Wall clock time and date at job start Tue Mar 31 2020 18:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46934 * 2 1 4 4 H 1.09001 * 109.47365 * 55.00469 * 3 2 1 5 5 C 1.50701 * 109.47179 * 175.00083 * 3 2 1 6 6 H 1.08001 * 120.00194 * 120.00124 * 5 3 2 7 7 C 1.37875 * 120.00009 * 300.00644 * 5 3 2 8 8 N 1.31516 * 120.00180 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99876 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47202 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46715 * 119.99671 * 9 7 5 12 12 H 1.48501 * 109.47258 * 239.99758 * 9 7 5 13 13 N 1.46494 * 109.47607 * 295.00583 * 3 2 1 14 14 C 1.34777 * 120.00539 * 84.99880 * 13 3 2 15 15 O 1.21365 * 119.99278 * 0.27681 * 14 13 3 16 16 C 1.49345 * 120.00514 * 180.02562 * 14 13 3 17 17 O 1.21380 * 120.00227 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00513 * 179.97438 * 16 14 13 19 19 C 1.39717 * 120.00282 * 174.48011 * 18 16 14 20 20 C 1.38850 * 120.04800 * 335.14118 * 19 18 16 21 21 C 1.38569 * 119.87100 * 179.81762 * 20 19 18 22 22 O 1.35900 * 120.01962 * 180.20732 * 21 20 19 23 23 C 1.42894 * 116.99971 * 0.23038 * 22 21 20 24 24 C 1.38826 * 119.96467 * 0.43417 * 21 20 19 25 25 C 1.50701 * 119.95356 * 179.77047 * 24 21 20 26 26 C 1.38184 * 120.09202 * 359.79601 * 24 21 20 27 27 C 1.38147 * 120.13323 * 359.97438 * 26 24 21 28 28 C 1.50690 * 119.98499 * 179.97438 * 27 26 24 29 29 H 1.08994 * 109.47607 * 59.99449 * 1 2 3 30 30 H 1.09008 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47138 * 299.99090 * 1 2 3 32 32 H 1.09005 * 109.46824 * 240.00588 * 2 1 3 33 33 H 1.08994 * 109.47607 * 120.00551 * 2 1 3 34 34 H 0.96999 * 120.00167 * 179.97438 * 8 7 5 35 35 H 0.97007 * 119.99883 * 265.00006 * 13 3 2 36 36 H 0.97003 * 119.99829 * 354.48478 * 18 16 14 37 37 H 1.07999 * 120.06657 * 0.02562 * 20 19 18 38 38 H 1.09001 * 109.47421 * 299.99925 * 23 22 21 39 39 H 1.08999 * 109.47256 * 60.00037 * 23 22 21 40 40 H 1.09000 * 109.46870 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47024 * 270.02585 * 25 24 21 42 42 H 1.08997 * 109.46876 * 30.02432 * 25 24 21 43 43 H 1.09004 * 109.46612 * 150.02506 * 25 24 21 44 44 H 1.07994 * 119.93159 * 179.97438 * 26 24 21 45 45 H 1.09006 * 109.47610 * 270.02241 * 28 27 26 46 46 H 1.09001 * 109.46997 * 30.02261 * 28 27 26 47 47 H 1.09005 * 109.47357 * 150.02125 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3372 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5454 0.1935 11 1 6.4000 1.6157 2.6091 12 1 6.4963 -0.5190 1.4624 13 7 1.6523 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3668 15 8 -0.3381 2.6366 -0.4317 16 6 0.0396 3.3318 -2.6430 17 8 0.8144 3.3633 -3.5768 18 7 -1.1778 3.8983 -2.7583 19 6 -1.5058 4.6218 -3.9077 20 6 -0.5033 5.2004 -4.6746 21 6 -0.8324 5.9140 -5.8160 22 8 0.1466 6.4780 -6.5711 23 6 1.4935 6.2911 -6.1320 24 6 -2.1631 6.0564 -6.1850 25 6 -2.5211 6.8368 -7.4235 26 6 -3.1599 5.4839 -5.4181 27 6 -2.8359 4.7677 -4.2821 28 6 -3.9256 4.1453 -3.4479 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8294 -0.0613 2.9497 35 1 2.2718 2.1233 -1.9977 36 1 -1.8264 3.8038 -2.0432 37 1 0.5312 5.0918 -4.3840 38 1 1.6126 6.7143 -5.1346 39 1 1.7221 5.2257 -6.1043 40 1 2.1733 6.7904 -6.8224 41 1 -2.6703 7.8845 -7.1623 42 1 -1.7132 6.7551 -8.1506 43 1 -3.4388 6.4352 -7.8534 44 1 -4.1943 5.5966 -5.7074 45 1 -4.2512 4.8550 -2.6872 46 1 -4.7693 3.8857 -4.0873 47 1 -3.5448 3.2450 -2.9656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281085443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:02 Heat of formation + Delta-G solvation = -89.132651 kcal Electronic energy + Delta-G solvation = -29056.361093 eV Core-core repulsion = 25011.468188 eV Total energy + Delta-G solvation = -4044.892905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.15374 -39.94246 -38.55955 -37.67580 -35.58028 -34.91999 -32.61011 -32.34479 -31.42643 -31.03055 -27.99905 -27.54260 -27.05744 -26.14427 -24.21262 -22.99656 -22.32298 -20.78348 -20.31945 -19.55303 -18.92316 -17.99762 -16.93846 -16.20243 -16.14711 -15.86876 -15.67391 -15.41510 -15.14753 -14.95875 -14.36607 -14.30375 -13.89480 -13.74541 -13.71218 -13.34770 -13.25629 -12.80094 -12.79114 -12.27991 -12.19410 -12.04189 -11.99073 -11.75360 -11.64764 -11.46770 -11.36505 -11.24038 -11.08303 -10.95238 -10.82224 -10.39474 -10.31424 -10.15316 -9.74979 -9.18437 -9.11624 -8.61883 -8.52600 -8.10186 -7.84562 -6.22119 -4.31951 0.99694 1.28176 1.87554 2.60092 3.18185 3.19368 3.27795 3.31034 3.47265 3.72532 4.00358 4.28795 4.61882 4.79610 4.81571 4.95237 5.02005 5.10196 5.10415 5.14400 5.24138 5.34490 5.43423 5.45621 5.48623 5.54898 5.67321 5.75473 5.93904 5.99732 6.26601 6.26841 6.30369 6.31200 6.33638 6.50076 6.70280 6.89152 6.95171 7.07668 7.13265 7.21877 7.28350 7.43930 7.58283 7.72223 7.82609 8.03082 8.37030 8.55690 8.80087 9.35102 10.83337 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017140 B = 0.002790 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.180305 B =10032.192328 C =11417.785489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.666 5.666 14 C 0.494 3.506 15 O -0.528 6.528 16 C 0.506 3.494 17 O -0.504 6.504 18 N -0.645 5.645 19 C 0.185 3.815 20 C -0.215 4.215 21 C 0.141 3.859 22 O -0.314 6.314 23 C 0.026 3.974 24 C -0.136 4.136 25 C -0.099 4.099 26 C -0.063 4.063 27 C -0.148 4.148 28 C -0.112 4.112 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.104 0.896 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.424 0.576 37 H 0.155 0.845 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.132 0.868 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.583 10.062 -14.762 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.315 5.315 14 C 0.272 3.728 15 O -0.407 6.407 16 C 0.290 3.710 17 O -0.378 6.378 18 N -0.291 5.291 19 C 0.090 3.910 20 C -0.236 4.236 21 C 0.095 3.905 22 O -0.227 6.227 23 C -0.069 4.069 24 C -0.138 4.138 25 C -0.156 4.156 26 C -0.082 4.082 27 C -0.151 4.151 28 C -0.169 4.169 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.236 0.764 36 H 0.263 0.737 37 H 0.172 0.828 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.150 0.850 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.478 10.015 -14.648 21.133 hybrid contribution 1.198 -0.255 0.363 1.277 sum -10.281 9.760 -14.285 20.125 Atomic orbital electron populations 1.21856 0.98305 0.98483 1.00989 1.21966 0.92655 0.99357 1.02818 1.19037 0.94849 0.89406 0.80048 0.92688 1.21232 0.90264 1.39436 1.06585 0.91730 1.24874 0.98864 0.94577 0.95228 1.69889 1.35214 1.37415 1.09342 0.86357 0.84486 0.77877 0.78209 1.19628 1.20807 1.20767 1.46470 1.13352 1.52401 1.19261 1.19565 0.84621 0.81573 0.86999 1.90750 1.51310 1.59306 1.39286 1.21070 0.81727 0.78793 0.89457 1.90672 1.50957 1.56546 1.39644 1.43300 1.16288 1.50245 1.19303 1.17323 0.92689 0.93061 0.87974 1.21455 1.01519 1.03059 0.97529 1.18608 0.88286 0.93250 0.90311 1.86021 1.15279 1.71408 1.50005 1.23090 0.80277 1.02573 1.01006 1.19194 0.89830 1.04635 1.00116 1.20543 1.01678 0.98891 0.94507 1.20490 0.98530 0.96037 0.93133 1.19510 0.92529 1.04458 0.98625 1.20686 0.96584 1.00319 0.99278 0.94693 0.95407 0.92903 0.94637 0.87795 0.92452 0.76408 0.73722 0.82765 0.92650 0.91976 0.88313 0.91686 0.91344 0.91915 0.85024 0.91116 0.91081 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.52 37.16 0.32 -2.60 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.45 2.24 -69.09 -0.15 6.30 16 4 H 0.06 1.51 7.57 -51.93 -0.39 1.11 16 5 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.81 11.29 55.43 0.63 -23.19 16 9 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.67 -13.71 5.01 -55.40 -0.28 -13.99 16 14 C 0.49 9.49 6.44 -11.63 -0.07 9.41 16 15 O -0.53 -10.96 13.64 5.48 0.07 -10.88 16 16 C 0.51 8.47 7.69 -11.63 -0.09 8.38 16 17 O -0.50 -8.92 13.64 5.47 0.07 -8.84 16 18 N -0.65 -9.12 4.96 -10.31 -0.05 -9.17 16 19 C 0.19 2.53 6.41 -83.77 -0.54 1.99 16 20 C -0.21 -3.06 7.70 -39.23 -0.30 -3.36 16 21 C 0.14 1.85 6.66 -39.24 -0.26 1.59 16 22 O -0.31 -3.84 9.53 -19.43 -0.19 -4.03 16 23 C 0.03 0.26 9.81 101.05 0.99 1.25 16 24 C -0.14 -1.54 5.90 -104.42 -0.62 -2.16 16 25 C -0.10 -0.87 9.79 36.01 0.35 -0.52 16 26 C -0.06 -0.65 9.34 -39.63 -0.37 -1.02 16 27 C -0.15 -1.68 5.90 -104.40 -0.62 -2.30 16 28 C -0.11 -0.98 9.44 36.00 0.34 -0.64 16 29 H 0.03 0.71 5.65 -51.93 -0.29 0.41 16 30 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.40 7.75 8.01 -40.82 -0.33 7.42 16 36 H 0.42 5.37 6.87 -40.82 -0.28 5.09 16 37 H 0.16 2.34 4.02 -52.49 -0.21 2.13 16 38 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 39 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.63 7.53 -51.93 -0.39 0.24 16 43 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 47 H 0.06 0.60 6.98 -51.93 -0.36 0.24 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -29.01 380.98 -7.27 -36.28 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -6.69 Total: 12.17 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.56 Total: 0.77 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.30 Total: -46.35 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.04 Total: -23.76 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.01 -7.27 -36.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281085443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.854 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds