Wall clock time and date at job start Tue Mar 31 2020 18:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46938 * 2 1 4 4 H 1.09003 * 109.47593 * 305.00078 * 3 2 1 5 5 C 1.50702 * 109.46962 * 184.99802 * 3 2 1 6 6 H 1.08000 * 119.99988 * 240.00145 * 5 3 2 7 7 C 1.37876 * 120.00031 * 60.00488 * 5 3 2 8 8 N 1.31524 * 119.99741 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00315 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46985 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47154 * 119.99714 * 9 7 5 12 12 H 1.48496 * 109.47046 * 239.99926 * 9 7 5 13 13 N 1.46497 * 109.47285 * 65.00149 * 3 2 1 14 14 C 1.34779 * 119.99983 * 275.00023 * 13 3 2 15 15 O 1.21353 * 119.99913 * 359.97438 * 14 13 3 16 16 C 1.49349 * 119.99944 * 179.97438 * 14 13 3 17 17 O 1.21375 * 120.00230 * 359.97438 * 16 14 13 18 18 N 1.34781 * 119.99899 * 179.97438 * 16 14 13 19 19 C 1.39720 * 120.00052 * 175.19306 * 18 16 14 20 20 C 1.38992 * 120.04923 * 215.73687 * 19 18 16 21 21 C 1.38107 * 120.03145 * 179.71882 * 20 19 18 22 22 C 1.38222 * 120.13168 * 0.55449 * 21 20 19 23 23 C 1.38768 * 120.09678 * 359.71729 * 22 21 20 24 24 O 1.35900 * 120.01703 * 179.97438 * 23 22 21 25 25 C 1.42894 * 117.00070 * 5.31574 * 24 23 22 26 26 C 1.53006 * 109.47334 * 154.85800 * 25 24 23 27 27 C 1.53005 * 109.47391 * 274.85821 * 25 24 23 28 28 C 1.38608 * 119.96548 * 0.02562 * 23 22 21 29 29 H 1.08991 * 109.47024 * 300.00083 * 1 2 3 30 30 H 1.08999 * 109.47109 * 59.99947 * 1 2 3 31 31 H 1.09000 * 109.47061 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46741 * 239.99988 * 2 1 3 33 33 H 1.08999 * 109.47109 * 120.00053 * 2 1 3 34 34 H 0.96998 * 119.99732 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00106 * 95.26908 * 13 3 2 36 36 H 0.97001 * 119.99891 * 355.19545 * 18 16 14 37 37 H 1.08001 * 119.97798 * 359.97389 * 20 19 18 38 38 H 1.08001 * 119.92985 * 180.25105 * 21 20 19 39 39 H 1.08000 * 119.94945 * 179.74438 * 22 21 20 40 40 H 1.08999 * 109.47396 * 34.85792 * 25 24 23 41 41 H 1.08999 * 109.46886 * 59.99679 * 26 25 24 42 42 H 1.09000 * 109.47212 * 180.02562 * 26 25 24 43 43 H 1.08998 * 109.46939 * 300.00318 * 26 25 24 44 44 H 1.09000 * 109.47328 * 179.97438 * 27 25 24 45 45 H 1.08999 * 109.46826 * 300.00319 * 27 25 24 46 46 H 1.09001 * 109.47023 * 59.99876 * 27 25 24 47 47 H 1.08004 * 120.06595 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8800 -1.3811 10 1 6.5988 1.5451 -0.1936 11 1 6.4962 -0.5191 -1.4627 12 1 6.4000 1.6157 -2.6090 13 7 1.6525 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6326 0.4336 16 6 0.0398 3.3316 2.6433 17 8 0.8147 3.3629 3.5771 18 7 -1.1773 3.8989 2.7583 19 6 -1.5857 4.4343 3.9826 20 6 -2.9155 4.3377 4.3755 21 6 -3.3176 4.8619 5.5883 22 6 -2.4021 5.4935 6.4090 23 6 -1.0743 5.5979 6.0195 24 8 -0.1757 6.2197 6.8275 25 6 -0.6398 6.6387 8.1124 26 6 0.5428 6.7219 9.0796 27 6 -1.2988 8.0144 7.9930 28 6 -0.6653 5.0686 4.8056 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0617 -2.9495 35 1 2.2734 2.1266 1.9964 36 1 -1.7698 3.9355 1.9911 37 1 -3.6337 3.8490 3.7338 38 1 -4.3504 4.7824 5.8938 39 1 -2.7207 5.9060 7.3549 40 1 -1.3669 5.9190 8.4886 41 1 1.2699 7.4416 8.7034 42 1 0.1887 7.0411 10.0598 43 1 1.0123 5.7419 9.1647 44 1 -1.6532 8.3338 8.9730 45 1 -0.5717 8.7341 7.6168 46 1 -2.1413 7.9551 7.3039 47 1 0.3679 5.1485 4.5010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297017239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:45 Heat of formation + Delta-G solvation = -105.112763 kcal Electronic energy + Delta-G solvation = -28427.045160 eV Core-core repulsion = 24381.459306 eV Total energy + Delta-G solvation = -4045.585855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.18582 -41.15640 -40.03741 -38.57780 -37.20805 -35.80021 -34.33293 -34.13798 -32.83610 -31.19955 -30.50690 -29.18130 -28.15281 -26.43282 -24.93089 -23.90217 -23.78398 -22.13949 -21.46137 -21.17336 -20.20970 -19.34772 -18.19757 -17.90480 -17.40847 -17.04311 -16.98146 -16.93624 -16.48311 -16.29745 -16.03531 -15.48417 -15.10204 -14.73741 -14.63698 -14.63138 -14.51216 -13.93911 -13.74064 -13.50607 -13.43204 -13.22201 -13.17140 -13.02627 -12.94093 -12.78340 -12.70919 -12.68159 -12.33034 -12.15020 -12.11907 -11.82616 -11.64308 -11.60025 -11.27670 -11.10845 -10.64798 -10.54574 -9.86527 -9.54094 -9.09440 -8.20015 -6.36804 -0.06983 0.43271 0.58072 1.29055 1.43048 1.45638 1.57000 2.11541 2.21442 2.39361 2.74759 2.79207 3.09856 3.48511 3.80362 3.90923 4.01007 4.03408 4.20120 4.20993 4.29934 4.47892 4.49841 4.54409 4.56766 4.70234 4.70479 4.83011 4.85721 4.92876 5.00882 5.16383 5.17738 5.20970 5.23686 5.27803 5.33612 5.34927 5.38114 5.44648 5.55156 5.66056 5.76143 5.79599 5.99520 6.10177 6.50213 6.53564 6.65399 6.77162 7.07550 7.34941 8.85401 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.002418 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.026427 B =11577.442590 C =12899.090853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.553 4.553 6 H 0.066 0.934 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.281 1.281 13 N -0.671 5.671 14 C 0.497 3.503 15 O -0.543 6.543 16 C 0.514 3.486 17 O -0.520 6.520 18 N -0.634 5.634 19 C 0.163 3.837 20 C -0.174 4.174 21 C -0.053 4.053 22 C -0.218 4.218 23 C 0.137 3.863 24 O -0.333 6.333 25 C 0.066 3.934 26 C -0.149 4.149 27 C -0.176 4.176 28 C -0.185 4.185 29 H 0.039 0.961 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.267 0.733 35 H 0.407 0.593 36 H 0.433 0.567 37 H 0.153 0.847 38 H 0.169 0.831 39 H 0.157 0.843 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.055 0.945 44 H 0.096 0.904 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.557 11.667 20.974 28.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.173 3.827 4 H 0.034 0.966 5 C -0.591 4.591 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.207 1.207 13 N -0.320 5.320 14 C 0.277 3.723 15 O -0.422 6.422 16 C 0.296 3.704 17 O -0.395 6.395 18 N -0.282 5.282 19 C 0.069 3.931 20 C -0.195 4.195 21 C -0.071 4.071 22 C -0.237 4.237 23 C 0.091 3.909 24 O -0.248 6.248 25 C 0.011 3.989 26 C -0.206 4.206 27 C -0.233 4.233 28 C -0.206 4.206 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.243 0.757 36 H 0.273 0.727 37 H 0.171 0.829 38 H 0.187 0.813 39 H 0.174 0.826 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.074 0.926 44 H 0.115 0.885 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.280 11.568 20.708 27.687 hybrid contribution 1.196 -0.099 -0.629 1.355 sum -13.084 11.469 20.078 26.568 Atomic orbital electron populations 1.21708 0.96470 0.99746 1.00438 1.21820 0.94246 0.98467 1.01700 1.18665 0.94118 0.89646 0.80232 0.96588 1.21538 0.91222 1.39488 1.06873 0.91542 1.25677 1.03181 0.94173 0.94881 1.70016 1.36911 1.37964 1.09790 0.85346 0.79232 0.77945 0.78128 1.19061 1.20204 1.20675 1.46259 1.14246 1.53063 1.18472 1.19924 0.83743 0.80853 0.87756 1.90726 1.51449 1.59813 1.40259 1.20428 0.82683 0.79087 0.88219 1.90754 1.50918 1.57570 1.40236 1.43048 1.16876 1.55385 1.12879 1.17617 0.94121 0.95279 0.86050 1.21181 0.93534 1.05331 0.99413 1.21169 1.00794 0.93491 0.91670 1.21592 0.91512 1.07053 1.03513 1.18837 0.89389 0.92384 0.90277 1.86137 1.38591 1.71758 1.28309 1.22796 0.98332 0.97063 0.80757 1.21911 0.97220 1.02803 0.98698 1.22373 1.01048 0.95727 1.04168 1.20391 1.00775 1.03697 0.95720 0.94158 0.94442 0.93149 0.90201 0.94242 0.92336 0.75723 0.72699 0.82913 0.81337 0.82558 0.89492 0.92163 0.87776 0.92552 0.88483 0.92396 0.91926 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.52 71.98 0.61 -4.78 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.79 16 3 C 0.28 13.99 2.24 44.24 0.10 14.09 16 4 H 0.02 0.94 7.58 -2.39 -0.02 0.92 16 5 C -0.55 -29.49 8.73 25.60 0.22 -29.26 16 6 H 0.07 3.44 7.73 -2.91 -0.02 3.41 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -50.70 11.29 21.45 0.24 -50.46 16 9 Si 0.97 42.28 29.54 68.60 2.03 44.30 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 13 N -0.67 -29.22 5.02 -447.54 -2.24 -31.47 16 14 C 0.50 19.99 6.45 87.24 0.56 20.56 16 15 O -0.54 -23.33 13.62 -3.26 -0.04 -23.37 16 16 C 0.51 18.04 7.73 87.24 0.67 18.71 16 17 O -0.52 -20.13 13.96 -3.33 -0.05 -20.18 16 18 N -0.63 -17.84 5.32 -304.88 -1.62 -19.46 16 19 C 0.16 4.28 6.28 38.20 0.24 4.52 16 20 C -0.17 -3.27 9.97 22.42 0.22 -3.05 16 21 C -0.05 -0.78 10.03 22.23 0.22 -0.56 16 22 C -0.22 -3.74 8.25 22.39 0.18 -3.55 16 23 C 0.14 3.38 6.60 22.48 0.15 3.53 16 24 O -0.33 -8.13 9.80 -92.43 -0.91 -9.03 16 25 C 0.07 0.98 2.84 30.60 0.09 1.07 16 26 C -0.15 -1.87 9.56 71.98 0.69 -1.18 16 27 C -0.18 -1.97 9.18 71.98 0.66 -1.31 16 28 C -0.18 -5.50 8.63 22.50 0.19 -5.30 16 29 H 0.04 1.65 5.64 -2.39 -0.01 1.64 16 30 H 0.04 1.68 7.85 -2.39 -0.02 1.66 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 4.27 5.95 -2.39 -0.01 4.25 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.41 16.80 8.00 -92.71 -0.74 16.06 16 36 H 0.43 10.42 8.30 -92.71 -0.77 9.65 16 37 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.16 1.75 5.43 -2.91 -0.02 1.74 16 40 H 0.09 1.03 6.29 -2.39 -0.02 1.02 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 0.73 6.94 -2.39 -0.02 0.71 16 47 H 0.12 4.10 6.29 -2.91 -0.02 4.09 16 Total: -1.00 -66.82 383.03 2.35 -64.48 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -0.50 Total: 35.90 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.44 Total: 9.29 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -3.62 Total: -101.38 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -1.00 Total: -52.58 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -66.82 2.35 -64.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297017239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.635 kcal (2) G-P(sol) polarization free energy of solvation -66.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds