Wall clock time and date at job start Tue Mar 31 2020 18:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46934 * 2 1 4 4 H 1.09001 * 109.47365 * 55.00469 * 3 2 1 5 5 C 1.50701 * 109.47179 * 175.00083 * 3 2 1 6 6 H 1.08001 * 120.00194 * 120.00124 * 5 3 2 7 7 C 1.37875 * 120.00009 * 300.00644 * 5 3 2 8 8 N 1.31516 * 120.00180 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99876 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47202 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46715 * 119.99671 * 9 7 5 12 12 H 1.48501 * 109.47258 * 239.99758 * 9 7 5 13 13 N 1.46494 * 109.47607 * 295.00583 * 3 2 1 14 14 C 1.34777 * 120.00539 * 84.99880 * 13 3 2 15 15 O 1.21365 * 119.99278 * 0.27681 * 14 13 3 16 16 C 1.49345 * 120.00514 * 180.02562 * 14 13 3 17 17 O 1.21380 * 120.00227 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00513 * 179.97438 * 16 14 13 19 19 C 1.39717 * 120.00282 * 174.48011 * 18 16 14 20 20 C 1.38850 * 120.04800 * 335.14118 * 19 18 16 21 21 C 1.38569 * 119.87100 * 179.81762 * 20 19 18 22 22 O 1.35900 * 120.01962 * 180.20732 * 21 20 19 23 23 C 1.42894 * 116.99971 * 0.23038 * 22 21 20 24 24 C 1.38826 * 119.96467 * 0.43417 * 21 20 19 25 25 C 1.50701 * 119.95356 * 179.77047 * 24 21 20 26 26 C 1.38184 * 120.09202 * 359.79601 * 24 21 20 27 27 C 1.38147 * 120.13323 * 359.97438 * 26 24 21 28 28 C 1.50690 * 119.98499 * 179.97438 * 27 26 24 29 29 H 1.08994 * 109.47607 * 59.99449 * 1 2 3 30 30 H 1.09008 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47138 * 299.99090 * 1 2 3 32 32 H 1.09005 * 109.46824 * 240.00588 * 2 1 3 33 33 H 1.08994 * 109.47607 * 120.00551 * 2 1 3 34 34 H 0.96999 * 120.00167 * 179.97438 * 8 7 5 35 35 H 0.97007 * 119.99883 * 265.00006 * 13 3 2 36 36 H 0.97003 * 119.99829 * 354.48478 * 18 16 14 37 37 H 1.07999 * 120.06657 * 0.02562 * 20 19 18 38 38 H 1.09001 * 109.47421 * 299.99925 * 23 22 21 39 39 H 1.08999 * 109.47256 * 60.00037 * 23 22 21 40 40 H 1.09000 * 109.46870 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47024 * 270.02585 * 25 24 21 42 42 H 1.08997 * 109.46876 * 30.02432 * 25 24 21 43 43 H 1.09004 * 109.46612 * 150.02506 * 25 24 21 44 44 H 1.07994 * 119.93159 * 179.97438 * 26 24 21 45 45 H 1.09006 * 109.47610 * 270.02241 * 28 27 26 46 46 H 1.09001 * 109.46997 * 30.02261 * 28 27 26 47 47 H 1.09005 * 109.47357 * 150.02125 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3372 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5454 0.1935 11 1 6.4000 1.6157 2.6091 12 1 6.4963 -0.5190 1.4624 13 7 1.6523 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3668 15 8 -0.3381 2.6366 -0.4317 16 6 0.0396 3.3318 -2.6430 17 8 0.8144 3.3633 -3.5768 18 7 -1.1778 3.8983 -2.7583 19 6 -1.5058 4.6218 -3.9077 20 6 -0.5033 5.2004 -4.6746 21 6 -0.8324 5.9140 -5.8160 22 8 0.1466 6.4780 -6.5711 23 6 1.4935 6.2911 -6.1320 24 6 -2.1631 6.0564 -6.1850 25 6 -2.5211 6.8368 -7.4235 26 6 -3.1599 5.4839 -5.4181 27 6 -2.8359 4.7677 -4.2821 28 6 -3.9256 4.1453 -3.4479 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8294 -0.0613 2.9497 35 1 2.2718 2.1233 -1.9977 36 1 -1.8264 3.8038 -2.0432 37 1 0.5312 5.0918 -4.3840 38 1 1.6126 6.7143 -5.1346 39 1 1.7221 5.2257 -6.1043 40 1 2.1733 6.7904 -6.8224 41 1 -2.6703 7.8845 -7.1623 42 1 -1.7132 6.7551 -8.1506 43 1 -3.4388 6.4352 -7.8534 44 1 -4.1943 5.5966 -5.7074 45 1 -4.2512 4.8550 -2.6872 46 1 -4.7693 3.8857 -4.0873 47 1 -3.5448 3.2450 -2.9656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281085443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:01 Heat of formation + Delta-G solvation = -107.205141 kcal Electronic energy + Delta-G solvation = -29057.144775 eV Core-core repulsion = 25011.468188 eV Total energy + Delta-G solvation = -4045.676587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.34633 -41.12566 -39.92650 -38.72805 -37.23828 -36.15417 -34.36772 -33.33964 -32.85970 -32.34046 -29.26940 -28.81292 -28.05732 -27.17003 -25.66736 -24.60181 -23.41798 -21.95039 -21.60922 -21.24428 -20.21565 -19.24054 -18.32336 -17.82688 -17.48626 -17.00231 -16.85704 -16.70982 -16.59264 -16.02375 -16.00997 -15.52646 -15.09418 -14.78169 -14.69166 -14.63332 -14.43522 -13.99928 -13.89971 -13.52832 -13.51996 -13.23115 -13.03046 -13.00359 -12.89612 -12.83326 -12.75340 -12.72185 -12.40042 -12.20825 -12.13500 -12.12276 -11.94669 -11.61729 -11.12627 -11.11790 -10.64294 -10.54884 -9.88193 -9.50249 -8.78158 -8.20827 -6.37761 -0.13852 0.37290 0.62032 1.25800 1.42588 1.45313 1.56286 2.09218 2.32507 2.37701 2.67498 2.70792 3.09268 3.43313 3.80691 3.92615 3.96318 4.12844 4.29728 4.32292 4.39082 4.46683 4.52968 4.53980 4.68826 4.69114 4.70385 4.78558 4.83000 4.91362 4.99670 5.02824 5.10829 5.18414 5.20417 5.32222 5.36597 5.36667 5.40010 5.50909 5.54276 5.66140 5.76875 5.80829 5.97499 6.09143 6.35370 6.48698 6.64224 6.73583 7.05846 7.34132 8.84618 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017140 B = 0.002790 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.180305 B =10032.192328 C =11417.785489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.553 4.553 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.669 5.669 14 C 0.496 3.504 15 O -0.544 6.544 16 C 0.513 3.487 17 O -0.517 6.517 18 N -0.630 5.630 19 C 0.155 3.845 20 C -0.232 4.232 21 C 0.122 3.878 22 O -0.320 6.320 23 C 0.024 3.976 24 C -0.136 4.136 25 C -0.098 4.098 26 C -0.060 4.060 27 C -0.142 4.142 28 C -0.113 4.113 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.267 0.733 35 H 0.408 0.592 36 H 0.430 0.570 37 H 0.138 0.862 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.127 0.873 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.085 0.915 44 H 0.168 0.832 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.991 10.789 -16.510 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.591 4.591 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.319 5.319 14 C 0.276 3.724 15 O -0.423 6.423 16 C 0.296 3.704 17 O -0.392 6.392 18 N -0.276 5.276 19 C 0.061 3.939 20 C -0.252 4.252 21 C 0.076 3.924 22 O -0.234 6.234 23 C -0.070 4.070 24 C -0.138 4.138 25 C -0.154 4.154 26 C -0.078 4.078 27 C -0.145 4.145 28 C -0.169 4.169 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.243 0.757 36 H 0.270 0.730 37 H 0.155 0.845 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.145 0.855 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.186 0.814 45 H 0.103 0.897 46 H 0.112 0.888 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.919 10.765 -16.423 23.506 hybrid contribution 1.538 -0.398 0.855 1.805 sum -11.381 10.367 -15.568 21.894 Atomic orbital electron populations 1.21710 0.96516 0.99754 1.00406 1.21822 0.94204 0.98508 1.01714 1.18658 0.94129 0.89593 0.80239 0.96622 1.21537 0.91187 1.39483 1.06883 0.91416 1.25675 1.03156 0.94177 0.94891 1.70012 1.36943 1.37986 1.09795 0.85354 0.79253 0.77931 0.78160 1.18918 1.20743 1.20282 1.46236 1.14266 1.52947 1.18405 1.19936 0.83814 0.80864 0.87809 1.90735 1.51639 1.59686 1.40259 1.20414 0.82688 0.79219 0.88120 1.90681 1.51605 1.57348 1.39591 1.43119 1.15187 1.49390 1.19881 1.17551 0.93865 0.94383 0.88134 1.21424 1.01017 1.04252 0.98543 1.18866 0.89393 0.93823 0.90308 1.86007 1.15845 1.71415 1.50114 1.23208 0.79994 1.02124 1.01717 1.19655 0.89258 1.03998 1.00860 1.20599 1.02449 0.99211 0.93168 1.20923 1.00040 0.94678 0.92127 1.19859 0.91981 1.03673 0.98942 1.20774 0.96351 1.00124 0.99663 0.94181 0.93159 0.94454 0.94191 0.90244 0.92342 0.75658 0.72962 0.84471 0.93042 0.93235 0.85512 0.90665 0.92072 0.89593 0.81414 0.89734 0.88814 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.52 71.98 0.61 -4.71 16 2 C -0.12 -5.86 5.45 30.59 0.17 -5.70 16 3 C 0.28 13.73 2.24 44.24 0.10 13.82 16 4 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 5 C -0.55 -28.87 8.73 25.60 0.22 -28.65 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -50.18 11.29 21.45 0.24 -49.94 16 9 Si 0.97 41.54 29.54 68.60 2.03 43.57 16 10 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 13 N -0.67 -28.22 5.01 -447.55 -2.24 -30.47 16 14 C 0.50 19.43 6.44 87.24 0.56 19.99 16 15 O -0.54 -23.02 13.64 -3.29 -0.04 -23.06 16 16 C 0.51 17.41 7.69 87.24 0.67 18.08 16 17 O -0.52 -18.68 13.64 -3.34 -0.05 -18.73 16 18 N -0.63 -17.70 4.96 -304.89 -1.51 -19.21 16 19 C 0.16 4.15 6.41 38.20 0.24 4.40 16 20 C -0.23 -6.65 7.70 22.50 0.17 -6.48 16 21 C 0.12 3.12 6.66 22.49 0.15 3.27 16 22 O -0.32 -7.73 9.53 -92.43 -0.88 -8.61 16 23 C 0.02 0.49 9.81 113.37 1.11 1.60 16 24 C -0.14 -2.79 5.90 -19.74 -0.12 -2.91 16 25 C -0.10 -1.44 9.79 71.24 0.70 -0.74 16 26 C -0.06 -1.03 9.34 22.24 0.21 -0.82 16 27 C -0.14 -2.90 5.90 -19.72 -0.12 -3.02 16 28 C -0.11 -1.66 9.44 71.23 0.67 -0.99 16 29 H 0.04 1.61 5.65 -2.39 -0.01 1.60 16 30 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.04 1.66 7.85 -2.39 -0.02 1.64 16 32 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.08 4.19 5.95 -2.39 -0.01 4.18 16 34 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 35 H 0.41 16.09 8.01 -92.70 -0.74 15.35 16 36 H 0.43 10.71 6.87 -92.71 -0.64 10.07 16 37 H 0.14 4.35 4.02 -2.91 -0.01 4.34 16 38 H 0.05 1.06 7.65 -2.39 -0.02 1.04 16 39 H 0.05 1.11 7.67 -2.39 -0.02 1.09 16 40 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.01 7.53 -2.39 -0.02 0.99 16 43 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 44 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.09 0.98 8.08 -2.39 -0.02 0.96 16 47 H 0.06 0.95 6.98 -2.38 -0.02 0.93 16 Total: -1.00 -63.71 380.98 2.99 -60.72 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: -0.36 Total: 36.99 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.81 Total: 8.75 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -3.51 Total: -99.62 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -0.97 Total: -50.40 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -63.71 2.99 -60.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281085443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.486 kcal (2) G-P(sol) polarization free energy of solvation -63.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds