Wall clock time and date at job start Tue Mar 31 2020 18:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50698 * 119.99968 * 2 1 4 4 N 1.46500 * 109.47334 * 125.00207 * 3 2 1 5 5 C 1.46508 * 119.99814 * 269.99804 * 4 3 2 6 6 C 1.50701 * 109.47171 * 270.00017 * 5 4 3 7 7 H 1.08003 * 119.99891 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99933 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00155 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 119.99814 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46952 * 90.00001 * 10 8 6 12 12 H 1.48492 * 109.46878 * 209.99819 * 10 8 6 13 13 H 1.48495 * 109.47108 * 330.00060 * 10 8 6 14 14 C 1.34776 * 120.00092 * 89.99774 * 4 3 2 15 15 O 1.21285 * 119.99953 * 179.97438 * 14 4 3 16 16 C 1.50694 * 120.00171 * 0.02562 * 14 4 3 17 17 N 1.46495 * 109.47276 * 179.97438 * 16 14 4 18 18 C 1.34339 * 122.84876 * 269.95680 * 17 16 14 19 19 O 1.21233 * 125.94223 * 357.13998 * 18 17 16 20 20 C 1.50656 * 108.10859 * 177.09966 * 18 17 16 21 21 H 1.08999 * 105.60755 * 256.00128 * 20 18 17 22 22 C 1.49434 * 113.96629 * 139.71634 * 20 18 17 23 23 C 1.50274 * 114.36930 * 266.06220 * 22 20 18 24 24 C 1.53451 * 107.63325 * 305.73406 * 23 22 20 25 25 C 1.52225 * 108.02620 * 68.14337 * 24 23 22 26 26 C 1.51124 * 105.12268 * 7.51560 * 20 18 17 27 27 H 1.09005 * 109.91776 * 234.45450 * 26 20 18 28 28 C 1.34045 * 122.84353 * 90.00388 * 17 16 14 29 29 O 1.21233 * 125.58883 * 356.72222 * 28 17 16 30 30 H 1.07997 * 120.00373 * 359.97438 * 1 2 3 31 31 H 1.08006 * 119.99927 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00001 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.47398 * 4.99850 * 3 2 1 34 34 H 1.08999 * 109.47293 * 245.00327 * 3 2 1 35 35 H 1.08998 * 109.46934 * 30.00599 * 5 4 3 36 36 H 1.08997 * 109.46488 * 150.00012 * 5 4 3 37 37 H 0.97000 * 120.00188 * 179.97438 * 9 8 6 38 38 H 1.09010 * 109.47180 * 59.99850 * 16 14 4 39 39 H 1.09000 * 109.47170 * 300.00321 * 16 14 4 40 40 H 1.08999 * 108.71780 * 27.33757 * 22 20 18 41 41 H 1.09006 * 108.71562 * 145.36425 * 22 20 18 42 42 H 1.08996 * 110.14332 * 186.00973 * 23 22 20 43 43 H 1.08997 * 109.53831 * 65.10866 * 23 22 20 44 44 H 1.09003 * 109.75250 * 308.50825 * 24 23 22 45 45 H 1.09006 * 109.75064 * 187.77718 * 24 23 22 46 46 H 1.09000 * 108.80146 * 180.53539 * 25 24 23 47 47 H 1.09001 * 108.71326 * 62.22502 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8650 2.4249 6 6 2.8442 3.3437 2.4804 7 1 3.3040 3.8370 1.6367 8 6 2.5193 4.0667 3.6085 9 7 2.7688 5.3569 3.6572 10 14 1.7247 3.2133 5.0680 11 1 2.7808 2.7221 5.9893 12 1 0.8489 4.1735 5.7861 13 1 0.9131 2.0658 4.5887 14 6 4.2497 0.8662 0.9823 15 8 5.0200 0.8888 1.9189 16 6 4.6972 0.3184 -0.3483 17 7 6.0918 -0.1198 -0.2519 18 6 7.1302 0.6915 -0.5127 19 8 7.0576 1.8389 -0.8975 20 6 8.4005 -0.0722 -0.2428 21 1 8.7738 0.3065 0.7087 22 6 9.4813 0.1741 -1.2449 23 6 9.5224 -0.8214 -2.3698 24 6 9.6072 -2.2219 -1.7484 25 6 8.2859 -2.5075 -1.0485 26 6 7.9574 -1.4916 0.0271 27 1 8.3489 -1.8266 0.9876 28 6 6.4398 -1.3647 0.1031 29 8 5.6739 -2.2438 0.4353 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8499 -0.9353 0.0004 33 1 1.3585 2.1317 0.0895 34 1 2.6212 1.4026 -0.9314 35 1 1.4888 1.6966 2.5460 36 1 3.0990 1.3604 3.2259 37 1 2.5399 5.8656 4.4508 38 1 4.6125 1.0953 -1.1082 39 1 4.0680 -0.5283 -0.6228 40 1 9.3440 1.1682 -1.6703 41 1 10.4443 0.1445 -0.7350 42 1 10.3949 -0.6421 -2.9981 43 1 8.6138 -0.7358 -2.9658 44 1 10.4220 -2.2552 -1.0250 45 1 9.7775 -2.9622 -2.5302 46 1 8.3359 -3.4968 -0.5938 47 1 7.4884 -2.5028 -1.7915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293679654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:29 Heat of formation + Delta-G solvation = -101.245168 kcal Electronic energy + Delta-G solvation = -30014.807428 eV Core-core repulsion = 25969.389285 eV Total energy + Delta-G solvation = -4045.418143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.49628 -40.87683 -39.84816 -38.65171 -37.46824 -36.79255 -35.14781 -33.85943 -33.29913 -32.37031 -30.89900 -28.83105 -27.00995 -26.25568 -24.80519 -23.74358 -23.50225 -21.60347 -21.04738 -20.33645 -19.92224 -19.17141 -18.77753 -18.31388 -17.60499 -17.54918 -17.11503 -16.53257 -16.32601 -15.95933 -15.91045 -15.76290 -15.55725 -15.41949 -14.81717 -14.57833 -14.54874 -14.26355 -14.11992 -13.86076 -13.69763 -13.59069 -13.50548 -13.16388 -12.96748 -12.94222 -12.57474 -12.39731 -12.32419 -12.01149 -11.81103 -11.72947 -11.71594 -11.60363 -11.22753 -11.06895 -10.95421 -10.89296 -10.63602 -10.39489 -9.61861 -8.39601 -6.45734 0.38004 1.10476 1.27679 1.31029 1.32061 1.40393 1.49478 1.56835 2.25259 2.29366 2.87589 2.93993 2.97882 3.31237 3.39685 3.63851 3.80749 3.88942 4.02074 4.03474 4.08582 4.13236 4.18387 4.26254 4.32485 4.35674 4.47344 4.55090 4.67084 4.77028 4.81024 4.81710 4.97617 5.01533 5.02670 5.13592 5.23523 5.34086 5.36233 5.39491 5.39733 5.53422 5.62836 5.67065 5.84137 6.14998 6.16423 6.41577 6.55568 6.60169 7.06233 7.21035 8.77451 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.003498 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.016108 B = 8002.548110 C = 8844.586541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.189 4.189 3 C 0.127 3.873 4 N -0.589 5.589 5 C 0.230 3.770 6 C -0.539 4.539 7 H 0.027 0.973 8 C 0.014 3.986 9 N -0.942 5.942 10 Si 0.947 3.053 11 H -0.277 1.277 12 H -0.270 1.270 13 H -0.239 1.239 14 C 0.488 3.512 15 O -0.585 6.585 16 C 0.084 3.916 17 N -0.566 5.566 18 C 0.529 3.471 19 O -0.511 6.511 20 C -0.107 4.107 21 H 0.119 0.881 22 C -0.098 4.098 23 C -0.122 4.122 24 C -0.110 4.110 25 C -0.101 4.101 26 C -0.089 4.089 27 H 0.142 0.858 28 C 0.526 3.474 29 O -0.507 6.507 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.015 0.985 37 H 0.270 0.730 38 H 0.133 0.867 39 H 0.145 0.855 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.099 -19.574 -14.799 26.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.208 4.208 3 C 0.006 3.994 4 N -0.319 5.319 5 C 0.108 3.892 6 C -0.578 4.578 7 H 0.045 0.955 8 C -0.184 4.184 9 N -0.582 5.582 10 Si 0.769 3.231 11 H -0.202 1.202 12 H -0.195 1.195 13 H -0.162 1.162 14 C 0.275 3.725 15 O -0.465 6.465 16 C -0.041 4.041 17 N -0.308 5.308 18 C 0.320 3.680 19 O -0.384 6.384 20 C -0.128 4.128 21 H 0.137 0.863 22 C -0.136 4.136 23 C -0.159 4.159 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.110 4.110 27 H 0.160 0.840 28 C 0.317 3.683 29 O -0.380 6.380 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.079 0.921 38 H 0.150 0.850 39 H 0.162 0.838 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.110 0.890 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.977 -19.227 -14.226 25.915 hybrid contribution -0.846 0.877 1.153 1.678 sum 9.132 -18.350 -13.073 24.311 Atomic orbital electron populations 1.24103 0.95272 1.03212 0.97150 1.23246 0.96949 0.97687 1.02906 1.20955 0.92839 0.97131 0.88525 1.47953 1.11376 1.59211 1.13382 1.19309 0.95563 0.92184 0.82151 1.21503 1.40957 0.93305 1.02009 0.95452 1.25831 0.95816 0.95364 1.01438 1.70043 1.49092 1.08477 1.30582 0.85732 0.79112 0.79429 0.78805 1.20244 1.19508 1.16239 1.21297 0.82191 0.78139 0.90885 1.90632 1.53828 1.58364 1.43685 1.21714 0.82900 1.03995 0.95464 1.46746 1.08027 1.14479 1.61557 1.21531 0.87650 0.85502 0.73311 1.90755 1.86918 1.17009 1.43727 1.20603 0.93122 0.94050 1.04990 0.86289 1.20157 0.96862 1.00750 0.95816 1.21229 1.02830 0.94931 0.96919 1.21498 0.96004 0.96777 1.00398 1.20996 0.99587 0.97443 0.95830 1.21454 0.88096 0.95875 1.05569 0.84006 1.21979 0.93758 0.79890 0.72680 1.90725 1.59748 1.43341 1.44172 0.87904 0.86220 0.86810 0.89657 0.88003 0.93053 0.96643 0.92107 0.84953 0.83770 0.91741 0.87845 0.88972 0.93091 0.89501 0.89455 0.89004 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 14.32 67.79 0.97 -2.49 16 2 C -0.19 -4.80 9.74 25.65 0.25 -4.55 16 3 C 0.13 3.99 5.65 85.63 0.48 4.48 16 4 N -0.59 -25.30 2.44 -830.50 -2.03 -27.32 16 5 C 0.23 11.72 4.23 85.63 0.36 12.08 16 6 C -0.54 -32.86 9.94 25.60 0.25 -32.60 16 7 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 8 C 0.01 0.85 5.47 84.66 0.46 1.31 16 9 N -0.94 -60.84 13.96 21.45 0.30 -60.54 16 10 Si 0.95 45.61 27.47 68.60 1.88 47.50 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 14 C 0.49 21.33 7.74 87.66 0.68 22.01 16 15 O -0.58 -31.07 16.01 -3.04 -0.05 -31.12 16 16 C 0.08 2.69 4.61 85.63 0.39 3.09 16 17 N -0.57 -17.49 2.06 -759.16 -1.56 -19.05 16 18 C 0.53 16.15 7.62 87.71 0.67 16.82 16 19 O -0.51 -19.40 17.02 -2.88 -0.05 -19.45 16 20 C -0.11 -2.10 2.62 -13.30 -0.03 -2.14 16 21 H 0.12 2.27 8.05 -2.39 -0.02 2.25 16 22 C -0.10 -1.37 5.22 28.57 0.15 -1.22 16 23 C -0.12 -1.24 5.99 29.87 0.18 -1.07 16 24 C -0.11 -0.82 5.97 30.49 0.18 -0.64 16 25 C -0.10 -1.22 5.28 29.86 0.16 -1.06 16 26 C -0.09 -1.57 3.29 -12.05 -0.04 -1.61 16 27 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16 28 C 0.53 14.60 7.02 88.35 0.62 15.22 16 29 O -0.51 -16.68 17.53 -2.88 -0.05 -16.73 16 30 H 0.10 2.20 7.84 -2.91 -0.02 2.17 16 31 H 0.12 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.11 2.74 7.83 -2.91 -0.02 2.72 16 33 H 0.09 2.81 7.72 -2.39 -0.02 2.79 16 34 H 0.10 2.61 6.44 -2.39 -0.02 2.60 16 35 H 0.05 2.41 7.13 -2.39 -0.02 2.39 16 36 H 0.02 0.85 6.85 -2.39 -0.02 0.84 16 37 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 38 H 0.13 3.83 7.10 -2.38 -0.02 3.81 16 39 H 0.14 3.72 7.51 -2.39 -0.02 3.71 16 40 H 0.06 1.16 7.50 -2.39 -0.02 1.14 16 41 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.05 0.66 8.11 -2.39 -0.02 0.64 16 44 H 0.09 0.44 8.10 -2.39 -0.02 0.42 16 45 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 46 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.06 0.80 7.68 -2.39 -0.02 0.78 16 Total: -1.00 -87.93 384.96 5.09 -82.84 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.91 Total: 16.25 kcal Atomic # 6 Polarization: 21.88 SS G_CDS: 5.74 Total: 27.62 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -3.29 Total: -106.91 kcal Atomic # 8 Polarization: -67.14 SS G_CDS: -0.15 Total: -67.29 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.50 kcal Total: -87.93 5.09 -82.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293679654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.410 kcal (2) G-P(sol) polarization free energy of solvation -87.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds