Wall clock time and date at job start Tue Mar 31 2020 18:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47139 * 2 1 4 4 H 1.09004 * 109.47648 * 305.00370 * 3 2 1 5 5 C 1.52999 * 109.47508 * 185.00094 * 3 2 1 6 6 O 1.42903 * 109.47241 * 65.00108 * 3 2 1 7 7 C 1.35949 * 117.00106 * 203.12445 * 6 3 2 8 8 C 1.38754 * 119.97733 * 177.83735 * 7 6 3 9 9 C 1.38061 * 120.01900 * 180.27766 * 8 7 6 10 10 C 1.38918 * 119.97926 * 359.49856 * 9 8 7 11 11 N 1.39861 * 120.02083 * 180.27098 * 10 9 8 12 12 C 1.34775 * 120.00206 * 324.34672 * 11 10 9 13 13 O 1.21388 * 120.00298 * 4.94369 * 12 11 10 14 14 C 1.49340 * 120.00345 * 184.93815 * 12 11 10 15 15 O 1.21365 * 119.99507 * 354.31622 * 14 12 11 16 16 N 1.34771 * 120.00274 * 174.31786 * 14 12 11 17 17 C 1.46502 * 119.99838 * 354.20818 * 16 14 12 18 18 C 1.46492 * 120.00079 * 174.21243 * 16 14 12 19 19 C 1.50704 * 109.47210 * 89.99806 * 18 16 14 20 20 H 1.07994 * 120.00120 * 359.97438 * 19 18 16 21 21 C 1.37882 * 119.99668 * 179.97438 * 19 18 16 22 22 N 1.31511 * 120.00345 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99644 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47203 * 60.00260 * 23 21 19 25 25 H 1.48501 * 109.47394 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47325 * 300.00303 * 23 21 19 27 27 C 1.38921 * 119.95997 * 0.25415 * 10 9 8 28 28 C 1.38060 * 119.97704 * 359.97438 * 27 10 9 29 29 H 1.08996 * 109.47118 * 59.99675 * 1 2 3 30 30 H 1.09000 * 109.46990 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47062 * 299.99679 * 1 2 3 32 32 H 1.09008 * 109.46994 * 240.00501 * 2 1 3 33 33 H 1.09000 * 109.47591 * 120.00192 * 2 1 3 34 34 H 1.09008 * 109.47279 * 60.00043 * 5 3 2 35 35 H 1.09003 * 109.47949 * 179.97438 * 5 3 2 36 36 H 1.09008 * 109.47346 * 300.00583 * 5 3 2 37 37 H 1.08004 * 119.99235 * 0.02749 * 8 7 6 38 38 H 1.07997 * 120.01018 * 179.77095 * 9 8 7 39 39 H 0.97004 * 120.00195 * 144.34271 * 11 10 9 40 40 H 1.08997 * 109.47097 * 85.56912 * 17 16 14 41 41 H 1.09002 * 109.46997 * 205.56927 * 17 16 14 42 42 H 1.08997 * 109.47269 * 325.57307 * 17 16 14 43 43 H 1.09005 * 109.47168 * 209.99726 * 18 16 14 44 44 H 1.08998 * 109.47513 * 329.99422 * 18 16 14 45 45 H 0.96995 * 120.00118 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.01087 * 180.02562 * 27 10 9 47 47 H 1.08004 * 119.98877 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 8 1.6620 2.0814 1.2211 7 6 1.5903 3.4389 1.2109 8 6 1.1858 4.1204 2.3498 9 6 1.1072 5.4987 2.3387 10 6 1.4431 6.2039 1.1899 11 7 1.3692 7.6005 1.1794 12 6 0.3939 8.2289 1.8652 13 8 -0.3655 7.5897 2.5638 14 6 0.2475 9.7118 1.7657 15 8 1.0673 10.3626 1.1514 16 7 -0.7949 10.3273 2.3581 17 6 -1.8513 9.5334 2.9906 18 6 -0.8717 11.7902 2.3695 19 6 -1.6123 12.2639 1.1455 20 1 -1.9878 11.5470 0.4304 21 6 -1.8104 13.6126 0.9386 22 7 -1.3527 14.4857 1.8091 23 14 -2.7278 14.1998 -0.5789 24 1 -4.0998 13.6316 -0.5788 25 1 -2.8058 15.6828 -0.5674 26 1 -2.0067 13.7520 -1.7975 27 6 1.8529 5.5210 0.0516 28 6 1.9264 4.1424 0.0632 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8532 0.9571 -1.0572 35 1 3.9282 2.4721 -0.1262 36 1 3.9995 0.9052 0.7160 37 1 0.9285 3.5722 3.2442 38 1 0.7888 6.0288 3.2241 39 1 2.0200 8.1169 0.6786 40 1 -1.5603 9.2898 4.0124 41 1 -2.7783 10.1067 3.0036 42 1 -2.0012 8.6129 2.4264 43 1 -1.4004 12.1193 3.2641 44 1 0.1355 12.2069 2.3688 45 1 -1.4918 15.4345 1.6634 46 1 2.1147 6.0684 -0.8418 47 1 2.2454 3.6114 -0.8215 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283296096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:13 Heat of formation + Delta-G solvation = -93.377993 kcal Electronic energy + Delta-G solvation = -28114.111253 eV Core-core repulsion = 24069.034256 eV Total energy + Delta-G solvation = -4045.076997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.17534 -41.19159 -39.90844 -38.56729 -37.07395 -35.76496 -34.78119 -34.56233 -32.16169 -30.79768 -30.28986 -29.75361 -27.72636 -26.31481 -25.05145 -24.35963 -24.02951 -22.74576 -21.67024 -20.79501 -19.36456 -19.00288 -18.72987 -18.42977 -17.41301 -17.15464 -16.92027 -16.66799 -16.23546 -16.13455 -15.76726 -15.31239 -15.07844 -14.84802 -14.79703 -14.38967 -14.32851 -14.15035 -13.95082 -13.90636 -13.81944 -13.52339 -13.39921 -13.18996 -12.92043 -12.81829 -12.67883 -12.60954 -12.31301 -12.22861 -12.13584 -11.97704 -11.77889 -11.70332 -11.44267 -10.95231 -10.65262 -10.40360 -10.01179 -9.64388 -8.78052 -8.24684 -6.39289 0.00914 0.31627 0.62194 1.31499 1.39388 1.42264 1.50470 2.11674 2.25985 2.37172 2.60031 2.74838 3.05776 3.29233 3.72067 3.83401 3.87570 4.00129 4.11479 4.19498 4.35889 4.39306 4.42463 4.51067 4.58755 4.68673 4.69946 4.72025 4.85590 4.89802 4.97232 4.98391 5.01120 5.09652 5.12869 5.20524 5.23845 5.28440 5.29089 5.34693 5.42171 5.43813 5.68384 5.76784 5.97968 5.99613 6.38001 6.49010 6.64808 6.72392 6.97725 7.30817 8.82709 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.002041 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.742638 B =13712.859857 C =13867.396738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C 0.071 3.929 4 H 0.080 0.920 5 C -0.179 4.179 6 O -0.319 6.319 7 C 0.120 3.880 8 C -0.145 4.145 9 C -0.088 4.088 10 C 0.084 3.916 11 N -0.634 5.634 12 C 0.518 3.482 13 O -0.508 6.508 14 C 0.488 3.512 15 O -0.555 6.555 16 N -0.573 5.573 17 C 0.085 3.915 18 C 0.256 3.744 19 C -0.547 4.547 20 H 0.053 0.947 21 C 0.011 3.989 22 N -0.924 5.924 23 Si 0.969 3.031 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.275 1.275 27 C -0.093 4.093 28 C -0.188 4.188 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.427 0.573 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.035 0.965 44 H 0.012 0.988 45 H 0.269 0.731 46 H 0.151 0.849 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.363 -29.642 -4.291 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C 0.015 3.985 4 H 0.098 0.902 5 C -0.237 4.237 6 O -0.233 6.233 7 C 0.074 3.926 8 C -0.164 4.164 9 C -0.108 4.108 10 C -0.009 4.009 11 N -0.281 5.281 12 C 0.300 3.700 13 O -0.384 6.384 14 C 0.270 3.730 15 O -0.435 6.435 16 N -0.303 5.303 17 C -0.057 4.057 18 C 0.136 3.864 19 C -0.585 4.585 20 H 0.072 0.928 21 C -0.188 4.188 22 N -0.563 5.563 23 Si 0.793 3.207 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.113 4.113 28 C -0.207 4.207 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.266 0.734 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.053 0.947 44 H 0.030 0.970 45 H 0.078 0.922 46 H 0.169 0.831 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.172 -29.643 -3.892 30.745 hybrid contribution -0.077 1.275 -0.745 1.479 sum 7.095 -28.368 -4.637 29.607 Atomic orbital electron populations 1.21773 0.95636 1.02283 1.01643 1.21660 0.96354 0.93144 1.04121 1.22793 0.95890 0.94488 0.85299 0.90179 1.22389 0.94214 1.03126 1.03926 1.86127 1.83737 1.15878 1.37554 1.19089 0.96023 0.83085 0.94420 1.20422 1.04759 0.92855 0.98350 1.21089 0.98638 0.93608 0.97463 1.17855 1.06067 0.81497 0.95500 1.43016 1.29715 1.05566 1.49800 1.20059 0.81199 0.87985 0.80760 1.90680 1.42589 1.67098 1.38020 1.20201 0.83158 0.88403 0.81204 1.90714 1.43754 1.67204 1.41835 1.48102 1.21322 1.08851 1.52068 1.22121 0.89696 0.95561 0.98350 1.19049 0.96624 0.73705 0.97028 1.21577 1.36587 0.92492 1.07855 0.92829 1.25827 0.96512 0.96545 0.99961 1.70023 1.46527 1.02445 1.37331 0.85451 0.79132 0.77268 0.78874 1.18786 1.20220 1.20073 1.20986 0.99791 0.94134 0.96409 1.21298 1.06635 0.93924 0.98844 0.92626 0.91477 0.93751 0.87847 0.91048 0.88941 0.92232 0.91824 0.84111 0.84905 0.73380 0.91249 0.91011 0.89433 0.94731 0.96986 0.92204 0.83106 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.81 71.98 0.71 -1.02 16 2 C -0.12 -1.06 5.64 30.59 0.17 -0.89 16 3 C 0.07 0.83 2.24 30.59 0.07 0.90 16 4 H 0.08 0.83 6.27 -2.39 -0.01 0.82 16 5 C -0.18 -1.66 9.16 71.98 0.66 -1.00 16 6 O -0.32 -5.79 9.34 -92.97 -0.87 -6.66 16 7 C 0.12 2.41 6.58 22.51 0.15 2.56 16 8 C -0.14 -3.24 9.98 22.35 0.22 -3.02 16 9 C -0.09 -2.26 8.69 22.39 0.19 -2.06 16 10 C 0.08 2.10 6.29 38.19 0.24 2.34 16 11 N -0.63 -17.83 5.32 -304.75 -1.62 -19.45 16 12 C 0.52 17.86 7.54 87.24 0.66 18.51 16 13 O -0.51 -17.60 10.84 -3.37 -0.04 -17.64 16 14 C 0.49 20.92 7.71 87.24 0.67 21.59 16 15 O -0.56 -26.95 16.13 -3.29 -0.05 -27.01 16 16 N -0.57 -25.59 2.86 -852.87 -2.44 -28.02 16 17 C 0.08 3.04 9.25 127.77 1.18 4.22 16 18 C 0.26 13.72 5.10 85.64 0.44 14.16 16 19 C -0.55 -31.22 9.39 25.60 0.24 -30.97 16 20 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 21 C 0.01 0.64 5.46 84.66 0.46 1.10 16 22 N -0.92 -54.75 13.29 21.45 0.28 -54.46 16 23 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 24 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 C -0.09 -1.83 9.96 22.39 0.22 -1.60 16 28 C -0.19 -3.27 8.19 22.35 0.18 -3.08 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.66 7.82 -2.39 -0.02 0.64 16 32 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.06 0.63 6.91 -2.39 -0.02 0.62 16 36 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 38 H 0.13 3.73 6.25 -2.91 -0.02 3.72 16 39 H 0.43 10.94 8.30 -92.71 -0.77 10.17 16 40 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 41 H 0.07 2.54 8.04 -2.39 -0.02 2.52 16 42 H 0.09 3.00 5.91 -2.39 -0.01 2.99 16 43 H 0.03 1.87 8.07 -2.38 -0.02 1.85 16 44 H 0.01 0.72 7.51 -2.39 -0.02 0.70 16 45 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 46 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 47 H 0.16 1.87 5.45 -2.91 -0.02 1.86 16 Total: -1.00 -69.47 389.37 3.98 -65.48 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.22 Total: 19.72 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 6.47 Total: 21.73 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -3.77 Total: -101.94 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -0.96 Total: -51.30 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -69.47 3.98 -65.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283296096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.895 kcal (2) G-P(sol) polarization free energy of solvation -69.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds