Wall clock time and date at job start Tue Mar 31 2020 18:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47303 * 2 1 4 4 H 1.08995 * 109.47019 * 305.00054 * 3 2 1 5 5 C 1.53000 * 109.47258 * 185.00138 * 3 2 1 6 6 O 1.42906 * 109.47049 * 65.00067 * 3 2 1 7 7 C 1.35893 * 116.99800 * 203.12739 * 6 3 2 8 8 C 1.38822 * 120.02096 * 357.63502 * 7 6 3 9 9 C 1.38184 * 120.09439 * 179.69784 * 8 7 6 10 10 C 1.38150 * 120.12985 * 0.25589 * 9 8 7 11 11 C 1.38939 * 120.03773 * 0.03846 * 10 9 8 12 12 N 1.39717 * 120.04818 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99881 * 144.32104 * 12 11 10 14 14 O 1.21376 * 119.99843 * 4.95886 * 13 12 11 15 15 C 1.49355 * 120.00202 * 184.95314 * 13 12 11 16 16 O 1.21354 * 119.99779 * 354.31737 * 15 13 12 17 17 N 1.34769 * 120.00055 * 174.31302 * 15 13 12 18 18 C 1.46499 * 120.00038 * 354.21706 * 17 15 13 19 19 C 1.46501 * 120.00184 * 174.21255 * 17 15 13 20 20 C 1.50699 * 109.47313 * 90.00069 * 19 17 15 21 21 H 1.07999 * 119.99563 * 359.97438 * 20 19 17 22 22 C 1.37878 * 120.00375 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99670 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00106 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47005 * 89.99753 * 24 22 20 26 26 H 1.48503 * 109.47193 * 209.99772 * 24 22 20 27 27 H 1.48498 * 109.47230 * 329.99786 * 24 22 20 28 28 C 1.38577 * 120.01579 * 177.90775 * 7 6 3 29 29 H 1.09005 * 109.47092 * 299.99699 * 1 2 3 30 30 H 1.09001 * 109.47549 * 59.99636 * 1 2 3 31 31 H 1.08998 * 109.47154 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47135 * 239.99752 * 2 1 3 33 33 H 1.09004 * 109.47462 * 119.99843 * 2 1 3 34 34 H 1.09002 * 109.47074 * 60.00214 * 5 3 2 35 35 H 1.08998 * 109.47107 * 180.02562 * 5 3 2 36 36 H 1.08995 * 109.47036 * 299.99905 * 5 3 2 37 37 H 1.07996 * 119.95048 * 359.97220 * 8 7 6 38 38 H 1.08000 * 119.92894 * 180.27032 * 9 8 7 39 39 H 1.07999 * 119.97833 * 180.02562 * 10 9 8 40 40 H 0.97002 * 120.00471 * 324.32186 * 12 11 10 41 41 H 1.09000 * 109.47404 * 85.56234 * 18 17 15 42 42 H 1.09009 * 109.47013 * 205.55858 * 18 17 15 43 43 H 1.08995 * 109.47066 * 325.55581 * 18 17 15 44 44 H 1.08993 * 109.47406 * 210.00307 * 19 17 15 45 45 H 1.09006 * 109.46965 * 330.00165 * 19 17 15 46 46 H 0.97004 * 119.99585 * 180.02562 * 23 22 20 47 47 H 1.07995 * 120.06701 * 359.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 1.6620 2.0814 1.2211 7 6 1.5903 3.4384 1.2109 8 6 1.9256 4.1430 0.0627 9 6 1.8472 5.5225 0.0486 10 6 1.4401 6.2055 1.1784 11 6 1.1091 5.5062 2.3324 12 7 0.6979 6.1967 3.4752 13 6 -0.2466 5.6684 4.2785 14 8 -0.6752 4.5540 4.0598 15 6 -0.7659 6.4540 5.4378 16 8 -0.2662 7.5237 5.7184 17 7 -1.7894 5.9749 6.1721 18 6 -2.4755 4.7479 5.7598 19 6 -2.2159 6.6811 7.3827 20 6 -3.2750 7.6926 7.0275 21 1 -3.5978 7.7991 6.0024 22 6 -3.8312 8.4829 8.0109 23 7 -3.4370 8.3543 9.2590 24 14 -5.1445 9.7362 7.5706 25 1 -6.4846 9.1038 7.6678 26 1 -5.0691 10.8833 8.5107 27 1 -4.9239 10.2178 6.1833 28 6 1.1878 4.1199 2.3484 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8531 0.9570 -1.0572 35 1 3.9282 2.4719 -0.1253 36 1 3.9994 0.9053 0.7160 37 1 2.2438 3.6119 -0.8222 38 1 2.1045 6.0677 -0.8474 39 1 1.3794 7.2837 1.1645 40 1 1.0922 7.0564 3.6906 41 1 -1.9391 3.8830 6.1502 42 1 -3.4929 4.7515 6.1511 43 1 -2.5050 4.6963 4.6715 44 1 -2.6224 5.9651 8.0969 45 1 -1.3606 7.1911 7.8262 46 1 -3.8286 8.9100 9.9510 47 1 0.9304 3.5737 3.2437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283419775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:19 Heat of formation + Delta-G solvation = -73.625411 kcal Electronic energy + Delta-G solvation = -28474.362456 eV Core-core repulsion = 24430.141995 eV Total energy + Delta-G solvation = -4044.220461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98671 -40.15513 -38.54101 -37.45860 -35.53335 -34.61106 -34.04458 -32.58582 -30.80551 -29.94599 -29.50733 -28.04861 -26.23287 -24.73692 -24.33750 -23.27539 -22.68136 -21.89587 -20.52438 -19.55730 -18.66312 -17.26706 -16.74390 -16.58622 -16.40572 -15.99162 -15.59819 -15.45448 -15.40465 -14.91966 -14.43911 -14.34786 -14.11430 -13.78122 -13.66227 -13.52141 -13.38460 -13.09879 -12.67856 -12.41634 -12.38671 -12.12558 -12.04631 -11.99154 -11.92658 -11.51984 -11.42606 -11.27914 -11.04757 -10.98171 -10.88159 -10.71595 -10.59698 -10.25377 -10.20997 -9.69546 -8.86163 -8.52302 -8.48953 -8.17839 -7.81565 -6.10265 -4.15453 1.03597 1.32497 1.92655 2.61093 3.02459 3.28513 3.34812 3.39561 3.56224 3.77412 4.03717 4.29599 4.40851 4.50940 4.61859 4.70764 4.76681 4.86687 4.95888 5.03478 5.11431 5.20100 5.21389 5.24556 5.32298 5.39540 5.50553 5.61702 5.67462 5.73696 5.81177 5.92156 6.00336 6.07668 6.13657 6.14417 6.25064 6.31479 6.43871 6.70058 6.81946 7.18229 7.26245 7.31736 7.35429 7.81414 7.89732 8.12310 8.18322 8.60772 8.88981 9.49440 10.97993 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.002331 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.062096 B =12006.731182 C =12651.257855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.080 3.920 4 H 0.074 0.926 5 C -0.182 4.182 6 O -0.304 6.304 7 C 0.150 3.850 8 C -0.229 4.229 9 C -0.062 4.062 10 C -0.181 4.181 11 C 0.188 3.812 12 N -0.652 5.652 13 C 0.508 3.492 14 O -0.497 6.497 15 C 0.495 3.505 16 O -0.521 6.521 17 N -0.562 5.562 18 C 0.081 3.919 19 C 0.243 3.757 20 C -0.529 4.529 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.901 3.099 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.157 4.157 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.425 0.575 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.041 0.959 45 H 0.047 0.953 46 H 0.265 0.735 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.596 -13.714 -20.977 28.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C 0.024 3.976 4 H 0.092 0.908 5 C -0.239 4.239 6 O -0.218 6.218 7 C 0.104 3.896 8 C -0.249 4.249 9 C -0.081 4.081 10 C -0.201 4.201 11 C 0.093 3.907 12 N -0.299 5.299 13 C 0.291 3.709 14 O -0.371 6.371 15 C 0.275 3.725 16 O -0.399 6.399 17 N -0.293 5.293 18 C -0.063 4.063 19 C 0.124 3.876 20 C -0.567 4.567 21 H 0.078 0.922 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.729 3.271 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.198 1.198 28 C -0.177 4.177 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.263 0.737 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.397 -14.001 -20.527 27.769 hybrid contribution -0.520 1.188 -0.297 1.330 sum 11.878 -12.814 -20.825 27.183 Atomic orbital electron populations 1.21772 0.94942 1.01938 1.02637 1.21623 0.97033 0.93772 1.03121 1.22510 0.94933 0.94033 0.86136 0.90846 1.22396 0.95323 1.03252 1.02935 1.86142 1.83493 1.16370 1.35780 1.18705 0.94682 0.82519 0.93691 1.21232 1.10024 0.95288 0.98309 1.20670 0.96683 0.93310 0.97421 1.20868 1.07057 1.00340 0.91867 1.17413 0.96133 0.90722 0.86384 1.43266 1.39176 1.24458 1.23033 1.21018 0.79183 0.86884 0.83783 1.90706 1.56413 1.18896 1.71055 1.19514 0.82980 0.86178 0.83858 1.90747 1.59136 1.20725 1.69270 1.48121 1.29498 1.25435 1.26277 1.22003 0.97318 0.85533 1.01412 1.19522 0.96307 0.92031 0.79722 1.21369 1.21006 1.19734 0.94620 0.92245 1.24935 0.97135 0.97161 0.94811 1.69930 1.42795 1.40232 1.00259 0.86445 0.81470 0.80810 0.78410 1.20548 1.21022 1.19841 1.20462 1.05672 0.92543 0.99062 0.91620 0.92864 0.92431 0.90164 0.90715 0.91090 0.91650 0.91370 0.85427 0.85433 0.85296 0.73690 0.92945 0.91047 0.90364 0.94078 0.93511 0.92577 0.83445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.81 37.15 0.36 -0.83 16 2 C -0.12 -0.81 5.64 -26.73 -0.15 -0.96 16 3 C 0.08 0.64 2.24 -26.73 -0.06 0.58 16 4 H 0.07 0.54 6.27 -51.93 -0.33 0.21 16 5 C -0.18 -1.20 9.16 37.16 0.34 -0.86 16 6 O -0.30 -3.54 9.34 -19.40 -0.18 -3.72 16 7 C 0.15 1.84 6.57 -39.24 -0.26 1.59 16 8 C -0.23 -2.29 8.20 -39.38 -0.32 -2.62 16 9 C -0.06 -0.59 10.03 -39.63 -0.40 -0.99 16 10 C -0.18 -2.00 9.96 -39.35 -0.39 -2.39 16 11 C 0.19 2.55 6.28 -83.77 -0.53 2.02 16 12 N -0.65 -9.52 5.32 -10.31 -0.05 -9.57 16 13 C 0.51 8.93 7.54 -11.63 -0.09 8.84 16 14 O -0.50 -8.96 10.84 5.47 0.06 -8.90 16 15 C 0.49 10.45 7.71 -11.63 -0.09 10.36 16 16 O -0.52 -12.30 16.13 5.49 0.09 -12.22 16 17 N -0.56 -12.38 2.86 -183.51 -0.52 -12.90 16 18 C 0.08 1.47 9.25 59.85 0.55 2.02 16 19 C 0.24 6.29 5.10 -5.19 -0.03 6.27 16 20 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 21 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 24 Si 0.90 21.68 29.54 -169.99 -5.02 16.65 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 27 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 28 C -0.16 -2.22 8.63 -39.23 -0.34 -2.56 16 29 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.46 6.92 -51.93 -0.36 0.10 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.13 0.99 5.46 -52.49 -0.29 0.70 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.42 5.57 8.30 -40.82 -0.34 5.23 16 41 H 0.05 0.88 8.12 -51.93 -0.42 0.45 16 42 H 0.07 1.27 8.04 -51.92 -0.42 0.86 16 43 H 0.08 1.38 5.91 -51.93 -0.31 1.08 16 44 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 45 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.15 2.35 6.25 -52.49 -0.33 2.02 16 LS Contribution 389.36 15.07 5.87 5.87 Total: -1.00 -32.29 389.36 -7.77 -40.05 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.93 Total: 3.19 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -1.81 Total: 6.95 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.16 Total: -47.88 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.03 Total: -24.84 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.29 -7.77 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283419775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.571 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds