Wall clock time and date at job start Tue Mar 31 2020 18:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99776 * 2 1 4 4 N 1.46502 * 109.46923 * 125.00164 * 3 2 1 5 5 C 1.46500 * 119.99820 * 89.89304 * 4 3 2 6 6 C 1.53003 * 109.47078 * 93.96815 * 5 4 3 7 7 C 1.50693 * 109.47090 * 179.97438 * 6 5 4 8 8 C 1.34514 * 125.79354 * 89.99789 * 7 6 5 9 9 C 1.41384 * 106.84445 * 180.02562 * 8 7 6 10 10 C 1.34512 * 106.84002 * 359.97438 * 9 8 7 11 11 O 1.34309 * 108.42347 * 0.02562 * 10 9 8 12 12 C 1.34777 * 119.99946 * 269.89396 * 4 3 2 13 13 O 1.21351 * 120.00153 * 5.43794 * 12 4 3 14 14 C 1.49445 * 119.99974 * 185.43921 * 12 4 3 15 15 O 1.21351 * 120.00298 * 5.43213 * 14 12 4 16 16 N 1.34776 * 120.00149 * 185.42814 * 14 12 4 17 17 C 1.46503 * 120.00109 * 180.02562 * 16 14 12 18 18 C 1.53008 * 109.47055 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.46751 * 179.97438 * 18 17 16 20 20 C 1.50705 * 109.46960 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99718 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00110 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99816 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00187 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.46966 * 89.99537 * 24 22 20 26 26 H 1.48500 * 109.47104 * 209.99723 * 24 22 20 27 27 H 1.48493 * 109.46902 * 329.99780 * 24 22 20 28 28 H 1.07998 * 120.00141 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00081 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00141 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47188 * 4.99974 * 3 2 1 32 32 H 1.09000 * 109.47229 * 245.00300 * 3 2 1 33 33 H 1.08992 * 109.47347 * 333.96112 * 5 4 3 34 34 H 1.09003 * 109.47138 * 213.96326 * 5 4 3 35 35 H 1.09004 * 109.47178 * 59.99491 * 6 5 4 36 36 H 1.09003 * 109.46736 * 299.99757 * 6 5 4 37 37 H 1.07998 * 126.57862 * 359.97438 * 8 7 6 38 38 H 1.07997 * 126.58262 * 179.97438 * 9 8 7 39 39 H 1.08005 * 125.79100 * 180.25941 * 10 9 8 40 40 H 0.96999 * 120.00022 * 0.02562 * 16 14 12 41 41 H 1.09001 * 109.47182 * 300.00171 * 17 16 14 42 42 H 1.09000 * 109.46855 * 60.00188 * 17 16 14 43 43 H 1.08996 * 109.46929 * 299.99819 * 18 17 16 44 44 H 1.09002 * 109.46752 * 59.99979 * 18 17 16 45 45 H 1.09001 * 109.47508 * 300.00210 * 19 18 17 46 46 H 1.09002 * 109.47335 * 60.00550 * 19 18 17 47 47 H 0.97007 * 119.99918 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3582 0.8235 0.9700 6 6 5.2947 1.9801 0.6147 7 6 6.6983 1.4573 0.4493 8 6 7.2418 1.0118 -0.6977 9 6 8.5668 0.6199 -0.3980 10 6 8.7539 0.8499 0.9140 11 8 7.6188 1.3569 1.4222 12 6 2.5943 1.8242 2.3208 13 8 1.4377 2.1536 2.4836 14 6 3.5756 1.9644 3.4391 15 8 4.7507 1.7288 3.2484 16 7 3.1557 2.3526 4.6595 17 6 4.1179 2.4906 5.7557 18 6 3.3869 2.9406 7.0223 19 6 4.3916 3.0841 8.1671 20 6 3.6718 3.5279 9.4145 21 1 2.6044 3.6909 9.3929 22 6 4.3757 3.7249 10.5835 23 7 3.7474 4.1117 11.6722 24 14 6.2218 3.4423 10.6211 25 1 6.9230 4.7055 10.2778 26 1 6.6280 3.0044 11.9807 27 1 6.5820 2.3925 9.6346 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 4.3775 0.0819 0.1715 34 1 4.6869 0.3629 1.9017 35 1 5.2753 2.7218 1.4133 36 1 4.9659 2.4407 -0.3169 37 1 6.7585 0.9621 -1.6622 38 1 9.2899 0.2138 -1.0898 39 1 9.6640 0.6625 1.4646 40 1 2.2164 2.5406 4.8121 41 1 4.6024 1.5311 5.9368 42 1 4.8700 3.2326 5.4876 43 1 2.9028 3.9002 6.8408 44 1 2.6345 2.1989 7.2904 45 1 4.8755 2.1243 8.3484 46 1 5.1443 3.8256 7.8992 47 1 4.2428 4.2507 12.4946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286681967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:00 Heat of formation + Delta-G solvation = -52.515435 kcal Electronic energy + Delta-G solvation = -28210.256208 eV Core-core repulsion = 24166.951145 eV Total energy + Delta-G solvation = -4043.305063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.40459 -41.96271 -39.74985 -37.99636 -36.93494 -35.25024 -34.98056 -33.87130 -33.28990 -32.82367 -29.44263 -28.91133 -27.97604 -25.60587 -24.78536 -23.33266 -22.57764 -22.28645 -21.29363 -21.14337 -20.39931 -19.10162 -18.75465 -18.21924 -18.15230 -17.22119 -16.98557 -16.83170 -16.39661 -16.28469 -15.96271 -15.66386 -15.46992 -15.28987 -14.98258 -14.77997 -14.43949 -14.25818 -13.82198 -13.66510 -13.64325 -13.61771 -13.47687 -13.30553 -12.85174 -12.75602 -12.71873 -12.34493 -12.23397 -12.00526 -11.90340 -11.76020 -11.59354 -11.34196 -10.77931 -10.76205 -10.67497 -10.30320 -10.22049 -10.03916 -9.26268 -8.29126 -6.33553 0.31493 0.84483 1.04185 1.37690 1.39153 1.51069 1.57436 1.77185 2.08877 2.20343 2.36800 2.52240 3.06620 3.27081 3.88863 3.93509 3.95503 4.02179 4.12640 4.16903 4.19950 4.25499 4.31316 4.40442 4.47430 4.54544 4.64640 4.74865 4.80139 4.85894 4.95587 5.00605 5.01138 5.02400 5.09815 5.24888 5.30172 5.34827 5.45866 5.54460 5.64289 5.68063 5.70002 5.73048 5.94031 6.19074 6.27482 6.34338 6.63690 6.74750 6.92201 7.31223 8.87526 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009542 B = 0.002750 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.801542 B =10178.439536 C =12885.697344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.187 4.187 3 C 0.136 3.864 4 N -0.572 5.572 5 C 0.115 3.885 6 C -0.046 4.046 7 C -0.018 4.018 8 C -0.215 4.215 9 C -0.225 4.225 10 C -0.057 4.057 11 O -0.196 6.196 12 C 0.508 3.492 13 O -0.537 6.537 14 C 0.495 3.505 15 O -0.523 6.523 16 N -0.691 5.691 17 C 0.128 3.872 18 C -0.104 4.104 19 C -0.010 4.010 20 C -0.533 4.533 21 H 0.034 0.966 22 C 0.003 3.997 23 N -0.952 5.952 24 Si 0.950 3.050 25 H -0.267 1.267 26 H -0.285 1.285 27 H -0.244 1.244 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.223 0.777 40 H 0.416 0.584 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.024 0.976 46 H 0.023 0.977 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 -9.839 -33.183 34.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.206 4.206 3 C 0.016 3.984 4 N -0.304 5.304 5 C -0.007 4.007 6 C -0.084 4.084 7 C -0.068 4.068 8 C -0.234 4.234 9 C -0.243 4.243 10 C -0.125 4.125 11 O -0.092 6.092 12 C 0.291 3.709 13 O -0.414 6.414 14 C 0.276 3.724 15 O -0.401 6.401 16 N -0.344 5.344 17 C 0.005 3.995 18 C -0.142 4.142 19 C -0.048 4.048 20 C -0.571 4.571 21 H 0.053 0.947 22 C -0.194 4.194 23 N -0.593 5.593 24 Si 0.773 3.227 25 H -0.192 1.192 26 H -0.211 1.211 27 H -0.168 1.168 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.187 0.813 38 H 0.185 0.815 39 H 0.240 0.760 40 H 0.252 0.748 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.043 0.957 46 H 0.041 0.959 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.285 -9.702 -32.764 34.438 hybrid contribution 0.199 0.164 0.858 0.897 sum 4.484 -9.537 -31.906 33.601 Atomic orbital electron populations 1.24058 0.96087 1.02609 0.97857 1.23276 0.96457 0.98731 1.02169 1.20946 0.92439 0.96488 0.88524 1.47872 1.13929 1.58949 1.09658 1.21940 0.78362 0.95811 1.04548 1.20451 0.85662 0.98342 1.03968 1.22456 0.92409 1.05217 0.86762 1.21920 0.95837 1.06137 0.99460 1.22170 0.98339 1.07416 0.96421 1.24711 0.90019 1.02225 0.95498 1.84122 1.21313 1.64693 1.39094 1.20162 0.87542 0.78858 0.84355 1.90756 1.18976 1.49583 1.82037 1.20285 0.88714 0.79116 0.84313 1.90778 1.17820 1.48844 1.82608 1.45903 1.13487 1.65935 1.09045 1.21486 0.91338 1.01798 0.84864 1.21516 0.98695 1.01279 0.92721 1.19449 0.95576 0.96849 0.92904 1.21475 0.95206 1.45283 0.95097 0.94734 1.26022 1.04050 0.94280 0.95019 1.70071 1.38480 1.48871 1.01835 0.85661 0.79235 0.79909 0.77883 1.19199 1.21132 1.16763 0.88486 0.87339 0.86331 0.89906 0.85788 0.87273 0.89722 0.91355 0.86875 0.81296 0.81475 0.76044 0.74751 0.91102 0.91131 0.91931 0.91924 0.95723 0.95887 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 14.32 67.78 0.97 -1.29 16 2 C -0.19 -2.43 9.85 25.64 0.25 -2.18 16 3 C 0.14 1.73 5.79 85.63 0.50 2.23 16 4 N -0.57 -10.06 2.46 -827.75 -2.04 -12.10 16 5 C 0.12 1.86 4.94 86.38 0.43 2.28 16 6 C -0.05 -0.79 5.50 29.85 0.16 -0.62 16 7 C -0.02 -0.36 6.57 24.83 0.16 -0.19 16 8 C -0.21 -3.42 10.81 22.19 0.24 -3.18 16 9 C -0.22 -3.52 10.91 22.19 0.24 -3.27 16 10 C -0.06 -1.03 12.09 66.97 0.81 -0.22 16 11 O -0.20 -4.80 10.65 -2.63 -0.03 -4.83 16 12 C 0.51 12.34 7.70 87.27 0.67 13.01 16 13 O -0.54 -15.13 16.12 -3.25 -0.05 -15.18 16 14 C 0.49 13.41 7.65 87.27 0.67 14.08 16 15 O -0.52 -15.41 11.41 -3.25 -0.04 -15.44 16 16 N -0.69 -19.08 5.55 -464.39 -2.58 -21.66 16 17 C 0.13 3.94 5.67 86.38 0.49 4.43 16 18 C -0.10 -3.80 5.27 30.60 0.16 -3.64 16 19 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 20 C -0.53 -30.45 9.66 25.60 0.25 -30.20 16 21 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 22 C 0.00 0.17 5.47 84.65 0.46 0.64 16 23 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 24 Si 0.95 44.18 27.47 68.60 1.88 46.07 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 26 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 28 H 0.10 1.35 7.84 -2.91 -0.02 1.33 16 29 H 0.11 1.22 8.06 -2.91 -0.02 1.20 16 30 H 0.12 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.08 1.24 7.15 -2.39 -0.02 1.22 16 32 H 0.12 0.76 8.07 -2.39 -0.02 0.74 16 33 H 0.11 1.13 8.04 -2.39 -0.02 1.11 16 34 H 0.08 1.84 5.84 -2.39 -0.01 1.83 16 35 H 0.07 1.56 6.46 -2.39 -0.02 1.54 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.22 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.42 10.80 7.96 -92.71 -0.74 10.06 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 46 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 47 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 Total: -1.00 -73.55 398.05 4.21 -69.33 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.18 Total: 21.92 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 6.59 Total: -8.47 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -4.32 Total: -93.39 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.12 Total: -35.46 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.07 kcal Total: -73.55 4.21 -69.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286681967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.819 kcal (2) G-P(sol) polarization free energy of solvation -73.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds