 14 C 1.34771 * 120.00036 * 275.00037 * 13 3 2 15 15 O 1.21358 * 120.00311 * 0.02562 * 14 13 3 16 16 C 1.49352 * 120.00138 * 179.97438 * 14 13 3 17 17 O 1.21377 * 120.00124 * 0.02562 * 16 14 13 18 18 N 1.34776 * 120.00507 * 179.97438 * 16 14 13 19 19 C 1.39720 * 120.00386 * 185.52228 * 18 16 14 20 20 C 1.38852 * 120.04439 * 24.85591 * 19 18 16 21 21 C 1.38573 * 119.86587 * 179.97438 * 20 19 18 22 22 O 1.35902 * 120.01437 * 179.97438 * 21 20 19 23 23 C 1.42899 * 117.00029 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.96722 * 0.02562 * 21 20 19 25 25 C 1.50696 * 119.95323 * 180.02562 * 24 21 20 26 26 C 1.38180 * 120.09566 * 359.97438 * 24 21 20 27 27 C 1.38151 * 120.13253 * 359.97438 * 26 24 21 28 28 C 1.50692 * 119.98592 * 180.02562 * 27 26 24 29 29 H 1.09008 * 109.47036 * 59.99657 * 1 2 3 30 30 H 1.08992 * 109.47477 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47193 * 300.00154 * 1 2 3 32 32 H 1.08992 * 109.47249 * 239.99858 * 2 1 3 33 33 H 1.09006 * 109.47178 * 119.99576 * 2 1 3 34 34 H 0.97003 * 120.00198 * 179.97438 * 8 7 5 35 35 H 0.96997 * 119.99745 * 95.00181 * 13 3 2 36 36 H 0.97002 * 119.99824 * 5.52400 * 18 16 14 37 37 H 1.07994 * 120.06637 * 0.25430 * 20 19 18 38 38 H 1.08996 * 109.47650 * 59.99790 * 23 22 21 39 39 H 1.09000 * 109.47165 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.47283 * 299.99517 * 23 22 21 41 41 H 1.08993 * 109.47522 * 89.99651 * 25 24 21 42 42 H 1.09003 * 109.47169 * 210.00475 * 25 24 21 43 43 H 1.09003 * 109.47147 * 329.99844 * 25 24 21 44 44 H 1.07995 * 119.93665 * 179.97438 * 26 24 21 45 45 H 1.08999 * 109.47266 * 90.00287 * 28 27 26 46 46 H 1.08995 * 109.47515 * 210.00193 * 28 27 26 47 47 H 1.09001 * 109.47106 * 329.99958 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3374 -2.1732 9 14 6.0050 0.8800 -1.3810 10 1 6.5967 0.1453 -0.2342 11 1 6.3979 0.2167 -2.6502 12 1 6.5004 2.2800 -1.3808 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6645 1.3669 15 8 -0.3401 2.6320 0.4337 16 6 0.0398 3.3318 2.6432 17 8 0.8149 3.3639 3.5767 18 7 -1.1773 3.8992 2.7582 19 6 -1.5051 4.6226 3.9077 20 6 -0.5024 5.2002 4.6751 21 6 -0.8318 5.9174 5.8142 22 8 0.1472 6.4835 6.5678 23 6 1.4939 6.2996 6.1265 24 6 -2.1621 6.0563 6.1856 25 6 -2.5199 6.8368 7.4240 26 6 -3.1587 5.4809 5.4208 27 6 -2.8350 4.7660 4.2838 28 6 -3.9246 4.1404 3.4519 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8293 -0.0605 -2.9501 35 1 2.2719 2.1232 1.9977 36 1 -1.8257 3.8053 2.0429 37 1 0.5317 5.0946 4.3824 38 1 1.6104 6.7231 5.1290 39 1 2.1737 6.8003 6.8159 40 1 1.7248 5.2347 6.0984 41 1 -2.6729 7.8837 7.1622 42 1 -3.4354 6.4327 7.8563 43 1 -1.7102 6.7584 8.1496 44 1 -4.1928 5.5903 5.7123 45 1 -4.2537 4.8490 2.6918 46 1 -3.5421 3.2412 2.9689 47 1 -4.7662 3.8783 4.0931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281085441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:59 Heat of formation + Delta-G solvation = -89.007872 kcal Electronic energy + Delta-G solvation = -29056.330329 eV Core-core repulsion = 25011.442835 eV Total energy + Delta-G solvation = -4044.887494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15335 -39.94271 -38.55968 -37.67534 -35.57897 -34.91892 -32.61011 -32.34473 -31.42633 -31.03015 -27.99944 -27.54016 -27.05651 -26.14402 -24.21022 -22.99378 -22.32266 -20.78336 -20.31902 -19.55127 -18.92260 -17.99692 -16.93743 -16.19786 -16.14730 -15.86820 -15.67404 -15.41411 -15.14389 -14.95917 -14.37161 -14.30413 -13.89354 -13.74624 -13.71368 -13.34841 -13.25671 -12.79700 -12.78591 -12.27815 -12.19114 -12.04074 -11.99033 -11.75317 -11.64338 -11.46619 -11.35267 -11.24156 -11.11069 -10.92003 -10.83110 -10.40669 -10.31353 -10.15272 -9.74770 -9.20034 -9.11365 -8.61051 -8.52600 -8.10112 -7.84617 -6.21603 -4.31695 0.99747 1.28161 1.87659 2.60180 3.18155 3.21905 3.27144 3.29004 3.47348 3.72539 4.00395 4.29012 4.61910 4.79628 4.81558 4.95246 5.02085 5.10211 5.10660 5.14350 5.24156 5.34500 5.43451 5.45647 5.48620 5.54901 5.67308 5.75515 5.93936 5.99750 6.26825 6.26918 6.30419 6.31478 6.33627 6.50368 6.70277 6.89363 6.95332 7.07776 7.13327 7.22079 7.28326 7.44109 7.58049 7.72433 7.82764 8.03317 8.37209 8.55580 8.79946 9.35220 10.83755 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.002791 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.398025 B =10031.559468 C =11418.176569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.539 4.539 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.666 5.666 14 C 0.494 3.506 15 O -0.528 6.528 16 C 0.506 3.494 17 O -0.504 6.504 18 N -0.646 5.646 19 C 0.185 3.815 20 C -0.215 4.215 21 C 0.141 3.859 22 O -0.314 6.314 23 C 0.026 3.974 24 C -0.136 4.136 25 C -0.100 4.100 26 C -0.063 4.063 27 C -0.148 4.148 28 C -0.112 4.112 29 H 0.052 0.948 30 H 0.027 0.973 31 H 0.034 0.966 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.402 0.598 36 H 0.424 0.576 37 H 0.155 0.845 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.132 0.868 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.576 10.062 14.728 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.315 5.315 14 C 0.272 3.728 15 O -0.406 6.406 16 C 0.289 3.711 17 O -0.378 6.378 18 N -0.291 5.291 19 C 0.089 3.911 20 C -0.235 4.235 21 C 0.095 3.905 22 O -0.227 6.227 23 C -0.069 4.069 24 C -0.138 4.138 25 C -0.156 4.156 26 C -0.082 4.082 27 C -0.151 4.151 28 C -0.169 4.169 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.236 0.764 36 H 0.263 0.737 37 H 0.172 0.828 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.150 0.850 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.474 10.007 14.608 21.099 hybrid contribution 1.207 -0.239 -0.343 1.277 sum -10.267 9.768 14.265 20.107 Atomic orbital electron populations 1.21857 0.98300 0.98474 1.01001 1.21967 0.92656 0.99359 1.02813 1.19028 0.94799 0.89402 0.80030 0.92703 1.21159 0.90270 1.39644 1.06622 0.91836 1.24867 0.98849 0.94550 0.95216 1.69865 1.35402 1.37281 1.09310 0.86464 0.84473 0.78425 0.77531 1.20037 1.21055 1.20100 1.46469 1.13393 1.52362 1.19263 1.19563 0.84626 0.81586 0.86982 1.90748 1.51178 1.59298 1.39418 1.21073 0.81726 0.78800 0.89458 1.90672 1.50920 1.56555 1.39670 1.43301 1.16337 1.50213 1.19291 1.17324 0.92686 0.93096 0.87952 1.21451 1.01502 1.03006 0.97571 1.18606 0.88287 0.93196 0.90374 1.86022 1.15301 1.71393 1.50000 1.23089 0.80288 1.02587 1.00981 1.19188 0.89843 1.04627 1.00108 1.20542 1.01685 0.98890 0.94505 1.20490 0.98529 0.96042 0.93133 1.19512 0.92549 1.04451 0.98603 1.20684 0.96584 1.00297 0.99299 0.92903 0.95416 0.94681 0.87800 0.94641 0.92333 0.76414 0.73723 0.82778 0.92653 0.88314 0.91973 0.91687 0.91913 0.91345 0.85024 0.91118 0.91684 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.60 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.48 2.24 -69.08 -0.15 6.32 16 4 H 0.06 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.83 11.29 55.43 0.63 -23.20 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.15 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.67 -13.72 5.01 -55.40 -0.28 -14.00 16 14 C 0.49 9.49 6.46 -11.63 -0.08 9.42 16 15 O -0.53 -10.96 13.62 5.49 0.07 -10.88 16 16 C 0.51 8.47 7.69 -11.63 -0.09 8.38 16 17 O -0.50 -8.92 13.64 5.47 0.07 -8.84 16 18 N -0.65 -9.13 4.96 -10.31 -0.05 -9.18 16 19 C 0.18 2.53 6.41 -83.77 -0.54 1.99 16 20 C -0.21 -3.05 7.70 -39.23 -0.30 -3.36 16 21 C 0.14 1.85 6.66 -39.24 -0.26 1.59 16 22 O -0.31 -3.84 9.53 -19.43 -0.19 -4.03 16 23 C 0.03 0.26 9.81 101.05 0.99 1.25 16 24 C -0.14 -1.54 5.90 -104.43 -0.62 -2.16 16 25 C -0.10 -0.87 9.79 36.00 0.35 -0.52 16 26 C -0.06 -0.65 9.34 -39.63 -0.37 -1.02 16 27 C -0.15 -1.68 5.90 -104.39 -0.62 -2.30 16 28 C -0.11 -0.98 9.44 36.00 0.34 -0.64 16 29 H 0.05 1.16 7.85 -51.92 -0.41 0.75 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.03 0.71 5.64 -51.93 -0.29 0.42 16 32 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 35 H 0.40 7.75 8.01 -40.82 -0.33 7.42 16 36 H 0.42 5.37 6.87 -40.82 -0.28 5.09 16 37 H 0.15 2.34 4.03 -52.49 -0.21 2.13 16 38 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 43 H 0.07 0.63 7.52 -51.93 -0.39 0.24 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.60 6.98 -51.93 -0.36 0.24 16 47 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -28.98 380.96 -7.27 -36.24 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.69 Total: 12.23 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.56 Total: 0.76 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.30 Total: -46.38 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.04 Total: -23.76 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.98 -7.27 -36.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281085441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.763 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds