Wall clock time and date at job start Tue Mar 31 2020 18:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99776 * 2 1 4 4 N 1.46502 * 109.46923 * 125.00164 * 3 2 1 5 5 C 1.46500 * 119.99820 * 89.89304 * 4 3 2 6 6 C 1.53003 * 109.47078 * 93.96815 * 5 4 3 7 7 C 1.50693 * 109.47090 * 179.97438 * 6 5 4 8 8 C 1.34514 * 125.79354 * 89.99789 * 7 6 5 9 9 C 1.41384 * 106.84445 * 180.02562 * 8 7 6 10 10 C 1.34512 * 106.84002 * 359.97438 * 9 8 7 11 11 O 1.34309 * 108.42347 * 0.02562 * 10 9 8 12 12 C 1.34777 * 119.99946 * 269.89396 * 4 3 2 13 13 O 1.21351 * 120.00153 * 5.43794 * 12 4 3 14 14 C 1.49445 * 119.99974 * 185.43921 * 12 4 3 15 15 O 1.21351 * 120.00298 * 5.43213 * 14 12 4 16 16 N 1.34776 * 120.00149 * 185.42814 * 14 12 4 17 17 C 1.46503 * 120.00109 * 180.02562 * 16 14 12 18 18 C 1.53008 * 109.47055 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.46751 * 179.97438 * 18 17 16 20 20 C 1.50705 * 109.46960 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99718 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00110 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99816 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00187 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.46966 * 89.99537 * 24 22 20 26 26 H 1.48500 * 109.47104 * 209.99723 * 24 22 20 27 27 H 1.48493 * 109.46902 * 329.99780 * 24 22 20 28 28 H 1.07998 * 120.00141 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00081 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00141 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47188 * 4.99974 * 3 2 1 32 32 H 1.09000 * 109.47229 * 245.00300 * 3 2 1 33 33 H 1.08992 * 109.47347 * 333.96112 * 5 4 3 34 34 H 1.09003 * 109.47138 * 213.96326 * 5 4 3 35 35 H 1.09004 * 109.47178 * 59.99491 * 6 5 4 36 36 H 1.09003 * 109.46736 * 299.99757 * 6 5 4 37 37 H 1.07998 * 126.57862 * 359.97438 * 8 7 6 38 38 H 1.07997 * 126.58262 * 179.97438 * 9 8 7 39 39 H 1.08005 * 125.79100 * 180.25941 * 10 9 8 40 40 H 0.96999 * 120.00022 * 0.02562 * 16 14 12 41 41 H 1.09001 * 109.47182 * 300.00171 * 17 16 14 42 42 H 1.09000 * 109.46855 * 60.00188 * 17 16 14 43 43 H 1.08996 * 109.46929 * 299.99819 * 18 17 16 44 44 H 1.09002 * 109.46752 * 59.99979 * 18 17 16 45 45 H 1.09001 * 109.47508 * 300.00210 * 19 18 17 46 46 H 1.09002 * 109.47335 * 60.00550 * 19 18 17 47 47 H 0.97007 * 119.99918 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3582 0.8235 0.9700 6 6 5.2947 1.9801 0.6147 7 6 6.6983 1.4573 0.4493 8 6 7.2418 1.0118 -0.6977 9 6 8.5668 0.6199 -0.3980 10 6 8.7539 0.8499 0.9140 11 8 7.6188 1.3569 1.4222 12 6 2.5943 1.8242 2.3208 13 8 1.4377 2.1536 2.4836 14 6 3.5756 1.9644 3.4391 15 8 4.7507 1.7288 3.2484 16 7 3.1557 2.3526 4.6595 17 6 4.1179 2.4906 5.7557 18 6 3.3869 2.9406 7.0223 19 6 4.3916 3.0841 8.1671 20 6 3.6718 3.5279 9.4145 21 1 2.6044 3.6909 9.3929 22 6 4.3757 3.7249 10.5835 23 7 3.7474 4.1117 11.6722 24 14 6.2218 3.4423 10.6211 25 1 6.9230 4.7055 10.2778 26 1 6.6280 3.0044 11.9807 27 1 6.5820 2.3925 9.6346 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 4.3775 0.0819 0.1715 34 1 4.6869 0.3629 1.9017 35 1 5.2753 2.7218 1.4133 36 1 4.9659 2.4407 -0.3169 37 1 6.7585 0.9621 -1.6622 38 1 9.2899 0.2138 -1.0898 39 1 9.6640 0.6625 1.4646 40 1 2.2164 2.5406 4.8121 41 1 4.6024 1.5311 5.9368 42 1 4.8700 3.2326 5.4876 43 1 2.9028 3.9002 6.8408 44 1 2.6345 2.1989 7.2904 45 1 4.8755 2.1243 8.3484 46 1 5.1443 3.8256 7.8992 47 1 4.2428 4.2507 12.4946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286681967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:01 Heat of formation + Delta-G solvation = -31.501021 kcal Electronic energy + Delta-G solvation = -28209.344955 eV Core-core repulsion = 24166.951145 eV Total energy + Delta-G solvation = -4042.393810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.67862 -40.97682 -38.70942 -37.07907 -35.62482 -34.42481 -33.34855 -33.12668 -32.11381 -31.48270 -28.25055 -27.95836 -26.92095 -24.53386 -23.66586 -22.08535 -21.87414 -20.79695 -20.60146 -20.21526 -19.49658 -18.00382 -17.48760 -17.27713 -16.73540 -16.26952 -16.02280 -15.85344 -15.30442 -15.17723 -14.82513 -14.71839 -14.40847 -14.11521 -13.96688 -13.52840 -13.38009 -12.97235 -12.94064 -12.81865 -12.73022 -12.63377 -12.14722 -12.11800 -11.97469 -11.68095 -11.38580 -11.24453 -11.10693 -10.90247 -10.17031 -10.07876 -9.98263 -9.90137 -9.76664 -9.34632 -9.33071 -9.23973 -9.00926 -8.56588 -8.55538 -6.06973 -4.05940 1.33624 1.56881 1.74919 2.37000 2.45201 2.88490 3.12885 3.30204 3.37774 3.41312 3.41652 4.29206 4.43266 4.52189 4.56716 4.62795 4.72919 4.83234 4.88632 4.93265 4.96369 5.18482 5.26802 5.31731 5.39660 5.43921 5.55381 5.57051 5.64003 5.69300 5.74528 5.93317 5.99284 6.03294 6.20557 6.24015 6.33366 6.35065 6.38748 6.55632 6.73653 6.75940 7.04514 7.19335 7.23707 7.33180 7.62262 7.74470 7.98897 8.49465 8.97164 9.54909 11.06273 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009542 B = 0.002750 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.801542 B =10178.439536 C =12885.697344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.182 4.182 3 C 0.140 3.860 4 N -0.586 5.586 5 C 0.111 3.889 6 C -0.053 4.053 7 C 0.007 3.993 8 C -0.219 4.219 9 C -0.219 4.219 10 C -0.042 4.042 11 O -0.162 6.162 12 C 0.508 3.492 13 O -0.513 6.513 14 C 0.496 3.504 15 O -0.513 6.513 16 N -0.691 5.691 17 C 0.113 3.887 18 C -0.115 4.115 19 C -0.010 4.010 20 C -0.523 4.523 21 H 0.072 0.928 22 C 0.067 3.933 23 N -0.902 5.902 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.264 1.264 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.200 0.800 40 H 0.411 0.589 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.019 0.981 46 H 0.015 0.985 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 -8.673 -30.212 31.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.201 4.201 3 C 0.019 3.981 4 N -0.319 5.319 5 C -0.011 4.011 6 C -0.091 4.091 7 C -0.045 4.045 8 C -0.238 4.238 9 C -0.238 4.238 10 C -0.110 4.110 11 O -0.057 6.057 12 C 0.291 3.709 13 O -0.388 6.388 14 C 0.276 3.724 15 O -0.390 6.390 16 N -0.343 5.343 17 C -0.009 4.009 18 C -0.153 4.153 19 C -0.048 4.048 20 C -0.561 4.561 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.541 5.541 24 Si 0.707 3.293 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.189 1.189 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.217 0.783 40 H 0.247 0.753 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.037 0.963 46 H 0.033 0.967 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.621 -8.519 -29.737 31.043 hybrid contribution 0.771 -0.184 -0.007 0.792 sum 3.391 -8.703 -29.744 31.176 Atomic orbital electron populations 1.23923 0.95830 1.02236 0.98016 1.23190 0.96380 0.98484 1.02072 1.20703 0.92461 0.96672 0.88291 1.47808 1.13328 1.60591 1.10143 1.21950 0.79050 0.95389 1.04718 1.20489 0.85845 0.99045 1.03741 1.22153 0.92018 1.03882 0.86427 1.21566 0.95780 1.07468 0.99017 1.21793 0.97880 1.07846 0.96290 1.24082 0.89900 1.02452 0.94612 1.84150 1.20116 1.63735 1.37651 1.20421 0.88256 0.78407 0.83853 1.90762 1.18389 1.48038 1.81582 1.20005 0.88545 0.79660 0.84180 1.90762 1.17245 1.48622 1.82372 1.46031 1.13560 1.65530 1.09142 1.21833 0.91584 1.01965 0.85548 1.21740 0.99640 1.01106 0.92830 1.19499 0.94861 0.96820 0.93612 1.21092 0.96418 1.45765 0.92785 0.90945 1.25028 0.98442 0.94487 0.95516 1.69914 1.36189 1.47089 1.00933 0.86775 0.85984 0.79154 0.77378 1.20240 1.21374 1.18898 0.88141 0.88253 0.87188 0.89091 0.89151 0.90241 0.87298 0.88618 0.89446 0.83735 0.83708 0.78317 0.75260 0.91124 0.91117 0.91845 0.91850 0.96266 0.96695 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 14.32 29.01 0.42 -0.79 16 2 C -0.18 -1.38 9.85 -36.03 -0.35 -1.74 16 3 C 0.14 1.06 5.79 -5.19 -0.03 1.03 16 4 N -0.59 -5.65 2.46 -175.57 -0.43 -6.08 16 5 C 0.11 1.00 4.94 -4.04 -0.02 0.98 16 6 C -0.05 -0.49 5.50 -27.88 -0.15 -0.65 16 7 C 0.01 0.07 6.57 -35.63 -0.23 -0.16 16 8 C -0.22 -2.03 10.81 -39.70 -0.43 -2.45 16 9 C -0.22 -1.96 10.91 -39.70 -0.43 -2.40 16 10 C -0.04 -0.41 12.09 29.42 0.36 -0.05 16 11 O -0.16 -2.02 10.65 5.67 0.06 -1.96 16 12 C 0.51 6.35 7.70 -11.59 -0.09 6.26 16 13 O -0.51 -7.35 16.12 5.50 0.09 -7.26 16 14 C 0.50 6.82 7.65 -11.59 -0.09 6.73 16 15 O -0.51 -7.63 11.41 5.50 0.06 -7.56 16 16 N -0.69 -9.68 5.55 -60.72 -0.34 -10.01 16 17 C 0.11 1.78 5.67 -4.04 -0.02 1.76 16 18 C -0.12 -2.12 5.27 -26.73 -0.14 -2.26 16 19 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 20 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 21 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 22 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 23 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 24 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 28 H 0.10 0.75 7.84 -52.49 -0.41 0.33 16 29 H 0.10 0.63 8.06 -52.48 -0.42 0.21 16 30 H 0.11 0.77 8.06 -52.49 -0.42 0.34 16 31 H 0.09 0.76 7.15 -51.93 -0.37 0.38 16 32 H 0.09 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.08 0.54 8.04 -51.93 -0.42 0.13 16 34 H 0.11 1.23 5.84 -51.93 -0.30 0.93 16 35 H 0.10 1.11 6.46 -51.93 -0.34 0.77 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.20 1.25 8.06 -52.48 -0.42 0.83 16 40 H 0.41 5.39 7.96 -40.82 -0.32 5.06 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 46 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 398.05 15.07 6.00 6.00 Total: -1.00 -33.28 398.05 -7.39 -40.67 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.16 Total: 3.51 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.77 Total: -7.25 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.00 Total: -43.04 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: 0.21 Total: -16.79 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.28 -7.39 -40.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286681967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.165 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds