Wall clock time and date at job start Tue Mar 31 2020 18:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47139 * 2 1 4 4 H 1.09004 * 109.47648 * 305.00370 * 3 2 1 5 5 C 1.52999 * 109.47508 * 185.00094 * 3 2 1 6 6 O 1.42903 * 109.47241 * 65.00108 * 3 2 1 7 7 C 1.35949 * 117.00106 * 203.12445 * 6 3 2 8 8 C 1.38754 * 119.97733 * 177.83735 * 7 6 3 9 9 C 1.38061 * 120.01900 * 180.27766 * 8 7 6 10 10 C 1.38918 * 119.97926 * 359.49856 * 9 8 7 11 11 N 1.39861 * 120.02083 * 180.27098 * 10 9 8 12 12 C 1.34775 * 120.00206 * 324.34672 * 11 10 9 13 13 O 1.21388 * 120.00298 * 4.94369 * 12 11 10 14 14 C 1.49340 * 120.00345 * 184.93815 * 12 11 10 15 15 O 1.21365 * 119.99507 * 354.31622 * 14 12 11 16 16 N 1.34771 * 120.00274 * 174.31786 * 14 12 11 17 17 C 1.46502 * 119.99838 * 354.20818 * 16 14 12 18 18 C 1.46492 * 120.00079 * 174.21243 * 16 14 12 19 19 C 1.50704 * 109.47210 * 89.99806 * 18 16 14 20 20 H 1.07994 * 120.00120 * 359.97438 * 19 18 16 21 21 C 1.37882 * 119.99668 * 179.97438 * 19 18 16 22 22 N 1.31511 * 120.00345 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99644 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47203 * 60.00260 * 23 21 19 25 25 H 1.48501 * 109.47394 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47325 * 300.00303 * 23 21 19 27 27 C 1.38921 * 119.95997 * 0.25415 * 10 9 8 28 28 C 1.38060 * 119.97704 * 359.97438 * 27 10 9 29 29 H 1.08996 * 109.47118 * 59.99675 * 1 2 3 30 30 H 1.09000 * 109.46990 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47062 * 299.99679 * 1 2 3 32 32 H 1.09008 * 109.46994 * 240.00501 * 2 1 3 33 33 H 1.09000 * 109.47591 * 120.00192 * 2 1 3 34 34 H 1.09008 * 109.47279 * 60.00043 * 5 3 2 35 35 H 1.09003 * 109.47949 * 179.97438 * 5 3 2 36 36 H 1.09008 * 109.47346 * 300.00583 * 5 3 2 37 37 H 1.08004 * 119.99235 * 0.02749 * 8 7 6 38 38 H 1.07997 * 120.01018 * 179.77095 * 9 8 7 39 39 H 0.97004 * 120.00195 * 144.34271 * 11 10 9 40 40 H 1.08997 * 109.47097 * 85.56912 * 17 16 14 41 41 H 1.09002 * 109.46997 * 205.56927 * 17 16 14 42 42 H 1.08997 * 109.47269 * 325.57307 * 17 16 14 43 43 H 1.09005 * 109.47168 * 209.99726 * 18 16 14 44 44 H 1.08998 * 109.47513 * 329.99422 * 18 16 14 45 45 H 0.96995 * 120.00118 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.01087 * 180.02562 * 27 10 9 47 47 H 1.08004 * 119.98877 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 8 1.6620 2.0814 1.2211 7 6 1.5903 3.4389 1.2109 8 6 1.1858 4.1204 2.3498 9 6 1.1072 5.4987 2.3387 10 6 1.4431 6.2039 1.1899 11 7 1.3692 7.6005 1.1794 12 6 0.3939 8.2289 1.8652 13 8 -0.3655 7.5897 2.5638 14 6 0.2475 9.7118 1.7657 15 8 1.0673 10.3626 1.1514 16 7 -0.7949 10.3273 2.3581 17 6 -1.8513 9.5334 2.9906 18 6 -0.8717 11.7902 2.3695 19 6 -1.6123 12.2639 1.1455 20 1 -1.9878 11.5470 0.4304 21 6 -1.8104 13.6126 0.9386 22 7 -1.3527 14.4857 1.8091 23 14 -2.7278 14.1998 -0.5789 24 1 -4.0998 13.6316 -0.5788 25 1 -2.8058 15.6828 -0.5674 26 1 -2.0067 13.7520 -1.7975 27 6 1.8529 5.5210 0.0516 28 6 1.9264 4.1424 0.0632 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8532 0.9571 -1.0572 35 1 3.9282 2.4721 -0.1262 36 1 3.9995 0.9052 0.7160 37 1 0.9285 3.5722 3.2442 38 1 0.7888 6.0288 3.2241 39 1 2.0200 8.1169 0.6786 40 1 -1.5603 9.2898 4.0124 41 1 -2.7783 10.1067 3.0036 42 1 -2.0012 8.6129 2.4264 43 1 -1.4004 12.1193 3.2641 44 1 0.1355 12.2069 2.3688 45 1 -1.4918 15.4345 1.6634 46 1 2.1147 6.0684 -0.8418 47 1 2.2454 3.6114 -0.8215 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283296096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:13 Heat of formation + Delta-G solvation = -74.058639 kcal Electronic energy + Delta-G solvation = -28113.273503 eV Core-core repulsion = 24069.034256 eV Total energy + Delta-G solvation = -4044.239247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95570 -40.20228 -38.56131 -37.41750 -35.53202 -34.68065 -33.78465 -32.58730 -31.33501 -30.25067 -29.04831 -28.00764 -26.19144 -24.75728 -24.18510 -23.55056 -22.66718 -21.72253 -20.74897 -19.46189 -18.59261 -17.67547 -17.12536 -16.64700 -16.13757 -15.80320 -15.72919 -15.37546 -15.10481 -14.87571 -14.50140 -14.33577 -14.13882 -13.84568 -13.69593 -13.40774 -13.27355 -13.08563 -12.91517 -12.68039 -12.38217 -12.21057 -12.17972 -12.08499 -11.92444 -11.49597 -11.42769 -11.30220 -11.11785 -10.99364 -10.83891 -10.75646 -10.58875 -10.21619 -9.94982 -9.70905 -9.17748 -8.81129 -8.49026 -7.89983 -7.76775 -6.10377 -4.15683 1.10922 1.19343 1.94021 2.70532 2.95771 3.30085 3.34043 3.37270 3.55161 3.77049 4.03836 4.23877 4.40462 4.45157 4.55868 4.65807 4.71907 4.78617 4.87140 5.02512 5.12871 5.14801 5.20545 5.24249 5.30119 5.40610 5.50173 5.53447 5.63065 5.70275 5.83084 5.85726 5.90401 5.92304 6.12138 6.14443 6.20119 6.28595 6.47503 6.71634 6.81725 7.19866 7.25799 7.26368 7.35691 7.81941 7.91562 8.12180 8.19178 8.61429 8.88518 9.49101 10.97794 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.002041 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.742638 B =13712.859857 C =13867.396738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.080 3.920 4 H 0.073 0.927 5 C -0.182 4.182 6 O -0.308 6.308 7 C 0.116 3.884 8 C -0.135 4.135 9 C -0.079 4.079 10 C 0.110 3.890 11 N -0.650 5.650 12 C 0.508 3.492 13 O -0.505 6.505 14 C 0.494 3.506 15 O -0.522 6.522 16 N -0.563 5.563 17 C 0.081 3.919 18 C 0.243 3.757 19 C -0.529 4.529 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.893 5.893 23 Si 0.901 3.099 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.101 4.101 28 C -0.193 4.193 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.133 0.867 38 H 0.147 0.853 39 H 0.422 0.578 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.047 0.953 45 H 0.265 0.735 46 H 0.130 0.870 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.377 -27.383 -2.410 28.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.091 0.909 5 C -0.239 4.239 6 O -0.222 6.222 7 C 0.071 3.929 8 C -0.154 4.154 9 C -0.099 4.099 10 C 0.016 3.984 11 N -0.297 5.297 12 C 0.292 3.708 13 O -0.379 6.379 14 C 0.274 3.726 15 O -0.400 6.400 16 N -0.294 5.294 17 C -0.062 4.062 18 C 0.124 3.876 19 C -0.568 4.568 20 H 0.077 0.923 21 C -0.140 4.140 22 N -0.532 5.532 23 Si 0.729 3.271 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.122 4.122 28 C -0.212 4.212 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.260 0.740 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.148 0.852 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.179 -27.324 -2.015 28.323 hybrid contribution -0.157 0.743 -1.336 1.536 sum 7.023 -26.581 -3.350 27.697 Atomic orbital electron populations 1.21768 0.95021 1.01876 1.02564 1.21621 0.96943 0.93849 1.03120 1.22492 0.94954 0.93972 0.86246 0.90868 1.22398 0.95309 1.03297 1.02931 1.86118 1.83891 1.16480 1.35751 1.18973 0.97072 0.82418 0.94475 1.20328 1.04388 0.93270 0.97411 1.21163 0.97995 0.92976 0.97737 1.17689 1.03794 0.82535 0.94349 1.43204 1.30842 1.04755 1.50939 1.20947 0.80135 0.90018 0.79750 1.90680 1.41991 1.67757 1.37487 1.19551 0.84136 0.86556 0.82345 1.90748 1.42808 1.65842 1.40587 1.48118 1.19902 1.09988 1.51386 1.21997 0.90719 0.95935 0.97571 1.19512 0.99089 0.71118 0.97842 1.21332 1.36164 0.92070 1.07244 0.92310 1.24933 0.95769 0.96459 0.96863 1.69913 1.45646 1.02054 1.35588 0.86509 0.80084 0.77468 0.83081 1.20160 1.21117 1.20127 1.20751 1.01191 0.93679 0.96550 1.21023 1.07652 0.94282 0.98274 0.92775 0.92466 0.91812 0.90143 0.90790 0.91083 0.91622 0.91410 0.84913 0.83526 0.74035 0.92983 0.91099 0.90344 0.94099 0.93537 0.92520 0.85202 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.81 37.16 0.36 -0.63 16 2 C -0.12 -0.69 5.64 -26.73 -0.15 -0.84 16 3 C 0.08 0.57 2.24 -26.73 -0.06 0.51 16 4 H 0.07 0.50 6.27 -51.93 -0.33 0.17 16 5 C -0.18 -1.10 9.16 37.16 0.34 -0.76 16 6 O -0.31 -3.07 9.34 -19.58 -0.18 -3.26 16 7 C 0.12 1.27 6.58 -39.20 -0.26 1.01 16 8 C -0.13 -1.56 9.98 -39.46 -0.39 -1.96 16 9 C -0.08 -1.02 8.69 -39.39 -0.34 -1.37 16 10 C 0.11 1.44 6.29 -83.69 -0.53 0.91 16 11 N -0.65 -9.29 5.32 -10.27 -0.05 -9.34 16 12 C 0.51 8.76 7.54 -11.64 -0.09 8.67 16 13 O -0.50 -8.81 10.84 5.46 0.06 -8.75 16 14 C 0.49 10.35 7.71 -11.64 -0.09 10.26 16 15 O -0.52 -12.29 16.13 5.48 0.09 -12.20 16 16 N -0.56 -12.30 2.86 -183.51 -0.52 -12.83 16 17 C 0.08 1.46 9.25 59.85 0.55 2.01 16 18 C 0.24 6.28 5.10 -5.20 -0.03 6.25 16 19 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 20 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 23 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C -0.10 -1.10 9.96 -39.39 -0.39 -1.50 16 28 C -0.19 -1.93 8.19 -39.46 -0.32 -2.25 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.50 7.82 -51.93 -0.41 0.09 16 32 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.31 8.14 -51.92 -0.42 -0.12 16 35 H 0.06 0.44 6.91 -51.93 -0.36 0.08 16 36 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 37 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 38 H 0.15 2.04 6.25 -52.49 -0.33 1.71 16 39 H 0.42 5.48 8.30 -40.82 -0.34 5.14 16 40 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 41 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 42 H 0.08 1.37 5.91 -51.93 -0.31 1.06 16 43 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 44 H 0.05 1.32 7.51 -51.93 -0.39 0.93 16 45 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 47 H 0.13 1.02 5.45 -52.48 -0.29 0.73 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -31.93 389.37 -7.77 -39.70 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.93 Total: 2.72 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -1.81 Total: 6.83 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.16 Total: -47.51 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.04 Total: -24.20 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.93 -7.77 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283296096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.364 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds