Wall clock time and date at job start Tue Mar 31 2020 18:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47299 * 2 1 4 4 H 1.09003 * 109.47325 * 304.99908 * 3 2 1 5 5 C 1.50696 * 109.47522 * 184.99875 * 3 2 1 6 6 H 1.08004 * 120.00090 * 240.00252 * 5 3 2 7 7 C 1.37881 * 119.99882 * 59.99601 * 5 3 2 8 8 N 1.31504 * 119.99984 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99815 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47525 * 60.00224 * 9 7 5 11 11 H 1.48500 * 109.46897 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47121 * 299.99827 * 9 7 5 13 13 N 1.46505 * 109.47206 * 64.99669 * 3 2 1 14 14 C 1.34771 * 120.00036 * 275.00037 * 13 3 2 15 15 O 1.21358 * 120.00311 * 0.02562 * 14 13 3 16 16 C 1.49352 * 120.00138 * 179.97438 * 14 13 3 17 17 O 1.21377 * 120.00124 * 0.02562 * 16 14 13 18 18 N 1.34776 * 120.00507 * 179.97438 * 16 14 13 19 19 C 1.39720 * 120.00386 * 185.52228 * 18 16 14 20 20 C 1.38852 * 120.04439 * 24.85591 * 19 18 16 21 21 C 1.38573 * 119.86587 * 179.97438 * 20 19 18 22 22 O 1.35902 * 120.01437 * 179.97438 * 21 20 19 23 23 C 1.42899 * 117.00029 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.96722 * 0.02562 * 21 20 19 25 25 C 1.50696 * 119.95323 * 180.02562 * 24 21 20 26 26 C 1.38180 * 120.09566 * 359.97438 * 24 21 20 27 27 C 1.38151 * 120.13253 * 359.97438 * 26 24 21 28 28 C 1.50692 * 119.98592 * 180.02562 * 27 26 24 29 29 H 1.09008 * 109.47036 * 59.99657 * 1 2 3 30 30 H 1.08992 * 109.47477 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47193 * 300.00154 * 1 2 3 32 32 H 1.08992 * 109.47249 * 239.99858 * 2 1 3 33 33 H 1.09006 * 109.47178 * 119.99576 * 2 1 3 34 34 H 0.97003 * 120.00198 * 179.97438 * 8 7 5 35 35 H 0.96997 * 119.99745 * 95.00181 * 13 3 2 36 36 H 0.97002 * 119.99824 * 5.52400 * 18 16 14 37 37 H 1.07994 * 120.06637 * 0.25430 * 20 19 18 38 38 H 1.08996 * 109.47650 * 59.99790 * 23 22 21 39 39 H 1.09000 * 109.47165 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.47283 * 299.99517 * 23 22 21 41 41 H 1.08993 * 109.47522 * 89.99651 * 25 24 21 42 42 H 1.09003 * 109.47169 * 210.00475 * 25 24 21 43 43 H 1.09003 * 109.47147 * 329.99844 * 25 24 21 44 44 H 1.07995 * 119.93665 * 179.97438 * 26 24 21 45 45 H 1.08999 * 109.47266 * 90.00287 * 28 27 26 46 46 H 1.08995 * 109.47515 * 210.00193 * 28 27 26 47 47 H 1.09001 * 109.47106 * 329.99958 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3374 -2.1732 9 14 6.0050 0.8800 -1.3810 10 1 6.5967 0.1453 -0.2342 11 1 6.3979 0.2167 -2.6502 12 1 6.5004 2.2800 -1.3808 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6645 1.3669 15 8 -0.3401 2.6320 0.4337 16 6 0.0398 3.3318 2.6432 17 8 0.8149 3.3639 3.5767 18 7 -1.1773 3.8992 2.7582 19 6 -1.5051 4.6226 3.9077 20 6 -0.5024 5.2002 4.6751 21 6 -0.8318 5.9174 5.8142 22 8 0.1472 6.4835 6.5678 23 6 1.4939 6.2996 6.1265 24 6 -2.1621 6.0563 6.1856 25 6 -2.5199 6.8368 7.4240 26 6 -3.1587 5.4809 5.4208 27 6 -2.8350 4.7660 4.2838 28 6 -3.9246 4.1404 3.4519 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8293 -0.0605 -2.9501 35 1 2.2719 2.1232 1.9977 36 1 -1.8257 3.8053 2.0429 37 1 0.5317 5.0946 4.3824 38 1 1.6104 6.7231 5.1290 39 1 2.1737 6.8003 6.8159 40 1 1.7248 5.2347 6.0984 41 1 -2.6729 7.8837 7.1622 42 1 -3.4354 6.4327 7.8563 43 1 -1.7102 6.7584 8.1496 44 1 -4.1928 5.5903 5.7123 45 1 -4.2537 4.8490 2.6918 46 1 -3.5421 3.2412 2.9689 47 1 -4.7662 3.8783 4.0931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281085441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:58 Heat of formation + Delta-G solvation = -107.048269 kcal Electronic energy + Delta-G solvation = -29057.112619 eV Core-core repulsion = 25011.442835 eV Total energy + Delta-G solvation = -4045.669784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.34617 -41.12631 -39.92679 -38.72759 -37.23690 -36.15388 -34.36791 -33.34003 -32.86063 -32.34039 -29.26644 -28.81312 -28.05691 -27.16993 -25.66425 -24.60044 -23.41816 -21.94995 -21.60923 -21.24419 -20.21514 -19.23944 -18.32051 -17.82256 -17.48617 -17.00177 -16.85723 -16.71016 -16.59116 -16.02561 -16.01485 -15.52653 -15.09537 -14.78135 -14.68887 -14.62601 -14.43594 -13.99900 -13.89594 -13.52630 -13.51806 -13.21729 -13.03623 -13.01702 -12.89826 -12.84028 -12.75192 -12.68438 -12.40212 -12.22707 -12.13644 -12.12565 -11.94628 -11.61462 -11.13924 -11.12436 -10.63521 -10.54235 -9.88193 -9.50260 -8.78230 -8.20363 -6.37576 -0.13786 0.37262 0.62077 1.25846 1.45165 1.45546 1.53778 2.09308 2.32497 2.37893 2.67527 2.70819 3.09542 3.43402 3.80695 3.92562 3.96301 4.12839 4.29720 4.32309 4.39095 4.46759 4.53107 4.53978 4.68835 4.69258 4.70367 4.78539 4.83010 4.91364 4.99706 5.02822 5.10822 5.18445 5.20503 5.32239 5.36651 5.36716 5.40025 5.50879 5.54019 5.66203 5.76971 5.80819 5.97554 6.09197 6.35348 6.48792 6.63934 6.73647 7.05864 7.34218 8.84652 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.002791 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.398025 B =10031.559468 C =11418.176569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.016 0.984 5 C -0.556 4.556 6 H 0.068 0.932 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.669 5.669 14 C 0.496 3.504 15 O -0.544 6.544 16 C 0.513 3.487 17 O -0.517 6.517 18 N -0.630 5.630 19 C 0.155 3.845 20 C -0.231 4.231 21 C 0.122 3.878 22 O -0.320 6.320 23 C 0.024 3.976 24 C -0.136 4.136 25 C -0.098 4.098 26 C -0.060 4.060 27 C -0.142 4.142 28 C -0.113 4.113 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.268 0.732 35 H 0.408 0.592 36 H 0.430 0.570 37 H 0.138 0.862 38 H 0.051 0.949 39 H 0.127 0.873 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.168 0.832 45 H 0.084 0.916 46 H 0.057 0.943 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.972 10.788 16.486 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.034 0.966 5 C -0.594 4.594 6 H 0.086 0.914 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.319 5.319 14 C 0.276 3.724 15 O -0.423 6.423 16 C 0.296 3.704 17 O -0.392 6.392 18 N -0.276 5.276 19 C 0.061 3.939 20 C -0.252 4.252 21 C 0.076 3.924 22 O -0.234 6.234 23 C -0.070 4.070 24 C -0.138 4.138 25 C -0.154 4.154 26 C -0.078 4.078 27 C -0.145 4.145 28 C -0.169 4.169 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.243 0.757 36 H 0.270 0.730 37 H 0.155 0.845 38 H 0.070 0.930 39 H 0.145 0.855 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.186 0.814 45 H 0.103 0.897 46 H 0.075 0.925 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.902 10.757 16.393 23.471 hybrid contribution 1.543 -0.380 -0.836 1.796 sum -11.359 10.376 15.556 21.879 Atomic orbital electron populations 1.21710 0.96512 0.99743 1.00416 1.21823 0.94204 0.98515 1.01704 1.18649 0.94091 0.89583 0.80222 0.96645 1.21486 0.91213 1.39696 1.06962 0.91400 1.25670 1.03158 0.94138 0.94870 1.69995 1.37099 1.37863 1.09732 0.85462 0.79222 0.78452 0.77618 1.19207 1.20831 1.19769 1.46235 1.14305 1.52912 1.18407 1.19936 0.83822 0.80882 0.87791 1.90733 1.51507 1.59677 1.40388 1.20416 0.82687 0.79225 0.88120 1.90680 1.51570 1.57352 1.39616 1.43119 1.15238 1.49357 1.19870 1.17552 0.93862 0.94418 0.88110 1.21420 1.01002 1.04200 0.98584 1.18864 0.89393 0.93762 0.90374 1.86008 1.15869 1.71398 1.50111 1.23208 0.80002 1.02142 1.01693 1.19649 0.89270 1.03995 1.00849 1.20598 1.02449 0.99214 0.93170 1.20924 1.00038 0.94682 0.92130 1.19860 0.92000 1.03670 0.98920 1.20772 0.96348 1.00097 0.99692 0.94453 0.93169 0.94174 0.90240 0.94215 0.92318 0.75657 0.72964 0.84480 0.93040 0.85511 0.93232 0.90663 0.89592 0.92074 0.81414 0.89732 0.92452 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.51 71.98 0.61 -4.71 16 2 C -0.12 -5.87 5.45 30.59 0.17 -5.70 16 3 C 0.28 13.77 2.24 44.24 0.10 13.87 16 4 H 0.02 0.90 7.58 -2.39 -0.02 0.88 16 5 C -0.56 -29.03 8.73 25.60 0.22 -28.80 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 1.19 5.29 84.66 0.45 1.64 16 8 N -0.91 -50.20 11.29 21.45 0.24 -49.96 16 9 Si 0.97 41.50 29.54 68.60 2.03 43.53 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 N -0.67 -28.24 5.01 -447.53 -2.24 -30.48 16 14 C 0.50 19.43 6.46 87.24 0.56 20.00 16 15 O -0.54 -23.02 13.62 -3.27 -0.04 -23.06 16 16 C 0.51 17.41 7.69 87.24 0.67 18.08 16 17 O -0.52 -18.68 13.64 -3.33 -0.05 -18.73 16 18 N -0.63 -17.71 4.96 -304.89 -1.51 -19.22 16 19 C 0.16 4.15 6.41 38.20 0.24 4.39 16 20 C -0.23 -6.64 7.70 22.50 0.17 -6.47 16 21 C 0.12 3.12 6.66 22.49 0.15 3.27 16 22 O -0.32 -7.73 9.53 -92.45 -0.88 -8.61 16 23 C 0.02 0.49 9.81 113.37 1.11 1.60 16 24 C -0.14 -2.79 5.90 -19.74 -0.12 -2.91 16 25 C -0.10 -1.44 9.79 71.23 0.70 -0.74 16 26 C -0.06 -1.03 9.34 22.24 0.21 -0.83 16 27 C -0.14 -2.90 5.90 -19.72 -0.12 -3.02 16 28 C -0.11 -1.66 9.44 71.23 0.67 -0.99 16 29 H 0.04 1.66 7.85 -2.38 -0.02 1.64 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.62 5.64 -2.39 -0.01 1.60 16 32 H 0.08 4.20 5.95 -2.39 -0.01 4.18 16 33 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 35 H 0.41 16.09 8.01 -92.71 -0.74 15.34 16 36 H 0.43 10.71 6.87 -92.71 -0.64 10.08 16 37 H 0.14 4.34 4.03 -2.91 -0.01 4.33 16 38 H 0.05 1.06 7.66 -2.39 -0.02 1.04 16 39 H 0.13 1.75 8.14 -2.39 -0.02 1.74 16 40 H 0.05 1.11 7.66 -2.39 -0.02 1.09 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 43 H 0.06 1.01 7.52 -2.39 -0.02 0.99 16 44 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.06 0.95 6.98 -2.39 -0.02 0.93 16 47 H 0.09 0.98 8.08 -2.39 -0.02 0.96 16 Total: -1.00 -63.65 380.96 2.99 -60.66 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: -0.36 Total: 37.18 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 5.81 Total: 8.68 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -3.51 Total: -99.66 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -0.97 Total: -50.40 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -63.65 2.99 -60.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281085441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.385 kcal (2) G-P(sol) polarization free energy of solvation -63.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds