Wall clock time and date at job start Tue Mar 31 2020 18:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50698 * 119.99968 * 2 1 4 4 N 1.46500 * 109.47334 * 125.00207 * 3 2 1 5 5 C 1.46508 * 119.99814 * 269.99804 * 4 3 2 6 6 C 1.50701 * 109.47171 * 270.00017 * 5 4 3 7 7 H 1.08003 * 119.99891 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99933 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00155 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 119.99814 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46952 * 90.00001 * 10 8 6 12 12 H 1.48492 * 109.46878 * 209.99819 * 10 8 6 13 13 H 1.48495 * 109.47108 * 330.00060 * 10 8 6 14 14 C 1.34776 * 120.00092 * 89.99774 * 4 3 2 15 15 O 1.21285 * 119.99953 * 179.97438 * 14 4 3 16 16 C 1.50694 * 120.00171 * 0.02562 * 14 4 3 17 17 N 1.46495 * 109.47276 * 179.97438 * 16 14 4 18 18 C 1.34339 * 122.84876 * 269.95680 * 17 16 14 19 19 O 1.21233 * 125.94223 * 357.13998 * 18 17 16 20 20 C 1.50656 * 108.10859 * 177.09966 * 18 17 16 21 21 H 1.08999 * 105.60755 * 256.00128 * 20 18 17 22 22 C 1.49434 * 113.96629 * 139.71634 * 20 18 17 23 23 C 1.50274 * 114.36930 * 266.06220 * 22 20 18 24 24 C 1.53451 * 107.63325 * 305.73406 * 23 22 20 25 25 C 1.52225 * 108.02620 * 68.14337 * 24 23 22 26 26 C 1.51124 * 105.12268 * 7.51560 * 20 18 17 27 27 H 1.09005 * 109.91776 * 234.45450 * 26 20 18 28 28 C 1.34045 * 122.84353 * 90.00388 * 17 16 14 29 29 O 1.21233 * 125.58883 * 356.72222 * 28 17 16 30 30 H 1.07997 * 120.00373 * 359.97438 * 1 2 3 31 31 H 1.08006 * 119.99927 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00001 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.47398 * 4.99850 * 3 2 1 34 34 H 1.08999 * 109.47293 * 245.00327 * 3 2 1 35 35 H 1.08998 * 109.46934 * 30.00599 * 5 4 3 36 36 H 1.08997 * 109.46488 * 150.00012 * 5 4 3 37 37 H 0.97000 * 120.00188 * 179.97438 * 9 8 6 38 38 H 1.09010 * 109.47180 * 59.99850 * 16 14 4 39 39 H 1.09000 * 109.47170 * 300.00321 * 16 14 4 40 40 H 1.08999 * 108.71780 * 27.33757 * 22 20 18 41 41 H 1.09006 * 108.71562 * 145.36425 * 22 20 18 42 42 H 1.08996 * 110.14332 * 186.00973 * 23 22 20 43 43 H 1.08997 * 109.53831 * 65.10866 * 23 22 20 44 44 H 1.09003 * 109.75250 * 308.50825 * 24 23 22 45 45 H 1.09006 * 109.75064 * 187.77718 * 24 23 22 46 46 H 1.09000 * 108.80146 * 180.53539 * 25 24 23 47 47 H 1.09001 * 108.71326 * 62.22502 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8650 2.4249 6 6 2.8442 3.3437 2.4804 7 1 3.3040 3.8370 1.6367 8 6 2.5193 4.0667 3.6085 9 7 2.7688 5.3569 3.6572 10 14 1.7247 3.2133 5.0680 11 1 2.7808 2.7221 5.9893 12 1 0.8489 4.1735 5.7861 13 1 0.9131 2.0658 4.5887 14 6 4.2497 0.8662 0.9823 15 8 5.0200 0.8888 1.9189 16 6 4.6972 0.3184 -0.3483 17 7 6.0918 -0.1198 -0.2519 18 6 7.1302 0.6915 -0.5127 19 8 7.0576 1.8389 -0.8975 20 6 8.4005 -0.0722 -0.2428 21 1 8.7738 0.3065 0.7087 22 6 9.4813 0.1741 -1.2449 23 6 9.5224 -0.8214 -2.3698 24 6 9.6072 -2.2219 -1.7484 25 6 8.2859 -2.5075 -1.0485 26 6 7.9574 -1.4916 0.0271 27 1 8.3489 -1.8266 0.9876 28 6 6.4398 -1.3647 0.1031 29 8 5.6739 -2.2438 0.4353 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8499 -0.9353 0.0004 33 1 1.3585 2.1317 0.0895 34 1 2.6212 1.4026 -0.9314 35 1 1.4888 1.6966 2.5460 36 1 3.0990 1.3604 3.2259 37 1 2.5399 5.8656 4.4508 38 1 4.6125 1.0953 -1.1082 39 1 4.0680 -0.5283 -0.6228 40 1 9.3440 1.1682 -1.6703 41 1 10.4443 0.1445 -0.7350 42 1 10.3949 -0.6421 -2.9981 43 1 8.6138 -0.7358 -2.9658 44 1 10.4220 -2.2552 -1.0250 45 1 9.7775 -2.9622 -2.5302 46 1 8.3359 -3.4968 -0.5938 47 1 7.4884 -2.5028 -1.7915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293679654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:29 Heat of formation + Delta-G solvation = -75.916038 kcal Electronic energy + Delta-G solvation = -30013.709075 eV Core-core repulsion = 25969.389285 eV Total energy + Delta-G solvation = -4044.319790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.42002 -39.30129 -38.63548 -37.78878 -35.96110 -35.51162 -33.25753 -32.42904 -32.10633 -31.70949 -29.23096 -27.34632 -25.57788 -25.30807 -23.53997 -22.64851 -22.31390 -20.41146 -19.99345 -19.31859 -18.61300 -17.55807 -16.97535 -16.91150 -16.51260 -16.34722 -15.81235 -15.12052 -15.01692 -14.84319 -14.80080 -14.48682 -14.42363 -13.92432 -13.62929 -13.36231 -13.28750 -13.13746 -13.01381 -12.78078 -12.40594 -12.31528 -12.10226 -11.82136 -11.72940 -11.64858 -11.18064 -11.13245 -10.97802 -10.85102 -10.63653 -10.55440 -10.32874 -10.23174 -10.16086 -9.89375 -9.57280 -9.31776 -9.02118 -8.59784 -7.85023 -6.09251 -4.08517 1.52084 2.26102 2.39511 2.67812 3.13662 3.28672 3.34696 3.36858 3.75571 3.80789 3.97116 4.12244 4.32048 4.38860 4.61033 4.68026 4.80571 4.84629 4.95412 5.02906 5.09626 5.11410 5.15244 5.19788 5.23579 5.31861 5.35030 5.41377 5.51493 5.53743 5.61418 5.64928 5.72364 5.84565 5.90853 5.93007 5.99363 6.07745 6.63616 6.68565 6.76247 6.80330 6.90198 7.25009 7.28892 7.58584 7.73988 8.09380 8.44171 8.77718 8.94660 9.50295 11.03991 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.003498 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.016108 B = 8002.548110 C = 8844.586541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.174 4.174 3 C 0.133 3.867 4 N -0.583 5.583 5 C 0.219 3.781 6 C -0.530 4.530 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.499 3.501 15 O -0.531 6.531 16 C 0.077 3.923 17 N -0.557 5.557 18 C 0.539 3.461 19 O -0.468 6.468 20 C -0.117 4.117 21 H 0.114 0.886 22 C -0.100 4.100 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.103 4.103 26 C -0.103 4.103 27 H 0.122 0.878 28 C 0.533 3.467 29 O -0.478 6.478 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.906 -16.605 -14.276 24.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.193 4.193 3 C 0.009 3.991 4 N -0.314 5.314 5 C 0.098 3.902 6 C -0.569 4.569 7 H 0.094 0.906 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.284 3.716 15 O -0.407 6.407 16 C -0.047 4.047 17 N -0.300 5.300 18 C 0.327 3.673 19 O -0.338 6.338 20 C -0.139 4.139 21 H 0.132 0.868 22 C -0.138 4.138 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.141 4.141 26 C -0.124 4.124 27 H 0.140 0.860 28 C 0.322 3.678 29 O -0.349 6.349 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.802 -16.228 -13.643 23.357 hybrid contribution -0.757 -0.135 1.061 1.310 sum 9.046 -16.363 -12.582 22.536 Atomic orbital electron populations 1.23855 0.95782 1.01936 1.00021 1.23442 0.96548 0.98931 1.00379 1.20683 0.93288 0.95766 0.89356 1.47855 1.10272 1.59937 1.13330 1.19687 0.94999 0.95210 0.80262 1.21315 1.41313 0.91010 1.03238 0.90648 1.24837 0.95247 0.94719 0.98073 1.69894 1.47633 1.06594 1.29263 0.86874 0.79904 0.79706 0.83384 1.19926 1.20974 1.19005 1.20357 0.82772 0.78959 0.89515 1.90681 1.52458 1.56111 1.41497 1.21733 0.81559 1.02764 0.98694 1.46453 1.08252 1.13700 1.61559 1.20638 0.86153 0.85824 0.74650 1.90788 1.86153 1.15164 1.41726 1.20477 0.94939 0.94437 1.04022 0.86765 1.20103 0.96878 1.01164 0.95644 1.21207 1.02591 0.94745 0.97457 1.21500 0.96869 0.97218 0.99868 1.20936 0.98663 0.97800 0.96674 1.21320 0.91891 0.95698 1.03521 0.86016 1.21141 0.91840 0.80876 0.73979 1.90751 1.58484 1.42726 1.42951 0.88115 0.88608 0.87569 0.88724 0.90494 0.94948 0.94618 0.92528 0.86241 0.86566 0.90002 0.90480 0.90776 0.91789 0.91093 0.91075 0.90293 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 14.32 29.02 0.42 -1.76 16 2 C -0.17 -2.36 9.74 -36.03 -0.35 -2.72 16 3 C 0.13 2.10 5.65 -5.19 -0.03 2.07 16 4 N -0.58 -12.26 2.44 -176.43 -0.43 -12.69 16 5 C 0.22 5.48 4.23 -5.19 -0.02 5.46 16 6 C -0.53 -15.51 9.94 -34.44 -0.34 -15.85 16 7 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 8 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 9 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 10 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 11 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.29 6.54 56.52 0.37 -5.93 16 14 C 0.50 10.59 7.74 -10.99 -0.09 10.50 16 15 O -0.53 -13.50 16.01 5.55 0.09 -13.42 16 16 C 0.08 1.22 4.61 -5.20 -0.02 1.20 16 17 N -0.56 -8.50 2.06 -116.24 -0.24 -8.74 16 18 C 0.54 8.03 7.62 -11.20 -0.09 7.94 16 19 O -0.47 -8.47 17.02 5.60 0.10 -8.37 16 20 C -0.12 -1.21 2.62 -94.50 -0.25 -1.46 16 21 H 0.11 1.14 8.05 -51.93 -0.42 0.72 16 22 C -0.10 -0.79 5.22 -29.85 -0.16 -0.94 16 23 C -0.12 -0.78 5.99 -27.86 -0.17 -0.95 16 24 C -0.12 -0.65 5.97 -26.89 -0.16 -0.81 16 25 C -0.10 -0.76 5.28 -27.86 -0.15 -0.90 16 26 C -0.10 -1.00 3.29 -92.56 -0.30 -1.30 16 27 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 28 C 0.53 7.52 7.02 -10.43 -0.07 7.45 16 29 O -0.48 -7.97 17.53 5.60 0.10 -7.88 16 30 H 0.10 1.20 7.84 -52.49 -0.41 0.78 16 31 H 0.10 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.11 1.39 7.83 -52.49 -0.41 0.98 16 33 H 0.09 1.55 7.72 -51.93 -0.40 1.15 16 34 H 0.08 1.01 6.44 -51.93 -0.33 0.67 16 35 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 36 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 37 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.12 1.70 7.10 -51.92 -0.37 1.33 16 39 H 0.12 1.54 7.51 -51.93 -0.39 1.15 16 40 H 0.08 0.75 7.50 -51.93 -0.39 0.36 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 44 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.52 7.68 -51.93 -0.40 0.12 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -37.83 384.96 -7.58 -45.40 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.22 Total: -0.19 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -1.88 Total: 10.02 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.10 Total: -48.65 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: 0.28 Total: -29.66 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.83 -7.58 -45.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293679654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.513 kcal (2) G-P(sol) polarization free energy of solvation -37.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds