Wall clock time and date at job start Tue Mar 31 2020 18:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00239 * 2 1 4 4 N 1.46494 * 109.47518 * 126.49535 * 3 2 1 5 5 C 1.46496 * 120.00169 * 265.20011 * 4 3 2 6 6 C 1.50705 * 109.46809 * 273.99256 * 5 4 3 7 7 H 1.08000 * 120.00066 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00055 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00401 * 179.97438 * 8 6 5 10 10 Si 1.86809 * 120.00005 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47162 * 89.99930 * 10 8 6 12 12 H 1.48500 * 109.47089 * 210.00053 * 10 8 6 13 13 H 1.48501 * 109.46830 * 329.99936 * 10 8 6 14 14 C 1.34787 * 119.99933 * 85.19328 * 4 3 2 15 15 O 1.21283 * 119.99609 * 5.15625 * 14 4 3 16 16 C 1.50700 * 119.99881 * 185.15372 * 14 4 3 17 17 C 1.53117 * 109.51764 * 159.26518 * 16 14 4 18 18 C 1.53040 * 109.27633 * 177.55677 * 17 16 14 19 19 N 1.46849 * 109.52557 * 300.82311 * 18 17 16 20 20 C 1.46894 * 110.99876 * 185.83723 * 19 18 17 21 21 C 1.52999 * 109.47277 * 75.24415 * 20 19 18 22 22 F 1.39903 * 109.46788 * 54.80097 * 21 20 19 23 23 F 1.39903 * 109.47131 * 174.79895 * 21 20 19 24 24 F 1.39897 * 109.47301 * 294.79787 * 21 20 19 25 25 C 1.46847 * 111.19707 * 61.73996 * 19 18 17 26 26 C 1.53043 * 109.52223 * 298.25912 * 25 19 18 27 27 H 1.08005 * 119.99823 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00558 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.99823 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46999 * 6.49422 * 3 2 1 31 31 H 1.09008 * 109.46803 * 246.49880 * 3 2 1 32 32 H 1.08995 * 109.47329 * 33.98933 * 5 4 3 33 33 H 1.09002 * 109.47257 * 153.99463 * 5 4 3 34 34 H 0.96997 * 120.00586 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.52224 * 39.13931 * 16 14 4 36 36 H 1.09000 * 109.50764 * 57.62161 * 17 16 14 37 37 H 1.09003 * 109.54004 * 297.51585 * 17 16 14 38 38 H 1.08995 * 109.46451 * 180.79929 * 18 17 16 39 39 H 1.09012 * 109.45194 * 60.83312 * 18 17 16 40 40 H 1.09007 * 109.47132 * 195.24462 * 20 19 18 41 41 H 1.09000 * 109.47417 * 315.24313 * 20 19 18 42 42 H 1.09001 * 109.46325 * 58.27397 * 25 19 18 43 43 H 1.08996 * 109.45808 * 178.24544 * 25 19 18 44 44 H 1.08998 * 109.50000 * 299.23877 * 26 25 19 45 45 H 1.09005 * 109.50167 * 179.12288 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0191 1.3173 1.1103 5 6 2.6486 1.9288 2.3889 6 6 2.9385 3.4069 2.3415 7 1 3.3573 3.8467 1.4484 8 6 2.6702 4.1976 3.4386 9 7 2.9236 5.4874 3.3975 10 14 1.9465 3.4369 4.9837 11 1 3.0455 2.9972 5.8804 12 1 1.1080 4.4424 5.6845 13 1 1.1107 2.2663 4.6143 14 6 4.2392 0.7658 0.9555 15 8 4.5805 0.3434 -0.1290 16 6 5.1791 0.6740 2.1298 17 6 6.2307 -0.4058 1.8603 18 6 7.2180 -0.4524 3.0287 19 7 7.8634 0.8581 3.1784 20 6 8.9173 0.8122 4.2007 21 6 10.1441 0.0929 3.6365 22 9 10.5422 0.7130 2.4473 23 9 11.1882 0.1527 4.5658 24 9 9.8238 -1.2446 3.3805 25 6 6.8783 1.9032 3.4847 26 6 5.8809 2.0201 2.3299 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5401 -0.9352 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3609 2.1303 0.1162 31 1 2.6001 1.4148 -0.9425 32 1 1.5855 1.7728 2.5718 33 1 3.2265 1.4708 3.1917 34 1 2.7351 6.0437 4.1694 35 1 4.6164 0.4185 3.0277 36 1 6.7663 -0.1708 0.9405 37 1 5.7410 -1.3744 1.7589 38 1 7.9763 -1.2106 2.8334 39 1 6.6837 -0.7011 3.9458 40 1 9.1910 1.8279 4.4863 41 1 8.5515 0.2748 5.0757 42 1 6.3458 1.6435 4.3996 43 1 7.3900 2.8560 3.6205 44 1 6.4110 2.2934 1.4175 45 1 5.1407 2.7851 2.5644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292502885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:00 Heat of formation + Delta-G solvation = -182.302896 kcal Electronic energy + Delta-G solvation = -30487.930259 eV Core-core repulsion = 25897.140448 eV Total energy + Delta-G solvation = -4590.789810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.02357 -48.59696 -48.45645 -41.36299 -39.46363 -37.17301 -35.46864 -34.65576 -33.86933 -31.82194 -30.20509 -29.93209 -27.48030 -25.37531 -24.45976 -24.01631 -23.42339 -21.52312 -20.70410 -19.79567 -19.45652 -19.40210 -18.93426 -18.30941 -17.97108 -17.43612 -16.68971 -16.37056 -16.02805 -15.92946 -15.57598 -15.45736 -15.25550 -15.20167 -14.91023 -14.89267 -14.68194 -14.61438 -14.54014 -14.38357 -14.07598 -13.83650 -13.54550 -13.31354 -13.18641 -13.07313 -12.79186 -12.62927 -12.50422 -12.29470 -12.23562 -12.07832 -11.93337 -11.69080 -11.55568 -11.30044 -10.72708 -10.66054 -10.25789 -9.51153 -9.44867 -8.25024 -6.30629 1.27077 1.40946 1.45681 1.53226 1.72774 1.78431 2.37151 2.41632 2.52505 2.93585 3.08113 3.13072 3.49814 3.57276 3.82008 3.90540 4.01970 4.12826 4.16141 4.21827 4.26820 4.33734 4.44438 4.47317 4.53755 4.61764 4.76055 4.78179 4.82305 4.89232 4.92992 4.95515 5.04068 5.10830 5.34198 5.43516 5.49791 5.60033 5.66600 5.82043 5.89513 5.92747 6.22314 6.63982 6.74077 7.26203 7.37477 8.90527 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.003835 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.502479 B = 7300.225914 C = 8858.937879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.141 3.859 4 N -0.593 5.593 5 C 0.217 3.783 6 C -0.529 4.529 7 H 0.031 0.969 8 C 0.029 3.971 9 N -0.938 5.938 10 Si 0.930 3.070 11 H -0.255 1.255 12 H -0.290 1.290 13 H -0.244 1.244 14 C 0.516 3.484 15 O -0.593 6.593 16 C -0.097 4.097 17 C -0.089 4.089 18 C 0.043 3.957 19 N -0.549 5.549 20 C 0.011 3.989 21 C 0.457 3.543 22 F -0.187 7.187 23 F -0.185 7.185 24 F -0.187 7.187 25 C 0.074 3.926 26 C -0.112 4.112 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.135 0.865 41 H 0.107 0.893 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.716 -12.642 5.820 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.018 3.982 4 N -0.322 5.322 5 C 0.095 3.905 6 C -0.568 4.568 7 H 0.050 0.950 8 C -0.171 4.171 9 N -0.577 5.577 10 Si 0.753 3.247 11 H -0.179 1.179 12 H -0.216 1.216 13 H -0.167 1.167 14 C 0.306 3.694 15 O -0.475 6.475 16 C -0.118 4.118 17 C -0.127 4.127 18 C -0.084 4.084 19 N -0.275 5.275 20 C -0.118 4.118 21 C 0.403 3.597 22 F -0.168 7.168 23 F -0.167 7.167 24 F -0.169 7.169 25 C -0.053 4.053 26 C -0.150 4.150 27 H 0.122 0.878 28 H 0.138 0.862 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.153 0.847 41 H 0.125 0.875 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.098 -12.573 4.902 15.248 hybrid contribution -0.481 0.199 0.799 0.954 sum 6.617 -12.373 5.702 15.146 Atomic orbital electron populations 1.24040 0.94874 1.03165 0.98208 1.23154 0.96716 0.97743 1.02089 1.20455 0.91497 0.96252 0.89950 1.48007 1.13617 1.55785 1.14768 1.19700 0.96880 0.92001 0.81891 1.21343 1.42743 0.92374 1.00324 0.95022 1.25632 0.95045 0.94726 1.01689 1.70040 1.49160 1.06464 1.32011 0.85980 0.79865 0.79231 0.79651 1.17910 1.21614 1.16715 1.21015 0.82018 0.76202 0.90190 1.90576 1.76342 1.51601 1.28945 1.21330 0.95651 0.98331 0.96508 1.21346 0.95165 0.97472 0.98743 1.22529 0.97449 0.90376 0.98001 1.61668 1.13710 1.06850 1.45224 1.23288 0.89208 1.04646 0.94667 1.20773 0.85793 0.77249 0.75929 1.93186 1.92002 1.82492 1.49149 1.93179 1.61353 1.96252 1.65901 1.93078 1.92163 1.37292 1.94365 1.22003 0.92045 0.94677 0.96573 1.21651 0.98325 0.96225 0.98812 0.87796 0.86163 0.88115 0.89991 0.91721 0.94340 0.93119 0.92314 0.88106 0.92442 0.90576 0.88342 0.92332 0.84696 0.87522 0.92653 0.89250 0.93517 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 14.32 67.78 0.97 -3.07 16 2 C -0.18 -5.39 9.81 25.65 0.25 -5.14 16 3 C 0.14 5.16 5.86 85.63 0.50 5.66 16 4 N -0.59 -23.58 2.45 -830.49 -2.04 -25.62 16 5 C 0.22 8.85 3.80 85.64 0.33 9.18 16 6 C -0.53 -26.36 7.65 25.60 0.20 -26.17 16 7 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 8 C 0.03 1.45 5.47 84.65 0.46 1.91 16 9 N -0.94 -52.61 13.96 21.45 0.30 -52.31 16 10 Si 0.93 37.15 27.47 68.60 1.88 39.03 16 11 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 12 H -0.29 -11.92 7.11 99.48 0.71 -11.22 16 13 H -0.24 -8.90 6.54 99.48 0.65 -8.25 16 14 C 0.52 20.58 6.79 87.66 0.60 21.18 16 15 O -0.59 -26.56 15.63 -3.04 -0.05 -26.61 16 16 C -0.10 -3.20 1.76 -11.46 -0.02 -3.22 16 17 C -0.09 -2.56 4.90 30.65 0.15 -2.41 16 18 C 0.04 0.99 5.22 86.33 0.45 1.44 16 19 N -0.55 -12.93 4.42 -896.34 -3.97 -16.90 16 20 C 0.01 0.20 5.11 86.30 0.44 0.64 16 21 C 0.46 9.21 3.27 71.98 0.24 9.44 16 22 F -0.19 -4.70 17.15 44.97 0.77 -3.93 16 23 F -0.19 -3.59 17.32 44.97 0.78 -2.81 16 24 F -0.19 -3.98 14.54 44.97 0.65 -3.33 16 25 C 0.07 1.93 5.43 86.33 0.47 2.39 16 26 C -0.11 -3.87 5.26 30.65 0.16 -3.71 16 27 H 0.10 2.43 7.85 -2.91 -0.02 2.41 16 28 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.10 3.12 8.06 -2.91 -0.02 3.09 16 30 H 0.08 2.99 7.69 -2.39 -0.02 2.97 16 31 H 0.06 2.53 7.50 -2.38 -0.02 2.51 16 32 H 0.04 1.54 7.16 -2.39 -0.02 1.52 16 33 H 0.05 1.90 5.18 -2.39 -0.01 1.89 16 34 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.10 3.02 6.44 -2.39 -0.02 3.00 16 36 H 0.06 1.95 7.81 -2.39 -0.02 1.93 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.10 2.12 5.35 -2.39 -0.01 2.11 16 39 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.14 1.89 7.80 -2.38 -0.02 1.87 16 41 H 0.11 1.34 8.01 -2.39 -0.02 1.32 16 42 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.09 2.21 7.93 -2.39 -0.02 2.19 16 44 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.09 3.74 5.19 -2.38 -0.01 3.72 16 Total: -1.00 -62.80 367.32 4.47 -58.33 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.94 Total: 26.01 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.19 Total: 8.12 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -5.70 Total: -94.82 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 9 Polarization: -12.27 SS G_CDS: 2.20 Total: -10.07 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 1.88 Total: 39.03 kcal Total: -62.80 4.47 -58.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292502885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.975 kcal (2) G-P(sol) polarization free energy of solvation -62.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds