Wall clock time and date at job start Tue Mar 31 2020 18:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46938 * 2 1 4 4 H 1.09003 * 109.47593 * 305.00078 * 3 2 1 5 5 C 1.50702 * 109.46962 * 184.99802 * 3 2 1 6 6 H 1.08000 * 119.99988 * 240.00145 * 5 3 2 7 7 C 1.37876 * 120.00031 * 60.00488 * 5 3 2 8 8 N 1.31524 * 119.99741 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00315 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46985 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47154 * 119.99714 * 9 7 5 12 12 H 1.48496 * 109.47046 * 239.99926 * 9 7 5 13 13 N 1.46497 * 109.47285 * 65.00149 * 3 2 1 14 14 C 1.34779 * 119.99983 * 275.00023 * 13 3 2 15 15 O 1.21353 * 119.99913 * 359.97438 * 14 13 3 16 16 C 1.49349 * 119.99944 * 179.97438 * 14 13 3 17 17 O 1.21375 * 120.00230 * 359.97438 * 16 14 13 18 18 N 1.34781 * 119.99899 * 179.97438 * 16 14 13 19 19 C 1.39720 * 120.00052 * 175.19306 * 18 16 14 20 20 C 1.38992 * 120.04923 * 215.73687 * 19 18 16 21 21 C 1.38107 * 120.03145 * 179.71882 * 20 19 18 22 22 C 1.38222 * 120.13168 * 0.55449 * 21 20 19 23 23 C 1.38768 * 120.09678 * 359.71729 * 22 21 20 24 24 O 1.35900 * 120.01703 * 179.97438 * 23 22 21 25 25 C 1.42894 * 117.00070 * 5.31574 * 24 23 22 26 26 C 1.53006 * 109.47334 * 154.85800 * 25 24 23 27 27 C 1.53005 * 109.47391 * 274.85821 * 25 24 23 28 28 C 1.38608 * 119.96548 * 0.02562 * 23 22 21 29 29 H 1.08991 * 109.47024 * 300.00083 * 1 2 3 30 30 H 1.08999 * 109.47109 * 59.99947 * 1 2 3 31 31 H 1.09000 * 109.47061 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46741 * 239.99988 * 2 1 3 33 33 H 1.08999 * 109.47109 * 120.00053 * 2 1 3 34 34 H 0.96998 * 119.99732 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00106 * 95.26908 * 13 3 2 36 36 H 0.97001 * 119.99891 * 355.19545 * 18 16 14 37 37 H 1.08001 * 119.97798 * 359.97389 * 20 19 18 38 38 H 1.08001 * 119.92985 * 180.25105 * 21 20 19 39 39 H 1.08000 * 119.94945 * 179.74438 * 22 21 20 40 40 H 1.08999 * 109.47396 * 34.85792 * 25 24 23 41 41 H 1.08999 * 109.46886 * 59.99679 * 26 25 24 42 42 H 1.09000 * 109.47212 * 180.02562 * 26 25 24 43 43 H 1.08998 * 109.46939 * 300.00318 * 26 25 24 44 44 H 1.09000 * 109.47328 * 179.97438 * 27 25 24 45 45 H 1.08999 * 109.46826 * 300.00319 * 27 25 24 46 46 H 1.09001 * 109.47023 * 59.99876 * 27 25 24 47 47 H 1.08004 * 120.06595 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8800 -1.3811 10 1 6.5988 1.5451 -0.1936 11 1 6.4962 -0.5191 -1.4627 12 1 6.4000 1.6157 -2.6090 13 7 1.6525 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6326 0.4336 16 6 0.0398 3.3316 2.6433 17 8 0.8147 3.3629 3.5771 18 7 -1.1773 3.8989 2.7583 19 6 -1.5857 4.4343 3.9826 20 6 -2.9155 4.3377 4.3755 21 6 -3.3176 4.8619 5.5883 22 6 -2.4021 5.4935 6.4090 23 6 -1.0743 5.5979 6.0195 24 8 -0.1757 6.2197 6.8275 25 6 -0.6398 6.6387 8.1124 26 6 0.5428 6.7219 9.0796 27 6 -1.2988 8.0144 7.9930 28 6 -0.6653 5.0686 4.8056 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0617 -2.9495 35 1 2.2734 2.1266 1.9964 36 1 -1.7698 3.9355 1.9911 37 1 -3.6337 3.8490 3.7338 38 1 -4.3504 4.7824 5.8938 39 1 -2.7207 5.9060 7.3549 40 1 -1.3669 5.9190 8.4886 41 1 1.2699 7.4416 8.7034 42 1 0.1887 7.0411 10.0598 43 1 1.0123 5.7419 9.1647 44 1 -1.6532 8.3338 8.9730 45 1 -0.5717 8.7341 7.6168 46 1 -2.1413 7.9551 7.3039 47 1 0.3679 5.1485 4.5010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297017239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:46 Heat of formation + Delta-G solvation = -86.016037 kcal Electronic energy + Delta-G solvation = -28426.217064 eV Core-core repulsion = 24381.459306 eV Total energy + Delta-G solvation = -4044.757758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96373 -40.09448 -38.64196 -37.49797 -35.46394 -34.57657 -33.48389 -32.41946 -31.01090 -30.26346 -29.58031 -27.62434 -27.27647 -24.98131 -23.32775 -23.02990 -22.58204 -20.97590 -20.16174 -19.49756 -18.95740 -18.16712 -16.71703 -16.44989 -16.28863 -15.92839 -15.74355 -15.58476 -15.23643 -15.09997 -14.33960 -14.28948 -13.92756 -13.73592 -13.64465 -13.32326 -13.06560 -12.79184 -12.75543 -12.58774 -12.27124 -12.09769 -11.91542 -11.82624 -11.61252 -11.35975 -11.27508 -11.08089 -11.00627 -10.90993 -10.80684 -10.36137 -10.30754 -10.27133 -9.70927 -9.14068 -9.07069 -8.57899 -8.55667 -8.20165 -8.04670 -6.18332 -4.27854 1.01324 1.30431 1.88559 2.59022 3.02430 3.22576 3.30870 3.34777 3.54434 3.75943 4.09717 4.33403 4.40545 4.53407 4.66909 4.71389 4.88674 5.00607 5.07707 5.11681 5.14271 5.16706 5.32220 5.35655 5.40548 5.42034 5.72018 5.74391 5.79756 6.07216 6.11844 6.23372 6.29512 6.30526 6.35601 6.54261 6.67725 6.93694 6.99853 7.12541 7.17893 7.26290 7.30498 7.48687 7.62801 7.76874 7.89991 8.07187 8.42713 8.60879 8.85022 9.39034 10.87111 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.002418 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.026427 B =11577.442590 C =12899.090853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.667 5.667 14 C 0.495 3.505 15 O -0.529 6.529 16 C 0.506 3.494 17 O -0.501 6.501 18 N -0.652 5.652 19 C 0.187 3.813 20 C -0.180 4.180 21 C -0.062 4.062 22 C -0.228 4.228 23 C 0.149 3.851 24 O -0.307 6.307 25 C 0.076 3.924 26 C -0.150 4.150 27 C -0.180 4.180 28 C -0.156 4.156 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.425 0.575 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.666 11.146 18.682 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.166 3.834 4 H 0.073 0.927 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.315 5.315 14 C 0.274 3.726 15 O -0.408 6.408 16 C 0.289 3.711 17 O -0.374 6.374 18 N -0.299 5.299 19 C 0.092 3.908 20 C -0.200 4.200 21 C -0.081 4.081 22 C -0.248 4.248 23 C 0.103 3.897 24 O -0.221 6.221 25 C 0.020 3.980 26 C -0.207 4.207 27 C -0.238 4.238 28 C -0.177 4.177 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.122 0.878 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.236 0.764 36 H 0.263 0.737 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.348 11.020 18.389 24.740 hybrid contribution 0.705 -0.029 -0.004 0.706 sum -11.643 10.991 18.385 24.380 Atomic orbital electron populations 1.21856 0.98303 0.98437 1.01029 1.21965 0.92658 0.99375 1.02797 1.19033 0.94835 0.89412 0.80074 0.92706 1.21245 0.90294 1.39329 1.06551 0.91696 1.24877 0.98855 0.94605 0.95244 1.69896 1.35179 1.37480 1.09361 0.86353 0.84519 0.77837 0.78207 1.19605 1.20802 1.20833 1.46472 1.13302 1.52451 1.19325 1.19556 0.84564 0.81549 0.86954 1.90742 1.51171 1.59488 1.39355 1.21068 0.81647 0.78673 0.89697 1.90748 1.50085 1.56471 1.40072 1.43229 1.18132 1.56631 1.11900 1.17412 0.92912 0.93996 0.86472 1.20862 0.94702 1.05923 0.98553 1.20671 0.99101 0.95473 0.92871 1.21241 0.92800 1.08207 1.02525 1.18712 0.88126 0.92153 0.90668 1.86155 1.37498 1.71671 1.26769 1.22447 0.97415 0.95966 0.82162 1.21862 0.97653 1.03533 0.97642 1.22394 1.01604 0.96997 1.02784 1.20474 1.01822 1.01405 0.93962 0.94622 0.92928 0.95461 0.87815 0.94644 0.92497 0.76351 0.73680 0.85273 0.85380 0.85357 0.90830 0.91364 0.90575 0.91485 0.91072 0.91352 0.91731 0.83464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.52 37.16 0.32 -2.65 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.56 2.24 -69.09 -0.15 6.41 16 4 H 0.06 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.65 7.73 -52.49 -0.41 1.25 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.08 11.29 55.43 0.63 -23.45 16 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.67 -14.08 5.02 -55.40 -0.28 -14.36 16 14 C 0.50 9.71 6.45 -11.63 -0.08 9.64 16 15 O -0.53 -11.13 13.62 5.49 0.07 -11.05 16 16 C 0.51 8.69 7.73 -11.63 -0.09 8.60 16 17 O -0.50 -9.35 13.96 5.47 0.08 -9.27 16 18 N -0.65 -9.17 5.32 -10.31 -0.05 -9.23 16 19 C 0.19 2.50 6.28 -83.77 -0.53 1.98 16 20 C -0.18 -1.93 9.97 -39.35 -0.39 -2.32 16 21 C -0.06 -0.58 10.03 -39.64 -0.40 -0.98 16 22 C -0.23 -2.29 8.25 -39.39 -0.33 -2.62 16 23 C 0.15 1.88 6.60 -39.25 -0.26 1.62 16 24 O -0.31 -3.74 9.80 -19.43 -0.19 -3.93 16 25 C 0.08 0.63 2.84 -26.73 -0.08 0.55 16 26 C -0.15 -1.03 9.56 37.16 0.36 -0.67 16 27 C -0.18 -1.21 9.18 37.16 0.34 -0.87 16 28 C -0.16 -2.26 8.63 -39.23 -0.34 -2.60 16 29 H 0.03 0.73 5.64 -51.93 -0.29 0.44 16 30 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 35 H 0.40 8.03 8.00 -40.82 -0.33 7.70 16 36 H 0.42 5.21 8.30 -40.82 -0.34 4.88 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.13 0.99 5.43 -52.49 -0.29 0.70 16 40 H 0.07 0.54 6.29 -51.93 -0.33 0.21 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.45 6.94 -51.93 -0.36 0.09 16 47 H 0.15 2.42 6.29 -52.48 -0.33 2.09 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -29.72 383.03 -7.87 -37.59 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -6.72 Total: 12.18 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.16 Total: 0.31 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.29 Total: -47.04 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.04 Total: -24.25 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.72 -7.87 -37.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297017239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.423 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds