Wall clock time and date at job start Tue Mar 31 2020 18:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 120.00142 * 2 1 4 4 N 1.46495 * 109.47290 * 125.00413 * 3 2 1 5 5 C 1.46499 * 120.00365 * 93.71572 * 4 3 2 6 6 C 1.50696 * 109.47217 * 95.15660 * 5 4 3 7 7 H 1.07993 * 120.00150 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99969 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99944 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99786 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47128 * 269.99909 * 10 8 6 12 12 H 1.48498 * 109.47089 * 29.99887 * 10 8 6 13 13 H 1.48499 * 109.47118 * 149.99995 * 10 8 6 14 14 C 1.34781 * 119.99719 * 273.71338 * 4 3 2 15 15 O 1.21276 * 120.00137 * 4.94239 * 14 4 3 16 16 C 1.50700 * 120.00021 * 184.93393 * 14 4 3 17 17 H 1.09005 * 109.50169 * 41.61409 * 16 14 4 18 18 C 1.53115 * 109.50752 * 281.53680 * 16 14 4 19 19 C 1.53121 * 109.16305 * 182.40404 * 18 16 14 20 20 C 1.53034 * 109.27554 * 57.65348 * 19 18 16 21 21 N 1.46850 * 109.52418 * 300.81903 * 20 19 18 22 22 C 1.46897 * 110.99972 * 185.84099 * 21 20 19 23 23 C 1.52999 * 109.47314 * 77.31499 * 22 21 20 24 24 F 1.39899 * 109.47229 * 54.67023 * 23 22 21 25 25 F 1.39897 * 109.47806 * 174.67460 * 23 22 21 26 26 F 1.39900 * 109.46979 * 294.67354 * 23 22 21 27 27 C 1.46847 * 111.19736 * 61.74793 * 21 20 19 28 28 H 1.07994 * 120.00015 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99533 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99533 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47662 * 4.99785 * 3 2 1 32 32 H 1.09002 * 109.47184 * 244.99936 * 3 2 1 33 33 H 1.09001 * 109.46908 * 335.15314 * 5 4 3 34 34 H 1.09003 * 109.47185 * 215.15945 * 5 4 3 35 35 H 0.96997 * 119.99835 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.52320 * 302.30819 * 18 16 14 37 37 H 1.09000 * 109.52132 * 62.49393 * 18 16 14 38 38 H 1.09000 * 109.50429 * 177.59133 * 19 18 16 39 39 H 1.09001 * 109.50312 * 297.71145 * 19 18 16 40 40 H 1.09002 * 109.46813 * 60.83983 * 20 19 18 41 41 H 1.09008 * 109.46495 * 180.80575 * 20 19 18 42 42 H 1.09002 * 109.47325 * 197.31312 * 22 21 20 43 43 H 1.08995 * 109.47435 * 317.31258 * 22 21 20 44 44 H 1.09000 * 109.46270 * 178.24266 * 27 21 20 45 45 H 1.09000 * 109.46550 * 58.26873 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1313 5 6 4.3823 0.9017 0.9484 6 6 5.2489 2.1040 0.6758 7 1 4.8094 3.0898 0.6417 8 6 6.6029 1.9452 0.4687 9 7 7.3591 2.9945 0.2303 10 14 7.3629 0.2398 0.5269 11 1 7.7917 -0.0639 1.9158 12 1 6.3607 -0.7640 0.0876 13 1 8.5406 0.1917 -0.3764 14 6 2.5724 1.7522 2.3405 15 8 1.4032 2.0230 2.5148 16 6 3.5540 1.8857 3.4761 17 1 4.4800 2.3267 3.1068 18 6 3.8458 0.5028 4.0650 19 6 4.7966 0.6538 5.2557 20 6 4.1648 1.5864 6.2916 21 7 3.9058 2.8960 5.6798 22 6 3.4277 3.8592 6.6805 23 6 4.6095 4.3563 7.5154 24 9 5.5972 4.8683 6.6671 25 9 4.1755 5.3617 8.3860 26 9 5.1366 3.2933 8.2566 27 6 2.9582 2.7826 4.5637 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9354 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3587 2.1316 0.0895 32 1 2.6214 1.4025 -0.9314 33 1 4.4412 0.2127 0.1058 34 1 4.7296 0.4008 1.8521 35 1 8.3116 2.8828 0.0851 36 1 2.9144 0.0449 4.3985 37 1 4.3102 -0.1260 3.3054 38 1 4.9743 -0.3229 5.7057 39 1 5.7422 1.0757 4.9150 40 1 3.2261 1.1572 6.6420 41 1 4.8455 1.7075 7.1343 42 1 2.9582 4.7040 6.1764 43 1 2.7004 3.3752 7.3323 44 1 2.7627 3.7724 4.1514 45 1 2.0252 2.3478 4.9221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292254176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:18 Heat of formation + Delta-G solvation = -181.244704 kcal Electronic energy + Delta-G solvation = -30697.944887 eV Core-core repulsion = 26107.200963 eV Total energy + Delta-G solvation = -4590.743924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.03558 -48.60256 -48.47456 -41.39438 -39.43647 -37.10241 -35.49624 -34.75552 -33.86484 -31.99747 -30.06613 -29.83926 -27.38282 -25.41630 -24.72759 -24.08860 -23.41630 -21.28603 -20.78300 -19.84280 -19.47836 -19.43911 -18.99936 -18.36571 -17.98493 -17.28054 -16.67743 -16.26943 -16.05204 -15.91720 -15.51174 -15.39878 -15.37131 -15.13843 -14.98592 -14.90592 -14.69468 -14.63252 -14.55645 -14.47157 -14.25167 -13.91843 -13.69646 -13.53827 -13.15537 -13.04375 -12.75155 -12.67751 -12.44758 -12.25988 -12.16525 -11.97850 -11.82990 -11.68096 -11.60344 -11.34732 -10.76744 -10.68584 -10.21581 -9.52914 -9.44017 -8.26469 -6.32907 1.29822 1.41543 1.42668 1.51454 1.68202 1.77761 2.31054 2.36581 2.63190 2.91454 3.07647 3.10487 3.46358 3.63344 3.76252 3.90210 4.01653 4.11007 4.12565 4.20555 4.25248 4.33116 4.39743 4.50627 4.55645 4.64452 4.68822 4.73871 4.76032 4.83548 4.91501 4.97543 5.06179 5.13719 5.25732 5.39143 5.48921 5.66360 5.69153 5.76846 5.86798 5.90679 6.21577 6.61244 6.73162 7.26044 7.36375 8.89749 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.004333 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.291047 B = 6460.519757 C = 8018.023602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.178 4.178 3 C 0.141 3.859 4 N -0.592 5.592 5 C 0.213 3.787 6 C -0.535 4.535 7 H 0.029 0.971 8 C 0.021 3.979 9 N -0.941 5.941 10 Si 0.934 3.066 11 H -0.259 1.259 12 H -0.237 1.237 13 H -0.288 1.288 14 C 0.524 3.476 15 O -0.586 6.586 16 C -0.104 4.104 17 H 0.093 0.907 18 C -0.107 4.107 19 C -0.112 4.112 20 C 0.040 3.960 21 N -0.551 5.551 22 C 0.014 3.986 23 C 0.458 3.542 24 F -0.188 7.188 25 F -0.185 7.185 26 F -0.185 7.185 27 C 0.096 3.904 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.267 0.733 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.110 0.890 44 H 0.068 0.932 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.831 -6.277 12.632 16.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.018 3.982 4 N -0.321 5.321 5 C 0.091 3.909 6 C -0.574 4.574 7 H 0.047 0.953 8 C -0.178 4.178 9 N -0.581 5.581 10 Si 0.756 3.244 11 H -0.184 1.184 12 H -0.160 1.160 13 H -0.214 1.214 14 C 0.313 3.687 15 O -0.468 6.468 16 C -0.126 4.126 17 H 0.112 0.888 18 C -0.145 4.145 19 C -0.149 4.149 20 C -0.087 4.087 21 N -0.275 5.275 22 C -0.116 4.116 23 C 0.403 3.597 24 F -0.170 7.170 25 F -0.166 7.166 26 F -0.167 7.167 27 C -0.032 4.032 28 H 0.137 0.863 29 H 0.111 0.889 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.145 0.855 43 H 0.128 0.872 44 H 0.086 0.914 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.774 -5.901 12.483 16.359 hybrid contribution 0.451 -0.062 -0.133 0.474 sum -8.324 -5.963 12.350 16.042 Atomic orbital electron populations 1.23949 0.95356 1.02518 0.98494 1.23234 0.96661 0.98101 1.01743 1.20524 0.92056 0.96169 0.89413 1.47951 1.11802 1.63436 1.08862 1.19823 0.77931 0.94759 0.98398 1.21458 0.92932 0.93594 1.49387 0.95270 1.25743 0.97433 1.00811 0.93771 1.70054 1.06352 1.32201 1.49473 0.85921 0.78909 0.80252 0.79298 1.18409 1.15998 1.21432 1.20700 0.88379 0.75378 0.84260 1.90562 1.19363 1.52981 1.83848 1.21264 0.98972 0.99077 0.93243 0.88840 1.21608 1.00483 0.93930 0.98453 1.21566 0.98310 1.00199 0.94844 1.22574 1.01148 0.87421 0.97567 1.61507 1.46455 1.10442 1.09120 1.23235 0.92371 1.00208 0.95792 1.20729 0.85241 0.75125 0.78560 1.93203 1.65299 1.87532 1.70949 1.93174 1.89534 1.62387 1.71534 1.93087 1.88518 1.56385 1.78682 1.21624 0.92422 0.99423 0.89710 0.86344 0.88894 0.86705 0.91584 0.89755 0.93725 0.92979 0.92427 0.90919 0.91038 0.88313 0.92426 0.92485 0.88600 0.85461 0.87173 0.91359 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 14.32 67.78 0.97 -3.20 16 2 C -0.18 -5.17 9.82 25.64 0.25 -4.92 16 3 C 0.14 4.93 5.75 85.63 0.49 5.42 16 4 N -0.59 -23.28 2.46 -830.53 -2.04 -25.32 16 5 C 0.21 8.88 3.90 85.63 0.33 9.21 16 6 C -0.54 -28.02 8.75 25.60 0.22 -27.80 16 7 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 8 C 0.02 1.15 5.47 84.66 0.46 1.61 16 9 N -0.94 -55.88 13.96 21.45 0.30 -55.58 16 10 Si 0.93 39.36 27.47 68.60 1.88 41.24 16 11 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 12 H -0.24 -8.86 6.54 99.48 0.65 -8.21 16 13 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 14 C 0.52 20.48 6.79 87.66 0.60 21.08 16 15 O -0.59 -24.34 15.70 -3.02 -0.05 -24.39 16 16 C -0.10 -3.63 1.88 -11.49 -0.02 -3.65 16 17 H 0.09 3.98 6.59 -2.38 -0.02 3.97 16 18 C -0.11 -3.05 5.05 30.67 0.15 -2.89 16 19 C -0.11 -2.75 6.09 30.65 0.19 -2.56 16 20 C 0.04 0.89 5.23 86.32 0.45 1.34 16 21 N -0.55 -14.44 4.41 -896.35 -3.95 -18.39 16 22 C 0.01 0.27 5.12 86.30 0.44 0.72 16 23 C 0.46 10.52 3.28 71.98 0.24 10.76 16 24 F -0.19 -5.56 17.14 44.97 0.77 -4.79 16 25 F -0.18 -4.04 17.32 44.97 0.78 -3.26 16 26 F -0.19 -4.24 14.67 44.97 0.66 -3.58 16 27 C 0.10 2.87 4.17 86.33 0.36 3.23 16 28 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.09 2.40 7.84 -2.91 -0.02 2.37 16 30 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 31 H 0.07 2.40 7.26 -2.39 -0.02 2.38 16 32 H 0.08 2.93 8.04 -2.39 -0.02 2.92 16 33 H 0.04 1.79 7.09 -2.39 -0.02 1.77 16 34 H 0.05 2.05 4.08 -2.39 -0.01 2.04 16 35 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.07 2.12 5.65 -2.39 -0.01 2.10 16 38 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.10 2.04 5.48 -2.38 -0.01 2.03 16 42 H 0.13 2.34 7.77 -2.39 -0.02 2.32 16 43 H 0.11 1.61 7.98 -2.39 -0.02 1.59 16 44 H 0.07 2.18 7.92 -2.39 -0.02 2.16 16 45 H 0.05 1.55 7.88 -2.39 -0.02 1.53 16 Total: -1.00 -64.82 368.12 4.43 -60.39 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.94 Total: 25.33 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 5.14 Total: 8.35 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -5.70 Total: -99.30 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.39 kcal Atomic # 9 Polarization: -13.83 SS G_CDS: 2.21 Total: -11.62 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.88 Total: 41.24 kcal Total: -64.82 4.43 -60.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292254176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.853 kcal (2) G-P(sol) polarization free energy of solvation -64.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds