Wall clock time and date at job start Tue Mar 31 2020 18:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47303 * 2 1 4 4 H 1.08995 * 109.47019 * 305.00054 * 3 2 1 5 5 C 1.53000 * 109.47258 * 185.00138 * 3 2 1 6 6 O 1.42906 * 109.47049 * 65.00067 * 3 2 1 7 7 C 1.35893 * 116.99800 * 203.12739 * 6 3 2 8 8 C 1.38822 * 120.02096 * 357.63502 * 7 6 3 9 9 C 1.38184 * 120.09439 * 179.69784 * 8 7 6 10 10 C 1.38150 * 120.12985 * 0.25589 * 9 8 7 11 11 C 1.38939 * 120.03773 * 0.03846 * 10 9 8 12 12 N 1.39717 * 120.04818 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99881 * 144.32104 * 12 11 10 14 14 O 1.21376 * 119.99843 * 4.95886 * 13 12 11 15 15 C 1.49355 * 120.00202 * 184.95314 * 13 12 11 16 16 O 1.21354 * 119.99779 * 354.31737 * 15 13 12 17 17 N 1.34769 * 120.00055 * 174.31302 * 15 13 12 18 18 C 1.46499 * 120.00038 * 354.21706 * 17 15 13 19 19 C 1.46501 * 120.00184 * 174.21255 * 17 15 13 20 20 C 1.50699 * 109.47313 * 90.00069 * 19 17 15 21 21 H 1.07999 * 119.99563 * 359.97438 * 20 19 17 22 22 C 1.37878 * 120.00375 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99670 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00106 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47005 * 89.99753 * 24 22 20 26 26 H 1.48503 * 109.47193 * 209.99772 * 24 22 20 27 27 H 1.48498 * 109.47230 * 329.99786 * 24 22 20 28 28 C 1.38577 * 120.01579 * 177.90775 * 7 6 3 29 29 H 1.09005 * 109.47092 * 299.99699 * 1 2 3 30 30 H 1.09001 * 109.47549 * 59.99636 * 1 2 3 31 31 H 1.08998 * 109.47154 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47135 * 239.99752 * 2 1 3 33 33 H 1.09004 * 109.47462 * 119.99843 * 2 1 3 34 34 H 1.09002 * 109.47074 * 60.00214 * 5 3 2 35 35 H 1.08998 * 109.47107 * 180.02562 * 5 3 2 36 36 H 1.08995 * 109.47036 * 299.99905 * 5 3 2 37 37 H 1.07996 * 119.95048 * 359.97220 * 8 7 6 38 38 H 1.08000 * 119.92894 * 180.27032 * 9 8 7 39 39 H 1.07999 * 119.97833 * 180.02562 * 10 9 8 40 40 H 0.97002 * 120.00471 * 324.32186 * 12 11 10 41 41 H 1.09000 * 109.47404 * 85.56234 * 18 17 15 42 42 H 1.09009 * 109.47013 * 205.55858 * 18 17 15 43 43 H 1.08995 * 109.47066 * 325.55581 * 18 17 15 44 44 H 1.08993 * 109.47406 * 210.00307 * 19 17 15 45 45 H 1.09006 * 109.46965 * 330.00165 * 19 17 15 46 46 H 0.97004 * 119.99585 * 180.02562 * 23 22 20 47 47 H 1.07995 * 120.06701 * 359.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 1.6620 2.0814 1.2211 7 6 1.5903 3.4384 1.2109 8 6 1.9256 4.1430 0.0627 9 6 1.8472 5.5225 0.0486 10 6 1.4401 6.2055 1.1784 11 6 1.1091 5.5062 2.3324 12 7 0.6979 6.1967 3.4752 13 6 -0.2466 5.6684 4.2785 14 8 -0.6752 4.5540 4.0598 15 6 -0.7659 6.4540 5.4378 16 8 -0.2662 7.5237 5.7184 17 7 -1.7894 5.9749 6.1721 18 6 -2.4755 4.7479 5.7598 19 6 -2.2159 6.6811 7.3827 20 6 -3.2750 7.6926 7.0275 21 1 -3.5978 7.7991 6.0024 22 6 -3.8312 8.4829 8.0109 23 7 -3.4370 8.3543 9.2590 24 14 -5.1445 9.7362 7.5706 25 1 -6.4846 9.1038 7.6678 26 1 -5.0691 10.8833 8.5107 27 1 -4.9239 10.2178 6.1833 28 6 1.1878 4.1199 2.3484 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8531 0.9570 -1.0572 35 1 3.9282 2.4719 -0.1253 36 1 3.9994 0.9053 0.7160 37 1 2.2438 3.6119 -0.8222 38 1 2.1045 6.0677 -0.8474 39 1 1.3794 7.2837 1.1645 40 1 1.0922 7.0564 3.6906 41 1 -1.9391 3.8830 6.1502 42 1 -3.4929 4.7515 6.1511 43 1 -2.5050 4.6963 4.6715 44 1 -2.6224 5.9651 8.0969 45 1 -1.3606 7.1911 7.8262 46 1 -3.8286 8.9100 9.9510 47 1 0.9304 3.5737 3.2437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283419775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:18 Heat of formation + Delta-G solvation = -93.658026 kcal Electronic energy + Delta-G solvation = -28475.231135 eV Core-core repulsion = 24430.141995 eV Total energy + Delta-G solvation = -4045.089140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.24106 -41.18709 -39.91588 -38.62675 -37.11023 -35.75948 -34.96644 -34.64904 -31.59905 -30.65812 -30.51667 -29.99344 -27.80092 -26.41173 -24.98092 -24.66237 -23.55594 -23.12789 -21.41068 -20.97254 -19.62885 -18.80503 -18.69586 -17.98548 -17.35819 -17.07692 -16.98090 -16.88821 -16.46165 -16.23596 -16.02734 -15.39931 -15.04234 -14.93207 -14.61867 -14.53434 -14.32049 -14.21088 -14.18874 -13.89999 -13.61784 -13.39530 -13.31572 -13.05162 -12.91518 -12.69884 -12.67729 -12.63431 -12.40250 -12.25954 -12.13338 -12.02236 -11.77904 -11.71313 -11.45642 -11.24643 -10.66101 -10.42215 -9.69208 -9.49630 -9.06875 -8.25743 -6.40322 -0.06823 0.44932 0.58294 1.25059 1.38653 1.40493 1.51655 2.06122 2.21402 2.36966 2.60692 2.77385 3.04912 3.26131 3.72380 3.89338 3.97904 4.02089 4.15852 4.21517 4.28538 4.36271 4.41816 4.50445 4.55687 4.64219 4.66619 4.68256 4.82686 4.83936 4.94382 4.98903 5.06655 5.11184 5.17190 5.20763 5.23124 5.25412 5.31920 5.39718 5.41569 5.46278 5.67096 5.77959 5.94587 5.97555 6.34551 6.52283 6.61929 6.68242 6.93862 7.29867 8.82078 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.002331 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.062096 B =12006.731182 C =12651.257855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C 0.071 3.929 4 H 0.085 0.915 5 C -0.178 4.178 6 O -0.326 6.326 7 C 0.141 3.859 8 C -0.219 4.219 9 C -0.053 4.053 10 C -0.178 4.178 11 C 0.165 3.835 12 N -0.637 5.637 13 C 0.517 3.483 14 O -0.504 6.504 15 C 0.490 3.510 16 O -0.553 6.553 17 N -0.572 5.572 18 C 0.085 3.915 19 C 0.256 3.744 20 C -0.546 4.546 21 H 0.053 0.947 22 C 0.011 3.989 23 N -0.925 5.925 24 Si 0.970 3.030 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.272 1.272 28 C -0.182 4.182 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.156 0.844 38 H 0.167 0.833 39 H 0.149 0.851 40 H 0.431 0.569 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.035 0.965 45 H 0.013 0.987 46 H 0.269 0.731 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.980 -13.797 -24.466 30.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C 0.016 3.984 4 H 0.103 0.897 5 C -0.235 4.235 6 O -0.240 6.240 7 C 0.095 3.905 8 C -0.238 4.238 9 C -0.072 4.072 10 C -0.199 4.199 11 C 0.071 3.929 12 N -0.284 5.284 13 C 0.300 3.700 14 O -0.379 6.379 15 C 0.271 3.729 16 O -0.432 6.432 17 N -0.303 5.303 18 C -0.057 4.057 19 C 0.136 3.864 20 C -0.584 4.584 21 H 0.072 0.928 22 C -0.188 4.188 23 N -0.564 5.564 24 Si 0.794 3.206 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.197 1.197 28 C -0.203 4.203 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.173 0.827 38 H 0.184 0.816 39 H 0.166 0.834 40 H 0.270 0.730 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.053 0.947 45 H 0.031 0.969 46 H 0.078 0.922 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.804 -14.118 -24.056 30.691 hybrid contribution -0.538 1.120 0.700 1.426 sum 12.266 -12.998 -23.356 29.409 Atomic orbital electron populations 1.21768 0.95780 1.02256 1.01509 1.21675 0.96260 0.93354 1.04076 1.22830 0.96070 0.94358 0.85152 0.89705 1.22379 0.93979 1.03239 1.03891 1.86132 1.83668 1.16238 1.38003 1.18802 0.94792 0.83052 0.93861 1.21577 1.08285 0.95723 0.98166 1.21137 0.94779 0.93224 0.98012 1.21154 1.06094 1.01396 0.91207 1.17602 0.98019 0.90653 0.86639 1.43081 1.37937 1.24492 1.22928 1.20168 0.80133 0.86417 0.83318 1.90709 1.57170 1.18843 1.71173 1.20127 0.82260 0.86019 0.84451 1.90711 1.59935 1.22241 1.70356 1.48105 1.30280 1.26329 1.25553 1.22112 0.97305 0.84414 1.01886 1.19065 0.94472 0.91668 0.81190 1.21596 1.21724 1.20671 0.94459 0.92838 1.25831 0.99312 0.99045 0.94636 1.70038 1.43951 1.41173 1.01226 0.85379 0.78965 0.78217 0.78039 1.19012 1.20350 1.19726 1.20370 1.07667 0.93047 0.99192 0.94463 0.92196 0.91450 0.87339 0.91544 0.88533 0.91965 0.92290 0.82651 0.81584 0.83362 0.72985 0.91422 0.90791 0.89575 0.94704 0.96939 0.92181 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.81 71.98 0.71 -1.54 16 2 C -0.12 -1.40 5.64 30.59 0.17 -1.22 16 3 C 0.07 1.01 2.24 30.59 0.07 1.07 16 4 H 0.09 0.98 6.27 -2.39 -0.01 0.97 16 5 C -0.18 -1.90 9.16 71.98 0.66 -1.24 16 6 O -0.33 -7.49 9.34 -92.35 -0.86 -8.35 16 7 C 0.14 3.36 6.57 22.49 0.15 3.50 16 8 C -0.22 -3.73 8.20 22.40 0.18 -3.54 16 9 C -0.05 -0.82 10.03 22.24 0.22 -0.59 16 10 C -0.18 -3.52 9.96 22.42 0.22 -3.29 16 11 C 0.16 4.38 6.28 38.20 0.24 4.62 16 12 N -0.64 -18.80 5.32 -304.88 -1.62 -20.43 16 13 C 0.52 18.67 7.54 87.24 0.66 19.33 16 14 O -0.50 -18.66 10.84 -3.33 -0.04 -18.70 16 15 C 0.49 21.45 7.71 87.24 0.67 22.12 16 16 O -0.55 -27.18 16.13 -3.26 -0.05 -27.23 16 17 N -0.57 -26.06 2.86 -852.85 -2.44 -28.49 16 18 C 0.08 3.14 9.25 127.77 1.18 4.32 16 19 C 0.26 13.86 5.10 85.63 0.44 14.30 16 20 C -0.55 -31.41 9.39 25.60 0.24 -31.16 16 21 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 22 C 0.01 0.65 5.46 84.65 0.46 1.11 16 23 N -0.92 -55.04 13.29 21.45 0.28 -54.76 16 24 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 28 C -0.18 -5.25 8.63 22.50 0.19 -5.06 16 29 H 0.04 0.74 7.82 -2.38 -0.02 0.72 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.71 6.92 -2.39 -0.02 0.69 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.16 1.75 5.46 -2.91 -0.02 1.73 16 38 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.43 11.41 8.30 -92.71 -0.77 10.64 16 41 H 0.07 2.29 8.12 -2.39 -0.02 2.27 16 42 H 0.07 2.67 8.04 -2.38 -0.02 2.65 16 43 H 0.09 3.07 5.91 -2.39 -0.01 3.06 16 44 H 0.04 1.90 8.07 -2.39 -0.02 1.88 16 45 H 0.01 0.75 7.51 -2.38 -0.02 0.74 16 46 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 47 H 0.12 4.06 6.25 -2.91 -0.02 4.04 16 Total: -1.00 -72.26 389.36 3.99 -68.27 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.22 Total: 20.40 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 6.47 Total: 22.72 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -3.77 Total: -103.68 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -0.95 Total: -54.28 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -72.26 3.99 -68.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283419775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.387 kcal (2) G-P(sol) polarization free energy of solvation -72.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds